Wall clock time and date at job start Tue Mar 31 2020 20:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 110.32929 * 2 1 4 4 C 1.54918 * 110.36468 * 122.23108 * 2 1 3 5 5 C 1.55159 * 101.58227 * 155.95814 * 4 2 1 6 6 H 1.09000 * 110.71966 * 83.03761 * 5 4 2 7 7 N 1.46893 * 110.72172 * 206.13810 * 5 4 2 8 8 C 1.46903 * 111.00304 * 202.55957 * 7 5 4 9 9 C 1.50696 * 109.47177 * 179.97438 * 8 7 5 10 10 O 1.21292 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99627 * 179.97438 * 9 8 7 12 12 C 1.37090 * 119.99714 * 180.02562 * 11 9 8 13 13 H 1.07999 * 120.00232 * 0.02562 * 12 11 9 14 14 C 1.38955 * 119.99992 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00236 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00316 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00267 * 16 14 12 19 19 H 1.48504 * 109.46913 * 150.00066 * 16 14 12 20 20 C 1.54330 * 103.10026 * 324.59002 * 5 4 2 21 21 N 1.47314 * 107.12258 * 21.97474 * 20 5 4 22 22 C 1.34777 * 125.61843 * 181.11179 * 21 20 5 23 23 O 1.21694 * 120.00023 * 180.22716 * 22 21 20 24 24 C 1.46585 * 119.99754 * 0.21897 * 22 21 20 25 25 C 1.36638 * 125.45921 * 179.72145 * 24 22 21 26 26 C 1.37474 * 113.30135 * 179.83875 * 25 24 22 27 27 C 1.33814 * 115.09598 * 0.45797 * 26 25 24 28 28 S 1.70620 * 110.95792 * 359.74286 * 27 26 25 29 29 H 1.09000 * 109.47692 * 297.76495 * 1 2 3 30 30 H 1.09003 * 109.47324 * 57.77103 * 1 2 3 31 31 H 1.09004 * 109.47594 * 177.76192 * 1 2 3 32 32 H 1.09004 * 111.00081 * 37.88541 * 4 2 1 33 33 H 1.09000 * 111.03998 * 274.05128 * 4 2 1 34 34 H 1.00902 * 110.99797 * 326.51157 * 7 5 4 35 35 H 1.09005 * 109.46883 * 59.99694 * 8 7 5 36 36 H 1.09002 * 109.46817 * 300.00144 * 8 7 5 37 37 H 0.96999 * 120.00048 * 0.02562 * 11 9 8 38 38 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.87716 * 141.52123 * 20 5 4 40 40 H 1.09001 * 109.87631 * 262.68308 * 20 5 4 41 41 H 1.08002 * 123.35195 * 0.02771 * 25 24 22 42 42 H 1.07998 * 122.45366 * 180.22523 * 26 25 24 43 43 H 1.08005 * 124.52687 * 179.76868 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0690 -0.7746 1.2286 5 6 3.4788 -1.1965 0.7367 6 1 4.1948 -0.3869 0.8779 7 7 3.9283 -2.4120 1.4283 8 6 5.3928 -2.5243 1.3975 9 6 5.8155 -3.7799 2.1155 10 8 4.9792 -4.5098 2.6044 11 7 7.1230 -4.0924 2.2135 12 6 7.5076 -5.2349 2.8662 13 1 6.7629 -5.8848 3.3015 14 6 8.8555 -5.5568 2.9677 15 7 9.2243 -6.6518 3.5939 16 14 10.1434 -4.4330 2.2142 17 1 10.4047 -4.8492 0.8129 18 1 9.6493 -3.0328 2.2307 19 1 11.4003 -4.5237 3.0000 20 6 3.2569 -1.4734 -0.7653 21 7 2.0454 -0.7382 -1.1674 22 6 1.5007 -0.7374 -2.4002 23 8 0.4960 -0.0872 -2.6211 24 6 2.1186 -1.5196 -3.4750 25 6 1.6595 -1.6033 -4.7592 26 6 2.4343 -2.4059 -5.5625 27 6 3.4863 -2.9689 -4.9566 28 16 3.5650 -2.5067 -3.3161 29 1 -0.3634 0.4787 0.9093 30 1 -0.3634 0.5481 -0.8693 31 1 -0.3634 -1.0269 -0.0401 32 1 1.4520 -1.6476 1.4415 33 1 2.1378 -0.1252 2.1013 34 1 3.5837 -2.4370 2.3763 35 1 5.8340 -1.6580 1.8906 36 1 5.7323 -2.5652 0.3625 37 1 7.7917 -3.5088 1.8222 38 1 10.1652 -6.8766 3.6644 39 1 4.1152 -1.1215 -1.3377 40 1 3.1129 -2.5415 -0.9279 41 1 0.7774 -1.0876 -5.1092 42 1 2.2083 -2.5730 -6.6053 43 1 4.1917 -3.6276 -5.4414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507301093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:59 Heat of formation + Delta-G solvation = -44.144180 kcal Electronic energy + Delta-G solvation = -26439.415445 eV Core-core repulsion = 22610.655773 eV Total energy + Delta-G solvation = -3828.759671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41802 -40.26379 -39.21266 -38.10951 -36.24183 -35.60724 -33.71235 -33.35019 -31.23819 -30.41984 -28.09511 -27.02769 -26.04503 -25.44894 -23.44305 -21.98200 -21.32920 -21.04007 -20.20732 -19.97716 -18.78627 -17.96602 -17.75500 -16.98492 -16.74091 -16.70843 -16.34002 -15.99826 -15.73670 -15.47721 -15.02464 -14.78469 -14.70812 -14.32533 -14.30158 -13.87115 -13.81925 -13.76003 -13.61118 -13.44420 -13.17826 -13.08482 -12.94590 -12.80608 -12.40353 -12.37165 -12.11044 -11.95152 -11.81424 -11.55671 -11.47384 -10.88773 -10.39601 -10.21262 -10.04551 -9.68950 -9.46292 -9.39376 -8.38132 -5.98910 -0.47583 0.53049 1.00112 1.32897 1.38888 1.40260 1.47536 1.78841 2.00602 2.13837 2.26194 2.72207 3.18615 3.21466 3.44016 3.49670 3.78781 4.06761 4.12928 4.15275 4.18409 4.30800 4.36409 4.39315 4.49886 4.53423 4.57189 4.61999 4.63962 4.73851 4.86877 4.95781 5.00425 5.18548 5.18662 5.25319 5.38293 5.47589 5.56009 5.92874 6.05376 6.31928 6.37299 6.63107 6.92264 6.98774 7.44137 8.01182 8.79593 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002921 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.400161 B = 9582.857985 C =11160.319911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 H 0.094 0.906 4 C -0.124 4.124 5 C 0.086 3.914 6 H 0.094 0.906 7 N -0.675 5.675 8 C 0.059 3.941 9 C 0.449 3.551 10 O -0.614 6.614 11 N -0.591 5.591 12 C -0.327 4.327 13 H 0.054 0.946 14 C -0.017 4.017 15 N -0.937 5.937 16 Si 0.964 3.036 17 H -0.257 1.257 18 H -0.227 1.227 19 H -0.279 1.279 20 C 0.090 3.910 21 N -0.610 5.610 22 C 0.601 3.399 23 O -0.565 6.565 24 C -0.301 4.301 25 C -0.061 4.061 26 C -0.159 4.159 27 C -0.244 4.244 28 S 0.238 5.762 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.355 0.645 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.390 0.610 38 H 0.278 0.722 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.151 0.849 42 H 0.166 0.834 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 18.110 -15.864 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 H 0.112 0.888 4 C -0.162 4.162 5 C -0.025 4.025 6 H 0.111 0.889 7 N -0.309 5.309 8 C -0.073 4.073 9 C 0.237 3.763 10 O -0.498 6.498 11 N -0.233 5.233 12 C -0.456 4.456 13 H 0.073 0.927 14 C -0.215 4.215 15 N -0.578 5.578 16 Si 0.784 3.216 17 H -0.182 1.182 18 H -0.150 1.150 19 H -0.204 1.204 20 C -0.035 4.035 21 N -0.343 5.343 22 C 0.391 3.609 23 O -0.447 6.447 24 C -0.421 4.421 25 C -0.096 4.096 26 C -0.189 4.189 27 C -0.381 4.381 28 S 0.507 5.493 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.176 0.824 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.168 0.832 42 H 0.183 0.817 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.097 17.058 -14.995 24.466 hybrid contribution 0.107 0.510 -0.781 0.938 sum -8.990 17.568 -15.775 25.265 Atomic orbital electron populations 1.22054 0.94031 1.01909 1.03418 1.22052 0.95224 0.96036 0.83358 0.88806 1.23081 0.94610 1.01027 0.97484 1.22485 0.97358 0.91067 0.91545 0.88878 1.59929 1.08873 1.38322 1.23810 1.21756 0.89525 0.93915 1.02092 1.20999 0.81910 0.89480 0.83876 1.90562 1.52080 1.54658 1.52531 1.42024 1.07013 1.22404 1.51867 1.18995 0.93172 1.00482 1.32949 0.92743 1.26128 0.99546 0.98455 0.97359 1.69813 1.18295 1.26383 1.43289 0.85378 0.77502 0.79745 0.78976 1.18175 1.15008 1.20413 1.22415 0.86882 0.97335 0.96838 1.48485 1.28264 1.48534 1.09044 1.16803 0.82828 0.80380 0.80864 1.90744 1.26167 1.45508 1.82296 1.24662 1.06115 1.12044 0.99262 1.20964 1.00199 0.97430 0.90974 1.20232 0.95768 0.99996 1.02869 1.26068 1.04250 1.06585 1.01201 1.83633 1.21146 1.38615 1.05923 0.89609 0.91842 0.94048 0.90416 0.86764 0.82385 0.89668 0.86583 0.77410 0.91246 0.89352 0.90400 0.83154 0.81685 0.79260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.60 71.98 0.62 -2.44 16 2 C 0.14 2.39 3.76 45.47 0.17 2.56 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.12 -1.88 5.91 31.99 0.19 -1.69 16 5 C 0.09 1.44 3.25 46.11 0.15 1.59 16 6 H 0.09 1.13 7.86 -2.39 -0.02 1.11 16 7 N -0.68 -16.33 5.93 -489.44 -2.90 -19.23 16 8 C 0.06 1.50 6.03 85.56 0.52 2.02 16 9 C 0.45 18.60 7.82 87.65 0.69 19.29 16 10 O -0.61 -32.12 15.78 -3.07 -0.05 -32.17 16 11 N -0.59 -26.09 5.09 -306.98 -1.56 -27.65 16 12 C -0.33 -18.48 10.16 84.04 0.85 -17.63 16 13 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 14 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 15 N -0.94 -55.54 13.96 21.66 0.30 -55.23 16 16 Si 0.96 37.07 27.74 68.60 1.90 38.97 16 17 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 18 H -0.23 -7.11 6.52 99.48 0.65 -6.46 16 19 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 20 C 0.09 1.70 4.92 86.68 0.43 2.12 16 21 N -0.61 -13.12 3.25 -792.17 -2.57 -15.69 16 22 C 0.60 15.61 7.60 86.42 0.66 16.27 16 23 O -0.57 -17.58 14.56 -4.33 -0.06 -17.65 16 24 C -0.30 -6.82 6.38 24.07 0.15 -6.67 16 25 C -0.06 -1.23 10.01 21.71 0.22 -1.02 16 26 C -0.16 -2.51 10.15 21.08 0.21 -2.30 16 27 C -0.24 -3.73 10.92 66.81 0.73 -3.00 16 28 S 0.24 4.31 18.43 -56.49 -1.04 3.27 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.54 6.09 -2.39 -0.01 1.52 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.44 8.06 -2.39 -0.02 1.42 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.36 9.19 8.16 -89.69 -0.73 8.46 16 35 H 0.09 1.63 8.08 -2.38 -0.02 1.61 16 36 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.39 13.95 5.76 -92.71 -0.53 13.42 16 38 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.09 1.40 7.01 -2.38 -0.02 1.38 16 40 H 0.08 1.75 6.70 -2.39 -0.02 1.74 16 41 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -79.51 364.78 -0.20 -79.72 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.27 Total: 36.98 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.05 Total: 8.69 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -6.74 Total: -117.81 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.11 Total: -49.82 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 1.90 Total: 38.97 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.04 Total: 3.27 kcal Total: -79.51 -0.20 -79.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507301093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.573 kcal (2) G-P(sol) polarization free energy of solvation -79.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds