Wall clock time and date at job start Tue Mar 31 2020 20:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87591 * 2 1 4 4 C 1.54324 * 109.88555 * 238.81889 * 2 1 3 5 5 C 1.55158 * 102.94229 * 262.77508 * 4 2 1 6 6 H 1.09003 * 110.99951 * 82.61286 * 5 4 2 7 7 N 1.46496 * 111.00515 * 206.42046 * 5 4 2 8 8 C 1.36933 * 120.00052 * 205.00285 * 7 5 4 9 9 H 1.08000 * 120.00180 * 359.97438 * 8 7 5 10 10 C 1.38819 * 119.99752 * 180.02562 * 8 7 5 11 11 N 1.31615 * 119.99927 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99829 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47367 * 60.00314 * 12 10 8 14 14 H 1.48499 * 109.46946 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47178 * 300.00127 * 12 10 8 16 16 C 1.55125 * 101.48650 * 324.33408 * 5 4 2 17 17 N 1.47023 * 109.88014 * 121.00908 * 2 1 3 18 18 C 1.34777 * 125.65057 * 300.44614 * 17 2 1 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 2 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 2 21 21 N 1.46500 * 109.46949 * 179.97438 * 20 18 17 22 22 C 1.34769 * 120.00237 * 180.02562 * 21 20 18 23 23 O 1.21701 * 119.99994 * 359.97438 * 22 21 20 24 24 C 1.46586 * 120.00255 * 179.97438 * 22 21 20 25 25 C 1.36644 * 125.45771 * 179.71665 * 24 22 21 26 26 C 1.37480 * 113.29714 * 179.80352 * 25 24 22 27 27 C 1.33811 * 115.09654 * 0.48821 * 26 25 24 28 28 S 1.70617 * 110.95946 * 359.73562 * 27 26 25 29 29 H 1.08997 * 109.47319 * 300.44163 * 1 2 3 30 30 H 1.09006 * 109.47120 * 60.44433 * 1 2 3 31 31 H 1.09001 * 109.47102 * 180.43627 * 1 2 3 32 32 H 1.08997 * 110.71674 * 21.13858 * 4 2 1 33 33 H 1.08997 * 110.71693 * 144.41420 * 4 2 1 34 34 H 0.97004 * 119.99607 * 25.00822 * 7 5 4 35 35 H 0.97003 * 119.99834 * 180.02562 * 11 10 8 36 36 H 1.09002 * 110.49591 * 278.45356 * 16 5 4 37 37 H 1.09002 * 110.34018 * 156.05540 * 16 5 4 38 38 H 1.09000 * 109.47318 * 299.99141 * 20 18 17 39 39 H 1.09000 * 109.47161 * 59.99772 * 20 18 17 40 40 H 0.97010 * 119.99909 * 359.97438 * 21 20 18 41 41 H 1.07995 * 123.35551 * 359.97438 * 25 24 22 42 42 H 1.07997 * 122.45323 * 180.20439 * 26 25 24 43 43 H 1.08004 * 124.52113 * 179.74898 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7514 -1.2416 5 6 2.3519 -2.1705 -0.6891 6 1 1.4453 -2.7748 -0.6569 7 7 3.3937 -2.8334 -1.4773 8 6 3.4568 -4.2007 -1.5165 9 1 2.7388 -4.7905 -0.9659 10 6 4.4444 -4.8288 -2.2630 11 7 5.3203 -4.1101 -2.9327 12 14 4.5309 -6.6941 -2.3158 13 1 3.2638 -7.2329 -2.8718 14 1 5.6669 -7.1127 -3.1758 15 1 4.7314 -7.2194 -0.9415 16 6 2.8613 -1.8454 0.7396 17 7 2.0299 -0.7123 1.1850 18 6 1.7752 -0.3809 2.4663 19 8 1.0790 0.5800 2.7172 20 6 2.3554 -1.2043 3.5873 21 7 1.9355 -0.6428 4.8736 22 6 2.3376 -1.2188 6.0237 23 8 3.0493 -2.2055 5.9938 24 6 1.9178 -0.6567 7.3108 25 6 2.2539 -1.1516 8.5393 26 6 1.7261 -0.4259 9.5809 27 6 0.9749 0.6211 9.2199 28 16 0.8949 0.7580 7.5211 29 1 -0.3634 0.5207 0.8860 30 1 -0.3634 0.5069 -0.8940 31 1 -0.3633 -1.0276 0.0078 32 1 1.2918 -0.7920 -2.0188 33 1 2.9657 -0.2855 -1.6177 34 1 4.0389 -2.3037 -1.9715 35 1 6.0101 -4.5491 -3.4546 36 1 3.9123 -1.5577 0.7139 37 1 2.7177 -2.7028 1.3973 38 1 1.9998 -2.2314 3.5054 39 1 3.4434 -1.1902 3.5229 40 1 1.3685 0.1440 4.8975 41 1 2.8747 -2.0242 8.6784 42 1 1.9009 -0.6846 10.6147 43 1 0.4849 1.2903 9.9116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507331091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:22 Heat of formation + Delta-G solvation = -19.002287 kcal Electronic energy + Delta-G solvation = -26061.477240 eV Core-core repulsion = 22233.807803 eV Total energy + Delta-G solvation = -3827.669437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45753 -39.63221 -37.91154 -37.46562 -34.65767 -34.23570 -32.05365 -31.37477 -30.43509 -28.48060 -27.77195 -25.54233 -25.03104 -23.91028 -22.23092 -21.37036 -20.27104 -19.88000 -19.22903 -18.55598 -17.43604 -16.81637 -16.54981 -16.15079 -15.79065 -15.70149 -15.25794 -14.75423 -14.62684 -14.20105 -13.83599 -13.43320 -13.35736 -13.23881 -13.10383 -13.01957 -12.91705 -12.65562 -12.63026 -12.45510 -11.93902 -11.89554 -11.31495 -11.24238 -11.02678 -10.80999 -10.70524 -10.36142 -10.33259 -10.08305 -9.91532 -9.79022 -9.48025 -9.18100 -9.07137 -8.95436 -8.52670 -7.15332 -5.89509 -3.20982 0.16885 1.11908 1.52939 2.06593 2.54653 2.59015 2.96609 3.24779 3.38653 3.43992 3.44128 4.35779 4.50442 4.55094 4.65419 4.94422 4.97827 5.04108 5.12348 5.14640 5.25154 5.30036 5.40528 5.53059 5.55308 5.59640 5.76210 5.78584 5.81157 5.93525 5.96782 6.04701 6.07342 6.14278 6.20349 6.35393 6.45670 6.50752 6.76209 7.19750 7.57661 7.60353 7.89702 8.08732 8.27768 9.39891 9.92231 10.26914 11.32154 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.002419 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.704850 B =11572.869365 C =13170.059326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.139 4.139 5 C 0.175 3.825 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.252 4.252 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.909 3.091 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.065 3.935 17 N -0.601 5.601 18 C 0.523 3.477 19 O -0.552 6.552 20 C 0.104 3.896 21 N -0.714 5.714 22 C 0.592 3.408 23 O -0.526 6.526 24 C -0.265 4.265 25 C -0.055 4.055 26 C -0.151 4.151 27 C -0.232 4.232 28 S 0.209 5.791 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.258 0.742 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.409 0.591 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.918 12.052 19.718 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.178 4.178 5 C 0.062 3.938 6 H 0.087 0.913 7 N -0.350 5.350 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.210 1.210 16 C -0.061 4.061 17 N -0.334 5.334 18 C 0.311 3.689 19 O -0.431 6.431 20 C -0.023 4.023 21 N -0.369 5.369 22 C 0.378 3.622 23 O -0.404 6.404 24 C -0.386 4.386 25 C -0.088 4.088 26 C -0.182 4.182 27 C -0.370 4.370 28 S 0.476 5.524 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.222 0.778 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.246 0.754 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.503 12.680 18.838 25.020 hybrid contribution 0.859 -1.482 0.955 1.961 sum -9.645 11.199 19.793 24.702 Atomic orbital electron populations 1.22139 0.94880 1.02399 1.02521 1.21546 0.94482 0.95946 0.84411 0.91037 1.23047 1.01823 0.97145 0.95746 1.21310 0.92895 0.91275 0.88289 0.91250 1.42321 1.33310 1.04079 1.55288 1.19202 1.11391 0.82432 1.25269 0.90949 1.24778 0.97834 0.98085 0.99655 1.69645 1.18808 1.34382 1.34740 0.86251 0.77123 0.85157 0.77543 1.21118 1.21621 1.21035 1.23730 0.95047 0.86961 1.00342 1.48547 1.49640 1.31002 1.04260 1.19998 0.80955 0.84922 0.83023 1.90641 1.39889 1.29265 1.83311 1.21097 1.01606 0.98115 0.81443 1.45555 1.53581 1.33159 1.04578 1.16885 0.80026 0.83185 0.82152 1.90870 1.37104 1.25374 1.87021 1.24589 1.11614 1.04786 0.97593 1.20835 0.98326 1.00024 0.89661 1.20065 1.00738 0.96381 1.01004 1.25381 1.06451 1.04251 1.00907 1.83251 1.44736 1.24551 0.99864 0.91477 0.91819 0.92359 0.89998 0.90478 0.77803 0.93217 0.90736 0.90880 0.87856 0.87894 0.75359 0.82721 0.83626 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.06 37.16 0.34 -1.70 16 2 C 0.14 1.91 3.49 -66.95 -0.23 1.68 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -2.03 6.14 -24.90 -0.15 -2.19 16 5 C 0.18 3.09 3.73 -65.67 -0.24 2.85 16 6 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 7 N -0.71 -16.21 5.24 -51.24 -0.27 -16.48 16 8 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 12 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.06 1.03 6.39 -2.41 -0.02 1.01 16 17 N -0.60 -8.68 3.08 -162.88 -0.50 -9.18 16 18 C 0.52 7.50 7.70 -10.98 -0.08 7.42 16 19 O -0.55 -8.76 14.57 5.56 0.08 -8.68 16 20 C 0.10 1.36 5.16 -5.19 -0.03 1.33 16 21 N -0.71 -8.95 5.52 -62.83 -0.35 -9.30 16 22 C 0.59 7.93 7.78 -12.90 -0.10 7.83 16 23 O -0.53 -8.69 16.84 5.19 0.09 -8.60 16 24 C -0.27 -2.88 6.45 -36.79 -0.24 -3.12 16 25 C -0.05 -0.53 10.01 -40.43 -0.40 -0.93 16 26 C -0.15 -1.10 10.15 -41.41 -0.42 -1.52 16 27 C -0.23 -1.56 10.92 29.18 0.32 -1.24 16 28 S 0.21 1.68 22.16 -107.50 -2.38 -0.70 16 29 H 0.07 0.92 6.75 -51.93 -0.35 0.57 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 33 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 34 H 0.39 9.44 7.76 -40.82 -0.32 9.12 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.13 7.48 -51.93 -0.39 0.74 16 38 H 0.10 1.32 7.85 -51.93 -0.41 0.92 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.41 4.80 6.55 -40.82 -0.27 4.53 16 41 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -31.05 375.11 -9.39 -40.44 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.90 Total: 11.86 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.51 Total: 4.47 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.39 Total: -60.93 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.17 Total: -17.28 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.38 Total: -0.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.05 -9.39 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507331091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.440 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds