Wall clock time and date at job start Tue Mar 31 2020 20:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.32334 * 2 1 4 4 C 1.54913 * 110.36563 * 237.76710 * 2 1 3 5 5 C 1.55155 * 101.57613 * 204.15144 * 4 2 1 6 6 H 1.09008 * 110.71974 * 277.13187 * 5 4 2 7 7 N 1.46505 * 110.72056 * 154.04188 * 5 4 2 8 8 C 1.36935 * 119.99895 * 154.99337 * 7 5 4 9 9 H 1.07995 * 120.00412 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99543 * 180.02562 * 8 7 5 11 11 N 1.31624 * 120.00342 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00016 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47073 * 89.99954 * 12 10 8 14 14 H 1.48501 * 109.47443 * 210.00103 * 12 10 8 15 15 H 1.48503 * 109.46951 * 330.00115 * 12 10 8 16 16 C 1.54321 * 102.94675 * 35.49999 * 5 4 2 17 17 N 1.47185 * 107.29122 * 337.71557 * 16 5 4 18 18 C 1.34776 * 125.73302 * 179.03795 * 17 16 5 19 19 O 1.21279 * 120.00188 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00155 * 0.06025 * 18 17 16 21 21 N 1.46504 * 109.47273 * 180.02562 * 20 18 17 22 22 C 1.34780 * 119.99673 * 179.97438 * 21 20 18 23 23 O 1.21696 * 120.00644 * 0.02562 * 22 21 20 24 24 C 1.46590 * 119.99499 * 180.02562 * 22 21 20 25 25 C 1.36651 * 125.45737 * 180.02562 * 24 22 21 26 26 C 1.37470 * 113.29497 * 179.97438 * 25 24 22 27 27 C 1.33810 * 115.10208 * 359.97438 * 26 25 24 28 28 S 1.70616 * 110.95591 * 359.76355 * 27 26 25 29 29 H 1.09005 * 109.46741 * 180.69893 * 1 2 3 30 30 H 1.08996 * 109.47202 * 300.70129 * 1 2 3 31 31 H 1.08998 * 109.46951 * 60.70246 * 1 2 3 32 32 H 1.09000 * 111.00276 * 322.21880 * 4 2 1 33 33 H 1.08993 * 111.00681 * 86.04064 * 4 2 1 34 34 H 0.97005 * 119.99620 * 334.99840 * 7 5 4 35 35 H 0.96997 * 119.99970 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.88188 * 97.22324 * 16 5 4 37 37 H 1.09000 * 109.88301 * 218.23603 * 16 5 4 38 38 H 1.09003 * 109.47608 * 300.00243 * 20 18 17 39 39 H 1.09007 * 109.47384 * 60.00396 * 20 18 17 40 40 H 0.96993 * 120.00145 * 359.97438 * 21 20 18 41 41 H 1.08000 * 123.34671 * 359.93931 * 25 24 22 42 42 H 1.07995 * 122.44543 * 179.97438 * 26 25 24 43 43 H 1.08001 * 124.52295 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0692 -0.7746 -1.2285 5 6 3.4778 -1.1989 -0.7354 6 1 4.1945 -0.3892 -0.8726 7 7 3.9269 -2.4090 -1.4285 8 6 5.2653 -2.6705 -1.5519 9 1 5.9899 -1.9850 -1.1379 10 6 5.6907 -3.8168 -2.2091 11 7 4.8077 -4.6520 -2.7141 12 14 7.5166 -4.1740 -2.3769 13 1 7.9739 -4.9723 -1.2112 14 1 7.7586 -4.9391 -3.6264 15 1 8.2688 -2.8946 -2.4264 16 6 3.2494 -1.4775 0.7652 17 7 2.0431 -0.7372 1.1690 18 6 1.4972 -0.7339 2.4012 19 8 0.4969 -0.0838 2.6197 20 6 2.1301 -1.5375 3.5079 21 7 1.3539 -1.3693 4.7389 22 6 1.7352 -1.9999 5.8674 23 8 2.7245 -2.7086 5.8639 24 6 0.9582 -1.8321 7.0991 25 6 1.2425 -2.4158 8.3015 26 6 0.3472 -2.0860 9.2911 27 6 -0.6364 -1.2606 8.9147 28 16 -0.4841 -0.8408 7.2680 29 1 -0.3633 -1.0277 0.0125 30 1 -0.3633 0.5247 0.8836 31 1 -0.3633 0.5029 -0.8962 32 1 1.4512 -1.6466 -1.4425 33 1 2.1393 -0.1244 -2.1004 34 1 3.2760 -3.0249 -1.8001 35 1 5.1050 -5.4528 -3.1736 36 1 3.1014 -2.5455 0.9256 37 1 4.1077 -1.1317 1.3412 38 1 2.1449 -2.5912 3.2292 39 1 3.1505 -1.1905 3.6711 40 1 0.5656 -0.8042 4.7419 41 1 2.0863 -3.0715 8.4584 42 1 0.4317 -2.4653 10.2987 43 1 -1.4197 -0.9041 9.5673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507331092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:24 Heat of formation + Delta-G solvation = -16.853345 kcal Electronic energy + Delta-G solvation = -26087.806366 eV Core-core repulsion = 22260.230114 eV Total energy + Delta-G solvation = -3827.576252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45125 -39.61918 -37.87913 -37.42149 -34.66423 -34.21919 -32.02357 -31.44550 -30.41403 -28.56346 -27.73840 -25.44156 -24.99552 -23.91013 -22.14902 -21.27277 -20.36716 -19.95273 -19.22502 -18.45263 -17.38633 -16.75192 -16.53949 -16.26300 -15.79765 -15.68883 -15.36981 -14.72931 -14.65464 -14.08669 -13.75391 -13.68186 -13.37904 -13.26486 -13.09078 -13.00945 -12.73808 -12.62478 -12.61073 -12.16633 -11.96637 -11.85966 -11.31342 -11.30264 -11.08861 -10.83633 -10.72907 -10.37114 -10.34495 -10.10674 -9.80375 -9.65405 -9.46282 -9.16757 -9.05468 -8.94427 -8.49036 -7.15714 -5.89238 -3.20854 0.17966 1.12942 1.53935 2.07728 2.56085 2.60973 2.98012 3.26591 3.38115 3.43787 3.44988 4.37435 4.50490 4.55422 4.66477 4.95448 4.99700 5.07044 5.13058 5.13409 5.25480 5.32998 5.41231 5.52543 5.59895 5.60859 5.76536 5.80172 5.82251 5.96241 5.98923 6.03656 6.06995 6.14777 6.32921 6.36561 6.45408 6.57612 6.77171 7.21506 7.58077 7.62267 7.91375 8.11538 8.27907 9.40092 9.92636 10.27218 11.32493 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.002443 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.473551 B =11457.636469 C =13084.581643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.070 0.930 7 N -0.712 5.712 8 C -0.252 4.252 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.909 3.091 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.066 3.934 17 N -0.601 5.601 18 C 0.524 3.476 19 O -0.550 6.550 20 C 0.104 3.896 21 N -0.714 5.714 22 C 0.591 3.409 23 O -0.526 6.526 24 C -0.265 4.265 25 C -0.055 4.055 26 C -0.151 4.151 27 C -0.232 4.232 28 S 0.209 5.791 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.408 0.592 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.472 9.788 18.981 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.061 3.939 6 H 0.088 0.912 7 N -0.351 5.351 8 C -0.382 4.382 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.060 4.060 17 N -0.335 5.335 18 C 0.312 3.688 19 O -0.430 6.430 20 C -0.023 4.023 21 N -0.368 5.368 22 C 0.377 3.623 23 O -0.404 6.404 24 C -0.386 4.386 25 C -0.089 4.089 26 C -0.182 4.182 27 C -0.370 4.370 28 S 0.476 5.524 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.246 0.754 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.947 10.525 18.093 24.612 hybrid contribution 1.281 -1.258 0.914 2.015 sum -11.665 9.267 19.008 24.151 Atomic orbital electron populations 1.22151 0.94204 1.02622 1.02990 1.21913 0.94842 0.95377 0.84478 0.90734 1.23193 0.97925 1.00378 0.96181 1.21156 0.93261 0.91259 0.88260 0.91248 1.42386 1.05328 1.22543 1.64869 1.19250 0.83257 1.04873 1.30870 0.90868 1.24785 0.97800 0.97320 1.00505 1.69658 1.32384 1.13609 1.41905 0.86180 0.84711 0.77950 0.77248 1.21509 1.21702 1.20622 1.23516 0.84970 0.96772 1.00751 1.48585 1.28724 1.47741 1.08429 1.19978 0.84090 0.81932 0.82777 1.90602 1.25764 1.44752 1.81891 1.21098 0.96221 1.01854 0.83127 1.45549 1.31698 1.50662 1.08939 1.16889 0.83926 0.79732 0.81728 1.90869 1.26112 1.38630 1.84749 1.24595 1.04226 1.10810 0.98926 1.20835 0.99712 0.98232 0.90093 1.20060 0.95525 1.01210 1.01384 1.25379 1.05056 1.05308 1.01272 1.83242 1.21279 1.43437 1.04433 0.92744 0.89977 0.92215 0.90452 0.90006 0.77820 0.93274 0.90481 0.91768 0.87833 0.87993 0.75370 0.82726 0.83636 0.81331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.66 37.16 0.32 -1.78 16 2 C 0.14 1.87 3.76 -66.42 -0.25 1.62 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -2.04 6.13 -24.58 -0.15 -2.19 16 5 C 0.17 3.05 3.61 -66.10 -0.24 2.82 16 6 H 0.07 1.22 8.09 -51.92 -0.42 0.80 16 7 N -0.71 -16.32 5.16 -51.65 -0.27 -16.58 16 8 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 12 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.07 1.05 6.26 -2.98 -0.02 1.03 16 17 N -0.60 -8.73 3.25 -162.92 -0.53 -9.26 16 18 C 0.52 7.54 7.70 -10.99 -0.08 7.46 16 19 O -0.55 -8.60 13.36 5.56 0.07 -8.52 16 20 C 0.10 1.37 5.35 -5.19 -0.03 1.34 16 21 N -0.71 -9.05 5.52 -62.82 -0.35 -9.39 16 22 C 0.59 8.03 7.78 -12.89 -0.10 7.93 16 23 O -0.53 -8.80 16.84 5.19 0.09 -8.72 16 24 C -0.27 -2.91 6.45 -36.79 -0.24 -3.15 16 25 C -0.06 -0.54 10.01 -40.43 -0.40 -0.94 16 26 C -0.15 -1.12 10.15 -41.42 -0.42 -1.54 16 27 C -0.23 -1.58 10.92 29.18 0.32 -1.26 16 28 S 0.21 1.70 22.16 -107.50 -2.38 -0.68 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.16 5.99 -51.93 -0.31 0.85 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.39 9.56 7.76 -40.82 -0.32 9.24 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.41 4.82 6.55 -40.82 -0.27 4.56 16 41 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -31.05 374.10 -9.48 -40.53 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.92 Total: 12.22 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.54 Total: 4.37 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.42 Total: -61.35 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.16 Total: -17.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.38 Total: -0.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.05 -9.48 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507331092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.677 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds