Wall clock time and date at job start Tue Mar 31 2020 20:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.32549 * 2 1 4 4 C 1.54911 * 110.36667 * 237.64967 * 2 1 3 5 5 C 1.55157 * 101.57988 * 204.15371 * 4 2 1 6 6 H 1.09006 * 110.86864 * 277.06264 * 5 4 2 7 7 N 1.46497 * 110.72131 * 153.86536 * 5 4 2 8 8 C 1.36935 * 120.00298 * 160.02075 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54318 * 102.94398 * 35.49610 * 5 4 2 17 17 N 1.47017 * 107.27617 * 337.80963 * 16 5 4 18 18 C 1.34777 * 125.65273 * 178.90233 * 17 16 5 19 19 O 1.21284 * 119.99914 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99868 * 0.02562 * 18 17 16 21 21 N 1.46502 * 109.46974 * 180.02562 * 20 18 17 22 22 C 1.34768 * 119.99514 * 180.02562 * 21 20 18 23 23 O 1.21634 * 120.00611 * 359.97438 * 22 21 20 24 24 C 1.47195 * 119.99674 * 180.02562 * 22 21 20 25 25 C 1.44425 * 123.46438 * 179.97438 * 24 22 21 26 26 C 1.32762 * 113.08942 * 180.02562 * 25 24 22 27 27 S 1.75507 * 110.57274 * 0.02562 * 26 25 24 28 28 C 1.36007 * 123.46278 * 359.70696 * 24 22 21 29 29 H 1.08999 * 109.46901 * 299.21809 * 1 2 3 30 30 H 1.09001 * 109.47102 * 59.21416 * 1 2 3 31 31 H 1.08996 * 109.47124 * 179.21806 * 1 2 3 32 32 H 1.09001 * 111.00598 * 86.07523 * 4 2 1 33 33 H 1.09000 * 111.00060 * 322.22390 * 4 2 1 34 34 H 0.96992 * 120.00013 * 340.01974 * 7 5 4 35 35 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 36 36 H 1.09005 * 109.88035 * 97.22977 * 16 5 4 37 37 H 1.09004 * 109.88421 * 218.23386 * 16 5 4 38 38 H 1.09000 * 109.47331 * 300.00364 * 20 18 17 39 39 H 1.08998 * 109.46648 * 60.00295 * 20 18 17 40 40 H 0.96996 * 119.99756 * 0.02562 * 21 20 18 41 41 H 1.08007 * 123.45466 * 0.02562 * 25 24 22 42 42 H 1.07998 * 124.71845 * 179.97438 * 26 25 24 43 43 H 1.08007 * 124.58957 * 359.97429 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0691 -0.7771 -1.2269 5 6 3.4778 -1.2005 -0.7330 6 1 4.1968 -0.3931 -0.8719 7 7 3.9250 -2.4143 -1.4206 8 6 5.2568 -2.7307 -1.4546 9 1 5.9777 -2.0853 -0.9747 10 6 5.6805 -3.8811 -2.1056 11 7 4.8022 -4.6675 -2.6908 12 14 7.4975 -4.3124 -2.1526 13 1 8.0028 -4.4782 -0.7660 14 1 7.6863 -5.5796 -2.9036 15 1 8.2478 -3.2220 -2.8258 16 6 3.2494 -1.4760 0.7682 17 7 2.0432 -0.7372 1.1691 18 6 1.4965 -0.7349 2.4010 19 8 0.4953 -0.0860 2.6189 20 6 2.1293 -1.5387 3.5076 21 7 1.3523 -1.3716 4.7383 22 6 1.7339 -2.0017 5.8668 23 8 2.7231 -2.7094 5.8636 24 6 0.9529 -1.8343 7.1032 25 6 1.2930 -2.4737 8.3528 26 6 0.4485 -2.1807 9.3343 27 16 -0.8106 -1.0999 8.7626 28 6 -0.1603 -1.0574 7.1877 29 1 -0.3633 0.5016 0.8969 30 1 -0.3633 0.5260 -0.8829 31 1 -0.3633 -1.0275 -0.0140 32 1 2.1398 -0.1285 -2.1000 33 1 1.4511 -1.6495 -1.4392 34 1 3.2777 -2.9938 -1.8518 35 1 3.8588 -4.4433 -2.6668 36 1 3.1014 -2.5436 0.9308 37 1 4.1077 -1.1290 1.3436 38 1 2.1449 -2.5922 3.2284 39 1 3.1493 -1.1911 3.6715 40 1 0.5632 -0.8075 4.7408 41 1 2.1469 -3.1235 8.4760 42 1 0.5249 -2.5561 10.3441 43 1 -0.5774 -0.4924 6.3671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507338109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:37 Heat of formation + Delta-G solvation = -17.824859 kcal Electronic energy + Delta-G solvation = -26178.513511 eV Core-core repulsion = 22350.895131 eV Total energy + Delta-G solvation = -3827.618380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54295 -39.73891 -37.71011 -37.02231 -34.75926 -34.46343 -32.10554 -31.48860 -30.42442 -28.36370 -27.64298 -25.51510 -25.04988 -23.74400 -22.21856 -21.35816 -20.53692 -19.89494 -18.97756 -18.29611 -17.54859 -17.36301 -16.76374 -16.17468 -15.97826 -15.56052 -15.17459 -14.72216 -14.58668 -14.13030 -13.80228 -13.57310 -13.44464 -13.38887 -13.26451 -13.11404 -12.84859 -12.74265 -12.64132 -12.24367 -12.03190 -11.97278 -11.49089 -11.21103 -11.09534 -10.76973 -10.65492 -10.42569 -10.17509 -10.03798 -9.69976 -9.46681 -9.33961 -9.28091 -9.06585 -8.79471 -8.55681 -7.23240 -6.21980 -3.25370 0.40889 1.16445 1.53939 1.69983 2.50916 2.61963 3.14327 3.25622 3.47745 3.50365 3.67861 4.32468 4.40920 4.58728 4.69616 4.89100 4.91517 4.98134 5.02562 5.04244 5.22689 5.31309 5.33759 5.45460 5.48809 5.55489 5.66907 5.71837 5.72380 5.90569 5.91364 5.92663 6.01954 6.08947 6.22961 6.28147 6.34601 6.50809 6.68690 7.27818 7.54468 7.69017 7.98182 8.06998 8.63375 9.06043 9.92888 10.05440 11.25539 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.002389 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.671863 B =11716.947985 C =13407.889557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.178 3.822 6 H 0.068 0.932 7 N -0.724 5.724 8 C -0.342 4.342 9 H 0.068 0.932 10 C -0.039 4.039 11 N -0.938 5.938 12 Si 1.079 2.921 13 H -0.293 1.293 14 H -0.284 1.284 15 H -0.294 1.294 16 C 0.068 3.932 17 N -0.602 5.602 18 C 0.525 3.475 19 O -0.551 6.551 20 C 0.104 3.896 21 N -0.712 5.712 22 C 0.578 3.422 23 O -0.533 6.533 24 C -0.152 4.152 25 C -0.084 4.084 26 C -0.237 4.237 27 S 0.185 5.815 28 C -0.210 4.210 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.370 0.630 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.409 0.591 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.425 10.168 19.615 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.066 3.934 6 H 0.086 0.914 7 N -0.365 5.365 8 C -0.473 4.473 9 H 0.086 0.914 10 C -0.237 4.237 11 N -0.582 5.582 12 Si 0.909 3.091 13 H -0.220 1.220 14 H -0.210 1.210 15 H -0.221 1.221 16 C -0.058 4.058 17 N -0.335 5.335 18 C 0.313 3.687 19 O -0.431 6.431 20 C -0.023 4.023 21 N -0.367 5.367 22 C 0.363 3.637 23 O -0.410 6.410 24 C -0.170 4.170 25 C -0.113 4.113 26 C -0.372 4.372 27 S 0.450 5.550 28 C -0.348 4.348 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.204 0.796 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.247 0.753 41 H 0.173 0.827 42 H 0.188 0.812 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.194 9.655 19.973 25.315 hybrid contribution -0.305 0.512 -0.329 0.681 sum -12.499 10.167 19.644 25.406 Atomic orbital electron populations 1.22167 0.94121 1.02558 1.03239 1.21901 0.94900 0.95379 0.84349 0.90643 1.23167 0.97704 1.00364 0.96428 1.21094 0.93095 0.90841 0.88349 0.91398 1.42388 1.06007 1.24288 1.63845 1.20036 0.83779 1.08996 1.34467 0.91448 1.25821 1.06875 0.93656 0.97360 1.70904 1.02326 1.39290 1.45703 0.83256 0.73662 0.76140 0.75994 1.22042 1.20976 1.22132 1.23431 0.85039 0.96722 1.00614 1.48552 1.28626 1.47828 1.08522 1.20024 0.84044 0.81856 0.82749 1.90588 1.25754 1.44860 1.81902 1.21067 0.96256 1.01661 0.83306 1.45528 1.31597 1.50813 1.08800 1.17557 0.84166 0.79572 0.82386 1.90832 1.26486 1.38580 1.85137 1.20270 0.97995 1.03356 0.95394 1.21162 1.00444 0.99842 0.89815 1.25531 1.00742 1.06774 1.04167 1.83079 1.27656 1.44072 1.00156 1.25764 1.00628 1.04417 1.03996 0.89761 0.92181 0.92787 0.89956 0.90584 0.79575 0.93309 0.90599 0.91707 0.88015 0.88119 0.75294 0.82664 0.81197 0.81051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.71 37.16 0.32 -1.78 16 2 C 0.14 1.88 3.77 -66.41 -0.25 1.63 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -2.04 6.11 -24.58 -0.15 -2.19 16 5 C 0.18 3.20 3.59 -66.10 -0.24 2.96 16 6 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 7 N -0.72 -16.69 5.17 -51.65 -0.27 -16.96 16 8 C -0.34 -9.02 9.98 -15.06 -0.15 -9.17 16 9 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 10 C -0.04 -1.08 5.50 -17.43 -0.10 -1.17 16 11 N -0.94 -27.96 13.70 55.49 0.76 -27.20 16 12 Si 1.08 25.03 29.92 -169.99 -5.09 19.95 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.07 1.10 6.24 -3.07 -0.02 1.08 16 17 N -0.60 -8.80 3.24 -163.05 -0.53 -9.33 16 18 C 0.53 7.54 7.70 -10.98 -0.08 7.46 16 19 O -0.55 -8.49 13.32 5.55 0.07 -8.42 16 20 C 0.10 1.38 5.35 -5.19 -0.03 1.35 16 21 N -0.71 -8.80 5.50 -62.64 -0.34 -9.15 16 22 C 0.58 7.79 7.79 -12.63 -0.10 7.70 16 23 O -0.53 -9.01 16.80 5.25 0.09 -8.92 16 24 C -0.15 -1.65 5.98 -104.63 -0.63 -2.27 16 25 C -0.08 -0.81 10.10 -39.02 -0.39 -1.20 16 26 C -0.24 -1.71 11.12 28.86 0.32 -1.39 16 27 S 0.19 1.20 23.02 -107.50 -2.48 -1.27 16 28 C -0.21 -1.76 10.38 29.93 0.31 -1.45 16 29 H 0.08 1.18 5.89 -51.93 -0.31 0.88 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 34 H 0.37 8.89 6.55 -40.82 -0.27 8.62 16 35 H 0.26 7.46 6.77 -40.82 -0.28 7.19 16 36 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.41 4.52 5.93 -40.82 -0.24 4.28 16 41 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.17 1.16 7.01 -52.48 -0.37 0.79 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -32.36 371.46 -9.08 -41.44 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.72 Total: 12.70 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.18 Total: 1.56 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.38 Total: -62.63 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.16 Total: -17.34 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.09 Total: 19.95 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.48 Total: -1.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.36 -9.08 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507338109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.615 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds