Wall clock time and date at job start Tue Mar 31 2020 20:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.32855 * 2 1 4 4 C 1.54910 * 110.37017 * 237.64220 * 2 1 3 5 5 C 1.55152 * 101.58567 * 204.15225 * 4 2 1 6 6 H 1.08998 * 110.87198 * 277.07553 * 5 4 2 7 7 N 1.46493 * 110.72059 * 153.86549 * 5 4 2 8 8 C 1.34781 * 120.00247 * 160.02373 * 7 5 4 9 9 O 1.21701 * 119.99324 * 0.02562 * 8 7 5 10 10 C 1.46670 * 120.00263 * 179.97438 * 8 7 5 11 11 C 1.37878 * 126.23326 * 180.02562 * 10 8 7 12 12 C 1.39833 * 107.08320 * 180.24911 * 11 10 8 13 13 C 1.35448 * 107.86759 * 359.60247 * 12 11 10 14 14 N 1.35539 * 108.87210 * 0.40419 * 13 12 11 15 15 H 0.96991 * 125.67749 * 179.75497 * 14 13 12 16 16 C 1.54324 * 102.93860 * 35.50143 * 5 4 2 17 17 N 1.47016 * 107.27663 * 337.80875 * 16 5 4 18 18 C 1.34774 * 125.65351 * 178.97582 * 17 16 5 19 19 O 1.21280 * 120.00266 * 179.97438 * 18 17 16 20 20 C 1.50705 * 119.99472 * 359.97438 * 18 17 16 21 21 S 1.81012 * 109.46774 * 180.02562 * 20 18 17 22 22 C 1.76203 * 99.99758 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99858 * 0.02562 * 22 21 20 24 24 C 1.38797 * 119.99814 * 179.97438 * 22 21 20 25 25 N 1.31635 * 119.99903 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99907 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47331 * 90.00073 * 26 24 22 28 28 H 1.48502 * 109.47325 * 209.99739 * 26 24 22 29 29 H 1.48496 * 109.47385 * 329.99343 * 26 24 22 30 30 H 1.08994 * 109.47303 * 299.21780 * 1 2 3 31 31 H 1.08995 * 109.46854 * 59.22190 * 1 2 3 32 32 H 1.09008 * 109.46980 * 179.22166 * 1 2 3 33 33 H 1.08998 * 110.99962 * 86.07579 * 4 2 1 34 34 H 1.09000 * 110.99928 * 322.22879 * 4 2 1 35 35 H 0.97000 * 120.00077 * 340.02363 * 7 5 4 36 36 H 1.08002 * 126.45376 * 359.97438 * 11 10 8 37 37 H 1.08005 * 126.06468 * 179.72830 * 12 11 10 38 38 H 1.08002 * 125.56642 * 180.15946 * 13 12 11 39 39 H 1.09007 * 109.88292 * 97.22723 * 16 5 4 40 40 H 1.09007 * 109.87937 * 218.23259 * 16 5 4 41 41 H 1.09004 * 109.47078 * 299.99383 * 20 18 17 42 42 H 1.08992 * 109.47503 * 60.00239 * 20 18 17 43 43 H 0.97003 * 119.99652 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7772 -1.2267 5 6 3.4778 -1.2005 -0.7329 6 1 4.1968 -0.3932 -0.8716 7 7 3.9250 -2.4143 -1.4204 8 6 5.2359 -2.7258 -1.4538 9 8 6.0480 -1.9989 -0.9123 10 6 5.6836 -3.9414 -2.1417 11 6 6.9853 -4.3817 -2.2541 12 6 6.9548 -5.5704 -2.9898 13 6 5.6629 -5.8346 -3.2993 14 7 4.8807 -4.8504 -2.7927 15 1 3.9158 -4.7958 -2.8751 16 6 3.2493 -1.4760 0.7683 17 7 2.0431 -0.7372 1.1691 18 6 1.4971 -0.7338 2.4013 19 8 0.4964 -0.0843 2.6194 20 6 2.1303 -1.5371 3.5081 21 16 1.1712 -1.3292 5.0291 22 6 2.1070 -2.3461 6.1222 23 1 2.9847 -2.8617 5.7616 24 6 1.7166 -2.4837 7.4470 25 7 2.4159 -3.2431 8.2638 26 14 0.1988 -1.5913 8.0709 27 1 -0.9942 -2.4567 7.8888 28 1 0.3668 -1.2771 9.5125 29 1 0.0170 -0.3306 7.3076 30 1 -0.3633 0.5016 0.8969 31 1 -0.3633 0.5259 -0.8829 32 1 -0.3633 -1.0277 -0.0140 33 1 2.1399 -0.1286 -2.0999 34 1 1.4511 -1.6496 -1.4390 35 1 3.2777 -2.9939 -1.8516 36 1 7.8635 -3.8971 -1.8536 37 1 7.8095 -6.1724 -3.2612 38 1 5.3134 -6.6878 -3.8618 39 1 3.1013 -2.5436 0.9310 40 1 4.1077 -1.1290 1.3437 41 1 2.1451 -2.5909 3.2296 42 1 3.1505 -1.1900 3.6712 43 1 2.1428 -3.3395 9.1896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511221402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:44 Heat of formation + Delta-G solvation = -18.069398 kcal Electronic energy + Delta-G solvation = -26090.332116 eV Core-core repulsion = 22262.703132 eV Total energy + Delta-G solvation = -3827.628984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66483 -40.45110 -39.20989 -37.38299 -34.66826 -32.44038 -32.35699 -31.56056 -30.66753 -29.15296 -28.76993 -25.99740 -25.60237 -23.97340 -22.27806 -21.56516 -20.86817 -20.45890 -19.47705 -18.96697 -17.61411 -17.13449 -16.68679 -16.17562 -15.74563 -15.42048 -15.16853 -14.93690 -14.44730 -14.29955 -14.13238 -14.01537 -13.76238 -13.60117 -13.31082 -12.98511 -12.93915 -12.79704 -12.66682 -12.41658 -12.25457 -12.11055 -11.78534 -11.35907 -11.26255 -11.14701 -11.00855 -10.60031 -10.46814 -9.85234 -9.72285 -9.40806 -9.26564 -9.00105 -8.64806 -8.62934 -8.50492 -6.92046 -6.28246 -4.00239 1.07886 2.36868 2.46861 2.65987 2.75716 2.91885 3.04268 3.20239 3.32781 3.50286 3.59539 4.00237 4.21717 4.33241 4.46734 4.57428 4.64744 4.68255 4.83440 4.94995 4.97100 5.06855 5.10436 5.10805 5.30683 5.31777 5.39772 5.53789 5.55772 5.60732 5.68634 5.77312 5.79518 5.97603 5.98614 6.02460 6.17878 6.28981 6.51023 6.51634 6.88254 7.05952 7.52574 7.76492 7.94905 8.41599 8.43038 9.17668 10.81075 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.002672 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.472946 B =10476.320171 C =12163.898729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.079 0.921 4 C -0.135 4.135 5 C 0.138 3.862 6 H 0.110 0.890 7 N -0.724 5.724 8 C 0.591 3.409 9 O -0.520 6.520 10 C -0.060 4.060 11 C -0.102 4.102 12 C -0.212 4.212 13 C 0.025 3.975 14 N -0.541 5.541 15 H 0.415 0.585 16 C 0.090 3.910 17 N -0.621 5.621 18 C 0.551 3.449 19 O -0.512 6.512 20 C -0.119 4.119 21 S -0.141 6.141 22 C -0.521 4.521 23 H 0.088 0.912 24 C 0.095 3.905 25 N -0.880 5.880 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.396 0.604 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.172 0.828 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -2.140 -29.149 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.174 4.174 5 C 0.033 3.967 6 H 0.128 0.872 7 N -0.375 5.375 8 C 0.379 3.621 9 O -0.395 6.395 10 C -0.172 4.172 11 C -0.129 4.129 12 C -0.237 4.237 13 C -0.111 4.111 14 N -0.138 5.138 15 H 0.252 0.748 16 C -0.035 4.035 17 N -0.359 5.359 18 C 0.340 3.660 19 O -0.387 6.387 20 C -0.270 4.270 21 S 0.085 5.915 22 C -0.668 4.668 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.517 5.517 26 Si 0.682 3.318 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.189 0.811 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.267 -0.653 -28.128 28.226 hybrid contribution -0.019 -1.106 -0.033 1.107 sum 2.247 -1.759 -28.161 28.305 Atomic orbital electron populations 1.22180 0.93398 1.02826 1.03899 1.21806 0.95738 0.95511 0.83432 0.90348 1.23185 0.94525 1.01361 0.98303 1.21958 0.96570 0.87466 0.90738 0.87220 1.45824 1.07597 1.26608 1.57512 1.17104 0.82089 0.83745 0.79175 1.90889 1.53113 1.50295 1.45207 1.20383 0.91841 0.95594 1.09415 1.21396 0.95007 0.96343 1.00132 1.20953 0.96454 0.99844 1.06406 1.22078 0.91278 0.94663 1.03114 1.42022 1.09319 1.19602 1.42820 0.74773 1.22408 0.88447 0.97461 0.95164 1.48475 1.28365 1.49696 1.09358 1.19935 0.83616 0.81254 0.81191 1.90640 1.24580 1.42554 1.80903 1.23283 1.03961 1.02302 0.97422 1.84729 1.39435 1.65510 1.01814 1.22309 1.15308 1.32452 0.96751 0.89408 1.24716 0.96821 0.94259 0.95526 1.69945 1.38913 1.37119 1.05699 0.86730 0.83157 0.82515 0.79417 1.19242 1.19923 1.15903 0.88880 0.92251 0.92633 0.89039 0.89911 0.77012 0.83330 0.83772 0.81109 0.90949 0.90205 0.88787 0.88510 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 8.71 37.16 0.32 -1.54 16 2 C 0.14 1.46 3.77 -66.41 -0.25 1.21 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.14 -0.92 6.11 -24.58 -0.15 -1.07 16 5 C 0.14 1.18 3.24 -66.10 -0.21 0.96 16 6 H 0.11 1.03 7.69 -51.93 -0.40 0.63 16 7 N -0.72 -5.30 5.13 -53.34 -0.27 -5.58 16 8 C 0.59 6.11 7.78 -12.85 -0.10 6.01 16 9 O -0.52 -7.43 16.61 5.19 0.09 -7.34 16 10 C -0.06 -0.53 7.06 -81.98 -0.58 -1.11 16 11 C -0.10 -0.96 10.65 -39.12 -0.42 -1.37 16 12 C -0.21 -1.52 10.81 -39.98 -0.43 -1.95 16 13 C 0.02 0.13 11.89 -16.91 -0.20 -0.07 16 14 N -0.54 -2.95 5.99 -9.39 -0.06 -3.01 16 15 H 0.42 0.95 8.19 -40.82 -0.33 0.62 16 16 C 0.09 1.03 6.23 -3.07 -0.02 1.01 16 17 N -0.62 -8.43 3.24 -163.04 -0.53 -8.96 16 18 C 0.55 10.04 7.65 -10.98 -0.08 9.96 16 19 O -0.51 -10.77 13.52 5.56 0.08 -10.70 16 20 C -0.12 -2.41 5.35 36.01 0.19 -2.21 16 21 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 22 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 23 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 24 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 25 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 26 Si 0.86 21.96 27.74 -169.99 -4.71 17.24 16 27 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 30 H 0.09 1.37 5.89 -51.93 -0.31 1.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.49 7.92 -51.93 -0.41 0.08 16 35 H 0.40 1.70 7.65 -40.82 -0.31 1.39 16 36 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.17 0.34 8.06 -52.49 -0.42 -0.09 16 39 H 0.07 0.83 8.03 -51.93 -0.42 0.42 16 40 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 41 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 42 H 0.10 1.89 8.14 -51.92 -0.42 1.46 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -37.25 373.36 -8.70 -45.95 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.98 Total: 0.85 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.71 Total: -2.37 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.08 Total: -43.65 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.16 Total: -18.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.25 -8.70 -45.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511221402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.881 kcal (2) G-P(sol) polarization free energy of solvation -37.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds