Wall clock time and date at job start Tue Mar 31 2020 20:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87907 * 2 1 4 4 C 1.54327 * 110.01289 * 121.09892 * 2 1 3 5 5 C 1.55159 * 102.94355 * 141.67795 * 4 2 1 6 6 H 1.09000 * 111.00137 * 206.42388 * 5 4 2 7 7 N 1.46495 * 111.00021 * 82.61190 * 5 4 2 8 8 C 1.34780 * 120.00013 * 155.00154 * 7 5 4 9 9 O 1.21699 * 119.99454 * 359.97438 * 8 7 5 10 10 C 1.46676 * 120.00115 * 179.97438 * 8 7 5 11 11 C 1.37875 * 126.23063 * 179.68605 * 10 8 7 12 12 C 1.39830 * 107.08448 * 179.84701 * 11 10 8 13 13 C 1.35454 * 107.86364 * 0.42364 * 12 11 10 14 14 N 1.35528 * 108.87535 * 359.73527 * 13 12 11 15 15 H 0.97001 * 125.68374 * 180.02562 * 14 13 12 16 16 C 1.55126 * 101.48551 * 324.33290 * 5 4 2 17 17 N 1.47022 * 109.88226 * 238.98328 * 2 1 3 18 18 C 1.34785 * 125.64834 * 61.44824 * 17 2 1 19 19 O 1.21274 * 119.99583 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99805 * 180.02562 * 18 17 2 21 21 S 1.81001 * 109.46620 * 180.02562 * 20 18 17 22 22 C 1.76205 * 99.99519 * 179.97438 * 21 20 18 23 23 H 1.07991 * 120.00563 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99790 * 179.97438 * 22 21 20 25 25 N 1.31627 * 120.00247 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99893 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 90.00333 * 26 24 22 28 28 H 1.48503 * 109.47399 * 209.99822 * 26 24 22 29 29 H 1.48498 * 109.47295 * 330.00429 * 26 24 22 30 30 H 1.09000 * 109.47519 * 179.56642 * 1 2 3 31 31 H 1.09008 * 109.46978 * 299.56594 * 1 2 3 32 32 H 1.09002 * 109.47458 * 59.55883 * 1 2 3 33 33 H 1.09002 * 110.71741 * 260.04597 * 4 2 1 34 34 H 1.09005 * 110.71256 * 23.13980 * 4 2 1 35 35 H 0.97003 * 120.00715 * 334.99427 * 7 5 4 36 36 H 1.08004 * 126.45650 * 0.02562 * 11 10 8 37 37 H 1.08006 * 126.07116 * 180.15531 * 12 11 10 38 38 H 1.08005 * 125.56251 * 179.72426 * 13 12 11 39 39 H 1.08997 * 110.50158 * 278.45093 * 16 5 4 40 40 H 1.09005 * 110.34100 * 156.05643 * 16 5 4 41 41 H 1.08997 * 109.47388 * 60.00287 * 20 18 17 42 42 H 1.09002 * 109.47074 * 300.00315 * 20 18 17 43 43 H 0.96995 * 120.00442 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7490 1.2417 5 6 3.2918 -1.5109 0.6893 6 1 3.4920 -2.4075 1.2759 7 7 4.4698 -0.6411 0.6460 8 6 5.7055 -1.1773 0.6927 9 8 5.8425 -2.3840 0.7714 10 6 6.8850 -0.3066 0.6488 11 6 8.2012 -0.7146 0.6942 12 6 8.9910 0.4371 0.6223 13 6 8.1618 1.5054 0.5456 14 7 6.8794 1.0671 0.5608 15 1 6.0892 1.6279 0.5166 16 6 2.8129 -1.8795 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8048 -0.3603 -2.4663 19 8 1.1386 0.6215 -2.7172 20 6 2.3811 -1.1866 -3.5871 21 16 1.9065 -0.4619 -5.1764 22 6 2.6915 -1.5938 -6.2752 23 1 3.2542 -2.4270 -5.8810 24 6 2.5858 -1.4151 -7.6477 25 7 3.1718 -2.2608 -8.4686 26 14 1.6108 0.0249 -8.3297 27 1 2.5087 1.1959 -8.4967 28 1 1.0331 -0.3475 -9.6461 29 1 0.5156 0.3713 -7.3885 30 1 -0.3634 -1.0276 -0.0078 31 1 -0.3633 0.5071 0.8939 32 1 -0.3634 0.5207 -0.8860 33 1 2.3557 -0.0451 2.0190 34 1 1.3091 -1.4449 1.6197 35 1 4.3607 0.3207 0.5836 36 1 8.5555 -1.7321 0.7682 37 1 10.0705 0.4695 0.6311 38 1 8.4719 2.5381 0.4828 39 1 2.1851 -2.7701 -0.7137 40 1 3.6681 -2.0360 -1.3970 41 1 1.9972 -2.2047 -3.5225 42 1 3.4679 -1.2023 -3.5053 43 1 3.0983 -2.1357 -9.4276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511221405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:46 Heat of formation + Delta-G solvation = -21.959140 kcal Electronic energy + Delta-G solvation = -26531.056438 eV Core-core repulsion = 22703.258783 eV Total energy + Delta-G solvation = -3827.797656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57701 -40.48971 -39.08454 -37.43233 -34.42536 -32.45206 -32.32090 -31.46749 -30.66768 -29.11614 -28.83220 -26.13591 -25.62203 -23.82216 -22.54188 -21.35034 -20.66643 -20.37362 -19.37194 -19.07598 -17.68787 -17.19171 -16.61782 -16.04178 -15.60605 -15.44870 -15.05135 -14.79580 -14.50863 -14.32309 -14.13315 -13.96170 -13.82127 -13.59561 -13.13529 -12.99734 -12.88997 -12.75939 -12.61870 -12.57685 -12.26692 -12.05682 -11.76988 -11.52868 -11.27502 -11.03640 -11.00668 -10.62192 -10.40667 -9.87260 -9.70516 -9.45501 -9.30658 -9.01471 -8.66267 -8.52415 -8.51831 -6.93979 -6.29313 -4.01669 1.17563 2.46800 2.63157 2.67778 2.79697 2.89055 3.13046 3.14946 3.31336 3.48435 3.57082 4.02344 4.18098 4.31802 4.53525 4.56317 4.67564 4.75293 4.83399 5.05255 5.06944 5.09279 5.09726 5.15897 5.22708 5.29235 5.39567 5.45778 5.53101 5.54860 5.74591 5.78133 5.86382 5.88638 5.99991 6.06364 6.13078 6.37068 6.39383 6.61180 6.98151 7.15104 7.49913 7.84108 7.93726 8.38233 8.42076 9.16457 10.80009 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.003285 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.373221 B = 8520.620225 C =10186.004445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.072 0.928 4 C -0.135 4.135 5 C 0.134 3.866 6 H 0.117 0.883 7 N -0.721 5.721 8 C 0.593 3.407 9 O -0.525 6.525 10 C -0.060 4.060 11 C -0.103 4.103 12 C -0.213 4.213 13 C 0.026 3.974 14 N -0.540 5.540 15 H 0.415 0.585 16 C 0.087 3.913 17 N -0.620 5.620 18 C 0.549 3.451 19 O -0.516 6.516 20 C -0.119 4.119 21 S -0.142 6.142 22 C -0.521 4.521 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.879 5.879 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.236 1.236 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.395 0.605 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.172 0.828 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 6.427 25.413 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.090 0.910 4 C -0.173 4.173 5 C 0.028 3.972 6 H 0.135 0.865 7 N -0.372 5.372 8 C 0.381 3.619 9 O -0.400 6.400 10 C -0.173 4.173 11 C -0.129 4.129 12 C -0.237 4.237 13 C -0.110 4.110 14 N -0.136 5.136 15 H 0.252 0.748 16 C -0.037 4.037 17 N -0.358 5.358 18 C 0.338 3.662 19 O -0.390 6.390 20 C -0.269 4.269 21 S 0.085 5.915 22 C -0.669 4.669 23 H 0.106 0.894 24 C -0.112 4.112 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.160 1.160 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.229 0.771 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.189 0.811 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.403 7.010 24.805 26.000 hybrid contribution 0.161 0.105 -0.429 0.470 sum 3.564 7.114 24.376 25.642 Atomic orbital electron populations 1.22139 0.94403 1.02538 1.03050 1.21504 0.95149 0.96071 0.84234 0.90994 1.23097 0.96827 1.00338 0.97036 1.22116 0.84129 0.94747 0.96207 0.86524 1.45760 1.05294 1.10169 1.75978 1.17072 0.81532 0.87310 0.75956 1.90864 1.85788 1.13595 1.49795 1.20376 0.95489 0.82368 1.19045 1.21368 0.90144 0.99594 1.01821 1.20940 0.99694 0.91723 1.11349 1.22081 0.82676 1.00048 1.06230 1.42032 1.08457 1.06388 1.56757 0.74753 1.22839 0.96065 0.89276 0.95523 1.48579 1.53788 1.28671 1.04772 1.19964 0.79765 0.84965 0.81509 1.90687 1.38573 1.27071 1.82657 1.23270 1.03970 1.02539 0.97131 1.84726 1.70709 1.40532 0.95583 1.22308 1.37781 1.13986 0.92819 0.89386 1.24707 0.94547 0.96197 0.95781 1.69936 1.42179 1.35959 1.03513 0.86743 0.82242 0.82770 0.80128 1.19239 1.19892 1.15951 0.92331 0.91948 0.90751 0.89433 0.88479 0.77112 0.83387 0.83793 0.81122 0.89907 0.89704 0.88552 0.88792 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.11 37.16 0.34 -1.32 16 2 C 0.13 1.30 3.45 -66.95 -0.23 1.07 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.13 -0.85 6.08 -24.89 -0.15 -1.00 16 5 C 0.13 1.11 3.43 -65.67 -0.23 0.88 16 6 H 0.12 0.98 7.54 -51.93 -0.39 0.58 16 7 N -0.72 -6.13 5.20 -52.92 -0.27 -6.40 16 8 C 0.59 6.71 7.79 -12.85 -0.10 6.61 16 9 O -0.52 -7.70 16.52 5.19 0.09 -7.62 16 10 C -0.06 -0.62 7.06 -81.98 -0.58 -1.20 16 11 C -0.10 -1.08 10.65 -39.12 -0.42 -1.50 16 12 C -0.21 -1.81 10.81 -39.98 -0.43 -2.24 16 13 C 0.03 0.18 11.89 -16.91 -0.20 -0.02 16 14 N -0.54 -3.94 5.99 -9.39 -0.06 -3.99 16 15 H 0.42 1.89 8.19 -40.82 -0.33 1.56 16 16 C 0.09 0.94 6.41 -2.41 -0.02 0.92 16 17 N -0.62 -7.95 3.07 -162.87 -0.50 -8.44 16 18 C 0.55 9.78 7.66 -10.98 -0.08 9.69 16 19 O -0.52 -10.80 14.89 5.56 0.08 -10.71 16 20 C -0.12 -2.37 5.16 36.01 0.19 -2.18 16 21 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 22 C -0.52 -15.21 10.04 30.94 0.31 -14.89 16 23 H 0.09 2.70 8.03 -52.49 -0.42 2.27 16 24 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 25 N -0.88 -26.77 13.97 55.49 0.78 -26.00 16 26 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.07 1.01 6.87 -51.93 -0.36 0.66 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.51 7.85 -51.93 -0.41 0.11 16 35 H 0.40 2.59 7.80 -40.82 -0.32 2.27 16 36 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.17 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.06 7.48 -51.93 -0.39 0.68 16 41 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 42 H 0.09 1.82 7.85 -51.91 -0.41 1.41 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -37.08 374.84 -8.63 -45.71 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.99 Total: 2.71 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.70 Total: -2.43 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.06 Total: -44.84 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.17 Total: -18.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.08 -8.63 -45.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511221405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.753 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds