Wall clock time and date at job start Tue Mar 31 2020 20:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87907 * 2 1 4 4 C 1.54327 * 110.01289 * 121.09892 * 2 1 3 5 5 C 1.55159 * 102.94355 * 141.67795 * 4 2 1 6 6 H 1.09000 * 111.00137 * 206.42388 * 5 4 2 7 7 N 1.46495 * 111.00021 * 82.61190 * 5 4 2 8 8 C 1.34780 * 120.00013 * 155.00154 * 7 5 4 9 9 O 1.21699 * 119.99454 * 359.97438 * 8 7 5 10 10 C 1.46676 * 120.00115 * 179.97438 * 8 7 5 11 11 C 1.37875 * 126.23063 * 179.68605 * 10 8 7 12 12 C 1.39830 * 107.08448 * 179.84701 * 11 10 8 13 13 C 1.35454 * 107.86364 * 0.42364 * 12 11 10 14 14 N 1.35528 * 108.87535 * 359.73527 * 13 12 11 15 15 H 0.97001 * 125.68374 * 180.02562 * 14 13 12 16 16 C 1.55126 * 101.48551 * 324.33290 * 5 4 2 17 17 N 1.47022 * 109.88226 * 238.98328 * 2 1 3 18 18 C 1.34785 * 125.64834 * 61.44824 * 17 2 1 19 19 O 1.21274 * 119.99583 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99805 * 180.02562 * 18 17 2 21 21 S 1.81001 * 109.46620 * 180.02562 * 20 18 17 22 22 C 1.76205 * 99.99519 * 179.97438 * 21 20 18 23 23 H 1.07991 * 120.00563 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99790 * 179.97438 * 22 21 20 25 25 N 1.31627 * 120.00247 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99893 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 90.00333 * 26 24 22 28 28 H 1.48503 * 109.47399 * 209.99822 * 26 24 22 29 29 H 1.48498 * 109.47295 * 330.00429 * 26 24 22 30 30 H 1.09000 * 109.47519 * 179.56642 * 1 2 3 31 31 H 1.09008 * 109.46978 * 299.56594 * 1 2 3 32 32 H 1.09002 * 109.47458 * 59.55883 * 1 2 3 33 33 H 1.09002 * 110.71741 * 260.04597 * 4 2 1 34 34 H 1.09005 * 110.71256 * 23.13980 * 4 2 1 35 35 H 0.97003 * 120.00715 * 334.99427 * 7 5 4 36 36 H 1.08004 * 126.45650 * 0.02562 * 11 10 8 37 37 H 1.08006 * 126.07116 * 180.15531 * 12 11 10 38 38 H 1.08005 * 125.56251 * 179.72426 * 13 12 11 39 39 H 1.08997 * 110.50158 * 278.45093 * 16 5 4 40 40 H 1.09005 * 110.34100 * 156.05643 * 16 5 4 41 41 H 1.08997 * 109.47388 * 60.00287 * 20 18 17 42 42 H 1.09002 * 109.47074 * 300.00315 * 20 18 17 43 43 H 0.96995 * 120.00442 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7490 1.2417 5 6 3.2918 -1.5109 0.6893 6 1 3.4920 -2.4075 1.2759 7 7 4.4698 -0.6411 0.6460 8 6 5.7055 -1.1773 0.6927 9 8 5.8425 -2.3840 0.7714 10 6 6.8850 -0.3066 0.6488 11 6 8.2012 -0.7146 0.6942 12 6 8.9910 0.4371 0.6223 13 6 8.1618 1.5054 0.5456 14 7 6.8794 1.0671 0.5608 15 1 6.0892 1.6279 0.5166 16 6 2.8129 -1.8795 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8048 -0.3603 -2.4663 19 8 1.1386 0.6215 -2.7172 20 6 2.3811 -1.1866 -3.5871 21 16 1.9065 -0.4619 -5.1764 22 6 2.6915 -1.5938 -6.2752 23 1 3.2542 -2.4270 -5.8810 24 6 2.5858 -1.4151 -7.6477 25 7 3.1718 -2.2608 -8.4686 26 14 1.6108 0.0249 -8.3297 27 1 2.5087 1.1959 -8.4967 28 1 1.0331 -0.3475 -9.6461 29 1 0.5156 0.3713 -7.3885 30 1 -0.3634 -1.0276 -0.0078 31 1 -0.3633 0.5071 0.8939 32 1 -0.3634 0.5207 -0.8860 33 1 2.3557 -0.0451 2.0190 34 1 1.3091 -1.4449 1.6197 35 1 4.3607 0.3207 0.5836 36 1 8.5555 -1.7321 0.7682 37 1 10.0705 0.4695 0.6311 38 1 8.4719 2.5381 0.4828 39 1 2.1851 -2.7701 -0.7137 40 1 3.6681 -2.0360 -1.3970 41 1 1.9972 -2.2047 -3.5225 42 1 3.4679 -1.2023 -3.5053 43 1 3.0983 -2.1357 -9.4276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001511221405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:46 Heat of formation + Delta-G solvation = -49.074003 kcal Electronic energy + Delta-G solvation = -26532.232227 eV Core-core repulsion = 22703.258783 eV Total energy + Delta-G solvation = -3828.973445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27176 -41.46401 -40.09705 -38.56213 -35.32915 -34.71880 -33.40301 -32.15057 -31.46216 -30.37284 -29.72567 -27.90420 -26.95041 -24.64635 -23.50837 -22.07934 -21.38549 -21.07801 -20.45520 -20.03609 -19.53544 -18.28852 -17.75148 -17.15999 -16.83287 -16.72429 -16.35947 -16.19194 -15.73118 -15.32487 -15.11517 -14.95289 -14.88112 -14.61028 -14.54325 -14.17257 -13.92410 -13.68312 -13.55438 -13.38022 -13.28710 -13.21288 -13.11293 -13.02387 -12.65949 -12.48552 -12.30857 -11.89992 -11.79490 -11.30537 -11.21005 -11.00861 -10.61794 -10.44734 -9.96919 -9.73065 -9.19923 -9.05770 -8.55297 -6.27742 0.42567 0.91316 1.28376 1.41282 1.46796 1.50113 1.81791 1.95247 1.98860 2.21588 2.22416 2.32487 2.61746 2.82610 3.27540 3.40107 3.71032 3.85926 3.90461 4.05996 4.12530 4.27757 4.31598 4.33816 4.37415 4.41031 4.50697 4.56385 4.65867 4.75699 4.82448 4.90187 5.05833 5.10750 5.25009 5.26638 5.36644 5.44965 5.66232 5.72154 5.91602 6.06672 6.27067 6.35091 6.57055 6.88806 7.02572 7.04110 8.57602 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.003285 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.373221 B = 8520.620225 C =10186.004445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.077 0.923 4 C -0.113 4.113 5 C 0.138 3.862 6 H 0.122 0.878 7 N -0.708 5.708 8 C 0.591 3.409 9 O -0.568 6.568 10 C -0.085 4.085 11 C -0.128 4.128 12 C -0.232 4.232 13 C 0.044 3.956 14 N -0.529 5.529 15 H 0.429 0.571 16 C 0.080 3.920 17 N -0.607 5.607 18 C 0.552 3.448 19 O -0.552 6.552 20 C -0.107 4.107 21 S -0.163 6.163 22 C -0.535 4.535 23 H 0.056 0.944 24 C 0.046 3.954 25 N -0.917 5.917 26 Si 0.917 3.083 27 H -0.260 1.260 28 H -0.257 1.257 29 H -0.235 1.235 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.035 0.965 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.407 0.593 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.211 0.789 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 8.548 27.706 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.095 0.905 4 C -0.151 4.151 5 C 0.032 3.968 6 H 0.140 0.860 7 N -0.359 5.359 8 C 0.381 3.619 9 O -0.447 6.447 10 C -0.198 4.198 11 C -0.155 4.155 12 C -0.255 4.255 13 C -0.094 4.094 14 N -0.126 5.126 15 H 0.269 0.731 16 C -0.044 4.044 17 N -0.342 5.342 18 C 0.339 3.661 19 O -0.430 6.430 20 C -0.258 4.258 21 S 0.064 5.936 22 C -0.682 4.682 23 H 0.074 0.926 24 C -0.159 4.159 25 N -0.555 5.555 26 Si 0.738 3.262 27 H -0.185 1.185 28 H -0.181 1.181 29 H -0.159 1.159 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.243 0.757 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.228 0.772 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.723 9.142 27.145 28.772 hybrid contribution 0.467 -0.612 -1.009 1.269 sum 3.189 8.530 26.136 27.677 Atomic orbital electron populations 1.22099 0.94418 1.02521 1.02684 1.21846 0.95177 0.96576 0.83970 0.90542 1.23089 0.95673 1.00634 0.95688 1.22140 0.84681 0.95492 0.94452 0.85985 1.45671 1.04612 1.10835 1.74800 1.17260 0.82475 0.86876 0.75316 1.90833 1.86464 1.15375 1.52064 1.20254 0.94982 0.83696 1.20833 1.21543 0.91177 1.00022 1.02767 1.21230 1.00751 0.91474 1.12051 1.22719 0.81975 1.01365 1.03295 1.42028 1.09418 1.05351 1.55772 0.73108 1.23060 0.95455 0.89142 0.96764 1.48469 1.52641 1.29072 1.04020 1.19429 0.79711 0.84296 0.82635 1.90674 1.40392 1.28443 1.83458 1.23228 1.04356 1.03006 0.95163 1.84532 1.70604 1.40285 0.98218 1.22450 1.37758 1.13935 0.94063 0.92590 1.25603 0.95448 0.98803 0.96052 1.70019 1.43479 1.37740 1.04214 0.85837 0.80889 0.79505 0.79937 1.18482 1.18084 1.15926 0.92118 0.88887 0.94556 0.86415 0.86365 0.75746 0.84633 0.82330 0.77241 0.88356 0.91849 0.87859 0.88474 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.11 71.98 0.66 -2.19 16 2 C 0.13 2.09 3.45 45.34 0.16 2.25 16 3 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -0.95 6.08 31.78 0.19 -0.75 16 5 C 0.14 1.94 3.43 46.46 0.16 2.10 16 6 H 0.12 1.75 7.54 -2.39 -0.02 1.74 16 7 N -0.71 -10.73 5.20 -439.55 -2.28 -13.01 16 8 C 0.59 13.17 7.79 86.45 0.67 13.84 16 9 O -0.57 -17.06 16.52 -4.34 -0.07 -17.13 16 10 C -0.08 -1.70 7.06 40.35 0.28 -1.42 16 11 C -0.13 -2.75 10.65 22.57 0.24 -2.51 16 12 C -0.23 -3.66 10.81 22.01 0.24 -3.43 16 13 C 0.04 0.49 11.89 83.48 0.99 1.48 16 14 N -0.53 -6.58 5.99 -183.62 -1.10 -7.68 16 15 H 0.43 2.71 8.19 -92.71 -0.76 1.95 16 16 C 0.08 1.60 6.41 86.93 0.56 2.16 16 17 N -0.61 -14.66 3.07 -787.60 -2.41 -17.07 16 18 C 0.55 19.44 7.66 87.66 0.67 20.11 16 19 O -0.55 -23.06 14.89 -3.01 -0.04 -23.10 16 20 C -0.11 -4.31 5.16 71.24 0.37 -3.94 16 21 S -0.16 -8.42 18.55 -56.49 -1.05 -9.46 16 22 C -0.53 -32.05 10.04 67.96 0.68 -31.36 16 23 H 0.06 3.59 8.03 -2.91 -0.02 3.57 16 24 C 0.05 2.77 5.50 84.86 0.47 3.24 16 25 N -0.92 -56.81 13.97 21.65 0.30 -56.51 16 26 Si 0.92 45.31 27.74 68.60 1.90 47.21 16 27 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 28 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 29 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.04 0.95 6.87 -2.39 -0.02 0.93 16 33 H 0.12 0.42 8.14 -2.39 -0.02 0.41 16 34 H 0.12 0.64 7.85 -2.38 -0.02 0.62 16 35 H 0.41 4.24 7.80 -92.71 -0.72 3.52 16 36 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.59 7.48 -2.38 -0.02 1.57 16 41 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 42 H 0.10 3.84 7.85 -2.39 -0.02 3.82 16 43 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -84.34 374.84 1.11 -83.23 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.47 Total: 13.95 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 6.34 Total: -0.41 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -5.50 Total: -94.28 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.12 Total: -40.23 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.05 Total: -9.46 kcal Total: -84.34 1.11 -83.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511221405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.158 kcal (2) G-P(sol) polarization free energy of solvation -84.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds