Wall clock time and date at job start Tue Mar 31 2020 20:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.88697 * 2 1 4 4 C 1.55122 * 110.91105 * 124.10319 * 2 1 3 5 5 N 1.47424 * 104.72637 * 155.27555 * 4 2 1 6 6 C 1.34770 * 125.65091 * 155.81484 * 5 4 2 7 7 O 1.21624 * 120.00206 * 4.56298 * 6 5 4 8 8 C 1.47171 * 120.00147 * 184.55367 * 6 5 4 9 9 C 1.36617 * 125.16150 * 174.50415 * 8 6 5 10 10 C 1.36801 * 114.74589 * 180.28908 * 9 8 6 11 11 C 1.36624 * 114.73984 * 359.54645 * 10 9 8 12 12 C 1.47172 * 125.15629 * 180.16217 * 11 10 9 13 13 N 1.34782 * 119.99529 * 180.28909 * 12 11 10 14 14 O 1.21621 * 120.00305 * 0.28578 * 12 11 10 15 15 S 1.75831 * 109.68014 * 0.43075 * 11 10 9 16 16 C 1.47028 * 108.69969 * 335.55237 * 5 4 2 17 17 C 1.54319 * 107.27192 * 1.28589 * 16 5 4 18 18 H 1.09000 * 110.72203 * 263.65274 * 17 16 5 19 19 C 1.53000 * 110.72015 * 140.55608 * 17 16 5 20 20 N 1.46494 * 109.47047 * 66.45338 * 19 17 16 21 21 C 1.36944 * 120.00216 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99641 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00330 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99665 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46813 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47166 * 120.00021 * 25 23 21 28 28 H 1.48500 * 109.47225 * 240.00513 * 25 23 21 29 29 H 1.09009 * 109.46733 * 183.87504 * 1 2 3 30 30 H 1.09000 * 109.47353 * 303.87102 * 1 2 3 31 31 H 1.08993 * 109.47641 * 63.87606 * 1 2 3 32 32 H 1.09005 * 110.49945 * 36.43153 * 4 2 1 33 33 H 1.09007 * 110.34395 * 274.03981 * 4 2 1 34 34 H 1.07995 * 122.62562 * 0.02562 * 9 8 6 35 35 H 1.07999 * 122.63010 * 179.73481 * 10 9 8 36 36 H 0.96994 * 120.00149 * 359.97438 * 13 12 11 37 37 H 0.97004 * 119.99423 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.87735 * 120.70607 * 16 5 4 39 39 H 1.08997 * 109.88251 * 241.71103 * 16 5 4 40 40 H 1.08996 * 109.47138 * 186.45712 * 19 17 16 41 41 H 1.09006 * 109.47244 * 306.45116 * 19 17 16 42 42 H 0.96996 * 120.00332 * 359.97438 * 20 19 17 43 43 H 0.97007 * 119.99251 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8125 1.1999 5 7 3.4272 -1.2434 0.7726 6 6 4.4477 -1.5622 1.5931 7 8 4.2755 -1.5864 2.7968 8 6 5.7705 -1.8813 1.0324 9 6 6.9003 -2.1132 1.7648 10 6 8.0174 -2.3852 1.0235 11 6 7.8194 -2.3903 -0.3283 12 6 8.8581 -2.6581 -1.3359 13 7 8.5478 -2.6307 -2.6472 14 8 9.9964 -2.9042 -0.9854 15 16 6.1371 -2.0207 -0.6817 16 6 3.4674 -1.2737 -0.6968 17 6 2.0861 -0.8073 -1.2027 18 1 1.4478 -1.6625 -1.4248 19 6 2.2348 0.0888 -2.4339 20 7 2.7613 -0.6994 -3.5508 21 6 2.9795 -0.1054 -4.7653 22 1 2.7638 0.9443 -4.8995 23 6 3.4789 -0.8521 -5.8235 24 7 3.7422 -2.1313 -5.6597 25 14 3.7758 -0.0419 -7.4803 26 1 3.4019 1.3932 -7.4035 27 1 5.2119 -0.1603 -7.8389 28 1 2.9500 -0.7144 -8.5152 29 1 -0.3633 -1.0254 0.0695 30 1 -0.3634 0.5727 0.8532 31 1 -0.3634 0.4524 -0.9226 32 1 1.4525 -1.6789 1.3979 33 1 2.1516 -0.1812 2.0859 34 1 6.9115 -2.0800 2.8441 35 1 8.9797 -2.5836 1.4718 36 1 7.6399 -2.4348 -2.9268 37 1 9.2325 -2.8069 -3.3114 38 1 4.2425 -0.5991 -1.0603 39 1 3.6678 -2.2882 -1.0413 40 1 1.2617 0.4982 -2.7049 41 1 2.9222 0.9043 -2.2088 42 1 2.9561 -1.6419 -3.4300 43 1 4.0909 -2.6531 -6.3994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569849689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:47 Heat of formation + Delta-G solvation = -30.681329 kcal Electronic energy + Delta-G solvation = -26859.186849 eV Core-core repulsion = 23031.010971 eV Total energy + Delta-G solvation = -3828.175878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30123 -39.59179 -38.27402 -36.89485 -34.76680 -33.81073 -33.22436 -31.60425 -30.12811 -29.20573 -27.14413 -25.73341 -25.13028 -23.30596 -21.91214 -21.49711 -20.61677 -20.22253 -19.10568 -18.19559 -17.26225 -17.12252 -16.78560 -16.29923 -15.66816 -15.49342 -15.01166 -14.86542 -14.65792 -14.24317 -14.18069 -13.78106 -13.42263 -13.32538 -13.13177 -12.94758 -12.71182 -12.57149 -12.36703 -12.32108 -11.99264 -11.50039 -11.31613 -11.18222 -10.95701 -10.70585 -10.57645 -10.54911 -10.31430 -10.13703 -10.06570 -9.84915 -9.79687 -9.09450 -9.01845 -8.85941 -8.58219 -7.07606 -5.90482 -3.19653 -0.01905 1.23061 1.61126 1.93782 2.76812 2.93893 3.13192 3.33667 3.33936 3.41245 3.42200 4.20759 4.42086 4.55287 4.63417 4.77485 4.78699 5.04707 5.17575 5.20672 5.26516 5.38662 5.44815 5.46791 5.61068 5.70994 5.71509 5.76503 5.84591 5.86371 5.92406 6.06397 6.09694 6.12598 6.17329 6.26980 6.55959 6.62592 6.66303 7.15333 7.30823 7.59041 7.93697 8.05026 8.27838 9.40147 9.94431 10.29600 11.31915 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.007494 B = 0.005134 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.314291 B = 5452.917293 C = 8964.903155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.089 0.911 4 C 0.114 3.886 5 N -0.613 5.613 6 C 0.602 3.398 7 O -0.532 6.532 8 C -0.235 4.235 9 C -0.075 4.075 10 C -0.072 4.072 11 C -0.262 4.262 12 C 0.596 3.404 13 N -0.844 5.844 14 O -0.536 6.536 15 S 0.248 5.752 16 C 0.090 3.910 17 C -0.094 4.094 18 H 0.091 0.909 19 C 0.162 3.838 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.407 0.593 37 H 0.410 0.590 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 0.821 11.989 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.008 4.008 5 N -0.345 5.345 6 C 0.391 3.609 7 O -0.411 6.411 8 C -0.357 4.357 9 C -0.109 4.109 10 C -0.105 4.105 11 C -0.384 4.384 12 C 0.380 3.620 13 N -0.408 5.408 14 O -0.415 6.415 15 S 0.519 5.481 16 C -0.033 4.033 17 C -0.113 4.113 18 H 0.109 0.891 19 C 0.034 3.966 20 N -0.377 5.377 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.206 4.206 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.237 0.763 37 H 0.242 0.758 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.217 0.783 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.243 0.926 11.546 11.585 hybrid contribution 0.958 -0.101 -0.273 1.001 sum 1.201 0.825 11.273 11.366 Atomic orbital electron populations 1.21686 0.93374 1.02247 1.02371 1.22445 0.96525 0.99497 0.93431 0.89309 1.22410 0.81961 0.98499 0.97932 1.48380 1.12305 1.66360 1.07492 1.16644 0.81759 0.77141 0.85403 1.90804 1.83084 1.53488 1.13713 1.24905 0.98538 1.14393 0.97886 1.20482 0.89823 0.98638 1.01915 1.20493 1.00282 0.98747 0.91003 1.25286 1.00296 1.14374 0.98395 1.17064 0.86613 0.76151 0.82177 1.43750 1.16155 1.73995 1.06894 1.90835 1.20562 1.49224 1.80864 1.85113 0.98889 1.61863 1.02227 1.22366 1.00108 1.02512 0.78347 1.22486 0.93870 0.99602 0.95385 0.89097 1.20678 0.97092 0.92870 0.85939 1.42353 1.77911 1.09841 1.07595 1.19251 1.35743 0.94178 0.87867 0.91102 1.24694 1.02038 0.95778 0.98116 1.69658 1.50940 1.05964 1.31511 0.86171 0.77492 0.78439 0.84393 1.20569 1.21862 1.21852 0.92304 0.92460 0.91473 0.90954 0.90250 0.82551 0.82740 0.76336 0.75821 0.89764 0.90417 0.95396 0.95926 0.78315 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.31 37.16 0.35 -0.93 16 2 C -0.10 -1.08 3.10 -88.35 -0.27 -1.35 16 3 H 0.09 0.96 8.05 -51.93 -0.42 0.55 16 4 C 0.11 1.31 6.36 -2.41 -0.02 1.30 16 5 N -0.61 -8.26 3.32 -171.74 -0.57 -8.83 16 6 C 0.60 8.99 7.82 -12.64 -0.10 8.89 16 7 O -0.53 -9.14 17.12 5.26 0.09 -9.05 16 8 C -0.24 -3.19 6.39 -36.54 -0.23 -3.42 16 9 C -0.08 -0.92 9.89 -40.69 -0.40 -1.32 16 10 C -0.07 -0.88 9.88 -40.68 -0.40 -1.28 16 11 C -0.26 -3.45 6.46 -36.54 -0.24 -3.68 16 12 C 0.60 8.35 8.08 -12.63 -0.10 8.25 16 13 N -0.84 -9.78 8.87 30.37 0.27 -9.51 16 14 O -0.54 -9.02 17.65 5.26 0.09 -8.93 16 15 S 0.25 3.18 17.69 -107.50 -1.90 1.28 16 16 C 0.09 1.23 4.46 -3.06 -0.01 1.22 16 17 C -0.09 -1.26 2.48 -88.78 -0.22 -1.48 16 18 H 0.09 1.24 8.04 -51.93 -0.42 0.82 16 19 C 0.16 2.74 5.58 -4.04 -0.02 2.72 16 20 N -0.73 -16.01 5.45 -59.91 -0.33 -16.34 16 21 C -0.24 -6.02 9.99 -15.06 -0.15 -6.17 16 22 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -25.33 13.06 55.49 0.72 -24.61 16 25 Si 0.90 20.78 29.55 -169.99 -5.02 15.75 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.06 0.52 8.07 -51.92 -0.42 0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.79 7.99 -51.93 -0.41 0.37 16 33 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.16 1.71 8.04 -52.49 -0.42 1.29 16 35 H 0.16 1.68 8.04 -52.49 -0.42 1.26 16 36 H 0.41 4.58 7.93 -40.82 -0.32 4.26 16 37 H 0.41 4.05 8.93 -40.82 -0.36 3.68 16 38 H 0.08 1.22 6.28 -51.89 -0.33 0.90 16 39 H 0.08 1.08 7.14 -51.93 -0.37 0.71 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.39 8.06 -51.93 -0.42 -0.02 16 42 H 0.38 8.73 7.52 -40.82 -0.31 8.43 16 43 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -31.20 372.08 -8.82 -40.02 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.86 Total: 12.22 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.92 Total: 2.37 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.10 Total: -59.28 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.18 Total: -17.98 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.90 Total: 1.28 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.20 -8.82 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569849689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.337 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds