Wall clock time and date at job start Tue Mar 31 2020 20:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.88697 * 2 1 4 4 C 1.55122 * 110.91105 * 124.10319 * 2 1 3 5 5 N 1.47424 * 104.72637 * 155.27555 * 4 2 1 6 6 C 1.34770 * 125.65091 * 155.81484 * 5 4 2 7 7 O 1.21624 * 120.00206 * 4.56298 * 6 5 4 8 8 C 1.47171 * 120.00147 * 184.55367 * 6 5 4 9 9 C 1.36617 * 125.16150 * 174.50415 * 8 6 5 10 10 C 1.36801 * 114.74589 * 180.28908 * 9 8 6 11 11 C 1.36624 * 114.73984 * 359.54645 * 10 9 8 12 12 C 1.47172 * 125.15629 * 180.16217 * 11 10 9 13 13 N 1.34782 * 119.99529 * 180.28909 * 12 11 10 14 14 O 1.21621 * 120.00305 * 0.28578 * 12 11 10 15 15 S 1.75831 * 109.68014 * 0.43075 * 11 10 9 16 16 C 1.47028 * 108.69969 * 335.55237 * 5 4 2 17 17 C 1.54319 * 107.27192 * 1.28589 * 16 5 4 18 18 H 1.09000 * 110.72203 * 263.65274 * 17 16 5 19 19 C 1.53000 * 110.72015 * 140.55608 * 17 16 5 20 20 N 1.46494 * 109.47047 * 66.45338 * 19 17 16 21 21 C 1.36944 * 120.00216 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99641 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00330 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99665 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46813 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47166 * 120.00021 * 25 23 21 28 28 H 1.48500 * 109.47225 * 240.00513 * 25 23 21 29 29 H 1.09009 * 109.46733 * 183.87504 * 1 2 3 30 30 H 1.09000 * 109.47353 * 303.87102 * 1 2 3 31 31 H 1.08993 * 109.47641 * 63.87606 * 1 2 3 32 32 H 1.09005 * 110.49945 * 36.43153 * 4 2 1 33 33 H 1.09007 * 110.34395 * 274.03981 * 4 2 1 34 34 H 1.07995 * 122.62562 * 0.02562 * 9 8 6 35 35 H 1.07999 * 122.63010 * 179.73481 * 10 9 8 36 36 H 0.96994 * 120.00149 * 359.97438 * 13 12 11 37 37 H 0.97004 * 119.99423 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.87735 * 120.70607 * 16 5 4 39 39 H 1.08997 * 109.88251 * 241.71103 * 16 5 4 40 40 H 1.08996 * 109.47138 * 186.45712 * 19 17 16 41 41 H 1.09006 * 109.47244 * 306.45116 * 19 17 16 42 42 H 0.96996 * 120.00332 * 359.97438 * 20 19 17 43 43 H 0.97007 * 119.99251 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8125 1.1999 5 7 3.4272 -1.2434 0.7726 6 6 4.4477 -1.5622 1.5931 7 8 4.2755 -1.5864 2.7968 8 6 5.7705 -1.8813 1.0324 9 6 6.9003 -2.1132 1.7648 10 6 8.0174 -2.3852 1.0235 11 6 7.8194 -2.3903 -0.3283 12 6 8.8581 -2.6581 -1.3359 13 7 8.5478 -2.6307 -2.6472 14 8 9.9964 -2.9042 -0.9854 15 16 6.1371 -2.0207 -0.6817 16 6 3.4674 -1.2737 -0.6968 17 6 2.0861 -0.8073 -1.2027 18 1 1.4478 -1.6625 -1.4248 19 6 2.2348 0.0888 -2.4339 20 7 2.7613 -0.6994 -3.5508 21 6 2.9795 -0.1054 -4.7653 22 1 2.7638 0.9443 -4.8995 23 6 3.4789 -0.8521 -5.8235 24 7 3.7422 -2.1313 -5.6597 25 14 3.7758 -0.0419 -7.4803 26 1 3.4019 1.3932 -7.4035 27 1 5.2119 -0.1603 -7.8389 28 1 2.9500 -0.7144 -8.5152 29 1 -0.3633 -1.0254 0.0695 30 1 -0.3634 0.5727 0.8532 31 1 -0.3634 0.4524 -0.9226 32 1 1.4525 -1.6789 1.3979 33 1 2.1516 -0.1812 2.0859 34 1 6.9115 -2.0800 2.8441 35 1 8.9797 -2.5836 1.4718 36 1 7.6399 -2.4348 -2.9268 37 1 9.2325 -2.8069 -3.3114 38 1 4.2425 -0.5991 -1.0603 39 1 3.6678 -2.2882 -1.0413 40 1 1.2617 0.4982 -2.7049 41 1 2.9222 0.9043 -2.2088 42 1 2.9561 -1.6419 -3.4300 43 1 4.0909 -2.6531 -6.3994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569849689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:46 Heat of formation + Delta-G solvation = -52.373271 kcal Electronic energy + Delta-G solvation = -26860.127482 eV Core-core repulsion = 23031.010971 eV Total energy + Delta-G solvation = -3829.116512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40380 -40.70079 -39.39468 -37.96963 -36.37813 -34.89242 -34.38915 -33.16868 -31.17713 -30.59807 -28.11729 -27.11851 -26.21762 -24.89815 -22.97645 -22.66153 -21.73256 -21.27511 -20.16279 -19.32260 -18.98145 -18.18048 -17.94162 -17.38868 -16.71629 -16.61040 -16.56387 -16.08779 -15.84235 -15.41403 -15.36464 -15.18862 -14.95689 -14.46266 -14.23792 -14.08142 -13.79629 -13.60330 -13.41648 -13.32797 -13.22591 -12.91702 -12.76160 -12.51556 -12.26568 -12.07033 -11.87724 -11.81084 -11.60681 -11.48992 -11.30106 -11.28163 -10.92081 -10.87866 -10.17695 -9.88909 -9.62859 -8.91164 -7.87886 -5.14876 -1.07029 0.19493 0.58294 0.89415 1.51290 1.54751 1.61488 1.70394 1.81906 2.05830 2.32724 2.60841 3.15668 3.41257 3.48744 3.61484 3.73929 3.76800 4.05066 4.11036 4.22912 4.24210 4.37664 4.47656 4.51664 4.66111 4.74395 4.76526 4.79449 4.85385 4.87244 5.04139 5.10126 5.14149 5.19258 5.25048 5.35977 5.52138 5.60205 5.66840 6.11576 6.19293 6.34525 6.80527 7.01546 7.43064 8.15810 8.40676 9.34745 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.007494 B = 0.005134 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.314291 B = 5452.917293 C = 8964.903155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.092 0.908 4 C 0.111 3.889 5 N -0.610 5.610 6 C 0.600 3.400 7 O -0.559 6.559 8 C -0.250 4.250 9 C -0.066 4.066 10 C -0.066 4.066 11 C -0.272 4.272 12 C 0.595 3.405 13 N -0.832 5.832 14 O -0.569 6.569 15 S 0.252 5.748 16 C 0.095 3.905 17 C -0.087 4.087 18 H 0.091 0.909 19 C 0.164 3.836 20 N -0.741 5.741 21 C -0.238 4.238 22 H 0.072 0.928 23 C -0.062 4.062 24 N -0.960 5.960 25 Si 0.958 3.042 26 H -0.272 1.272 27 H -0.294 1.294 28 H -0.299 1.299 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.410 0.590 37 H 0.418 0.582 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.024 0.976 42 H 0.377 0.623 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 1.619 12.577 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.110 0.890 4 C -0.010 4.010 5 N -0.342 5.342 6 C 0.389 3.611 7 O -0.440 6.440 8 C -0.372 4.372 9 C -0.099 4.099 10 C -0.100 4.100 11 C -0.393 4.393 12 C 0.380 3.620 13 N -0.395 5.395 14 O -0.450 6.450 15 S 0.523 5.477 16 C -0.029 4.029 17 C -0.106 4.106 18 H 0.110 0.890 19 C 0.037 3.963 20 N -0.384 5.384 21 C -0.370 4.370 22 H 0.090 0.910 23 C -0.255 4.255 24 N -0.610 5.610 25 Si 0.788 3.212 26 H -0.196 1.196 27 H -0.222 1.222 28 H -0.227 1.227 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.240 0.760 37 H 0.252 0.748 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.209 0.791 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.555 1.764 12.113 12.254 hybrid contribution 1.154 -0.308 -0.428 1.269 sum 0.600 1.456 11.685 11.791 Atomic orbital electron populations 1.21679 0.91718 1.02930 1.03011 1.22401 0.97746 0.98991 0.91451 0.89002 1.22579 0.81087 0.99084 0.98279 1.48425 1.12840 1.65684 1.07245 1.16799 0.82284 0.76857 0.85169 1.90784 1.83604 1.54957 1.14664 1.24926 0.98524 1.15442 0.98311 1.20658 0.89274 0.97401 1.02616 1.20673 1.00837 0.97801 0.90647 1.25322 1.00250 1.15001 0.98754 1.17191 0.86288 0.75754 0.82803 1.43685 1.16548 1.72833 1.06484 1.90817 1.21740 1.51015 1.81396 1.85083 0.98697 1.61943 1.01928 1.22271 1.00047 1.02102 0.78510 1.22358 0.93964 0.99409 0.94866 0.89024 1.20773 0.96703 0.93001 0.85826 1.42495 1.77978 1.09902 1.07995 1.19560 1.34146 0.94265 0.89010 0.90962 1.25294 1.03064 0.96344 1.00829 1.69770 1.52409 1.06939 1.31925 0.85312 0.76810 0.77999 0.81045 1.19620 1.22163 1.22675 0.91834 0.90626 0.91846 0.89949 0.89775 0.81142 0.81392 0.75988 0.74836 0.90571 0.90819 0.94982 0.95818 0.79060 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.31 71.98 0.67 -1.44 16 2 C -0.09 -1.68 3.10 -9.33 -0.03 -1.71 16 3 H 0.09 1.77 8.05 -2.39 -0.02 1.75 16 4 C 0.11 2.34 6.36 86.93 0.55 2.89 16 5 N -0.61 -15.70 3.32 -815.52 -2.71 -18.41 16 6 C 0.60 17.35 7.82 86.59 0.68 18.02 16 7 O -0.56 -18.69 17.12 -4.11 -0.07 -18.76 16 8 C -0.25 -6.57 6.39 24.24 0.15 -6.42 16 9 C -0.07 -1.53 9.89 21.55 0.21 -1.32 16 10 C -0.07 -1.54 9.88 21.55 0.21 -1.33 16 11 C -0.27 -6.98 6.46 24.24 0.16 -6.82 16 12 C 0.59 16.43 8.08 86.59 0.70 17.13 16 13 N -0.83 -18.90 8.87 -176.06 -1.56 -20.46 16 14 O -0.57 -18.98 17.65 -4.10 -0.07 -19.05 16 15 S 0.25 6.35 17.69 -56.49 -1.00 5.35 16 16 C 0.09 2.49 4.46 86.73 0.39 2.88 16 17 C -0.09 -2.19 2.48 -9.60 -0.02 -2.21 16 18 H 0.09 2.35 8.04 -2.39 -0.02 2.33 16 19 C 0.16 5.32 5.58 86.38 0.48 5.80 16 20 N -0.74 -31.88 5.45 -343.46 -1.87 -33.75 16 21 C -0.24 -11.78 9.99 84.03 0.84 -10.94 16 22 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 23 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 24 N -0.96 -52.27 13.06 21.65 0.28 -51.98 16 25 Si 0.96 42.44 29.55 68.60 2.03 44.47 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 28 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 29 H 0.06 0.94 8.07 -2.38 -0.02 0.93 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.60 7.99 -2.38 -0.02 1.58 16 33 H 0.08 1.74 8.08 -2.38 -0.02 1.72 16 34 H 0.17 3.46 8.04 -2.91 -0.02 3.43 16 35 H 0.17 3.43 8.04 -2.91 -0.02 3.41 16 36 H 0.41 9.07 7.93 -92.71 -0.74 8.34 16 37 H 0.42 8.05 8.93 -92.71 -0.83 7.22 16 38 H 0.08 2.16 6.28 -2.41 -0.02 2.14 16 39 H 0.07 2.02 7.14 -2.39 -0.02 2.00 16 40 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.02 0.79 8.06 -2.38 -0.02 0.77 16 42 H 0.38 17.11 7.52 -92.71 -0.70 16.41 16 43 H 0.25 13.36 8.31 -92.70 -0.77 12.59 16 Total: -1.00 -65.00 372.08 -0.70 -65.70 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -1.19 Total: 35.12 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.46 Total: 11.78 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.86 Total: -124.61 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.14 Total: -37.81 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -1.00 Total: 5.35 kcal Total: -65.00 -0.70 -65.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569849689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.324 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds