Wall clock time and date at job start Tue Mar 31 2020 20:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.91431 * 2 1 4 4 C 1.55120 * 110.93387 * 124.05950 * 2 1 3 5 5 N 1.47425 * 104.94391 * 81.21888 * 4 2 1 6 6 C 1.34769 * 125.64972 * 203.96993 * 5 4 2 7 7 O 1.21630 * 119.99804 * 355.24080 * 6 5 4 8 8 C 1.47173 * 120.00389 * 175.24400 * 6 5 4 9 9 C 1.36615 * 125.16332 * 185.45925 * 8 6 5 10 10 C 1.36795 * 114.74551 * 179.78623 * 9 8 6 11 11 C 1.36617 * 114.74160 * 0.50552 * 10 9 8 12 12 C 1.47170 * 125.16144 * 179.69267 * 11 10 9 13 13 N 1.34777 * 120.00104 * 180.02562 * 12 11 10 14 14 O 1.21625 * 120.00039 * 0.02562 * 12 11 10 15 15 S 1.75834 * 125.15728 * 5.76190 * 8 6 5 16 16 C 1.47023 * 108.70349 * 23.99889 * 5 4 2 17 17 C 1.54328 * 107.26972 * 358.94224 * 16 5 4 18 18 H 1.08997 * 110.71528 * 96.34844 * 17 16 5 19 19 C 1.52999 * 110.72137 * 219.44101 * 17 16 5 20 20 N 1.46496 * 109.47345 * 291.16513 * 19 17 16 21 21 C 1.36941 * 120.00290 * 180.27641 * 20 19 17 22 22 H 1.07998 * 119.99687 * 359.71883 * 21 20 19 23 23 C 1.38804 * 120.00218 * 179.72145 * 21 20 19 24 24 N 1.31620 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00046 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47083 * 90.00051 * 25 23 21 27 27 H 1.48501 * 109.47198 * 209.99631 * 25 23 21 28 28 H 1.48496 * 109.47097 * 329.99982 * 25 23 21 29 29 H 1.09003 * 109.47229 * 183.89860 * 1 2 3 30 30 H 1.09002 * 109.47304 * 303.89860 * 1 2 3 31 31 H 1.09001 * 109.47366 * 63.89790 * 1 2 3 32 32 H 1.09000 * 110.42146 * 322.28661 * 4 2 1 33 33 H 1.09011 * 110.29703 * 200.08029 * 4 2 1 34 34 H 1.07999 * 122.62582 * 359.97438 * 9 8 6 35 35 H 1.07995 * 122.63265 * 180.22873 * 10 9 8 36 36 H 0.96999 * 120.00229 * 359.97438 * 13 12 11 37 37 H 0.96998 * 119.99773 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.88337 * 239.52619 * 16 5 4 39 39 H 1.08996 * 109.88615 * 118.36204 * 16 5 4 40 40 H 1.08994 * 109.47375 * 171.15653 * 19 17 16 41 41 H 1.09004 * 109.46939 * 51.15726 * 19 17 16 42 42 H 0.97007 * 120.00299 * 359.97438 * 20 19 17 43 43 H 0.97005 * 120.00141 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0842 -0.8114 1.2003 5 7 2.0169 -2.2200 0.7704 6 6 1.9527 -3.2888 1.5889 7 8 2.0340 -3.1383 2.7931 8 6 1.7842 -4.6380 1.0256 9 6 1.6008 -5.7781 1.7556 10 6 1.4629 -6.9181 1.0122 11 6 1.5417 -6.7325 -0.3390 12 6 1.4314 -7.7976 -1.3486 13 7 1.5254 -7.4965 -2.6589 14 8 1.2554 -8.9496 -1.0005 15 16 1.7958 -5.0281 -0.6889 16 6 2.0323 -2.2657 -0.6990 17 6 2.0861 -0.8078 -1.2022 18 1 3.1122 -0.5137 -1.4229 19 6 1.1965 -0.6270 -2.4339 20 7 1.7784 -1.3505 -3.5670 21 6 1.1555 -1.3283 -4.7864 22 1 0.2328 -0.7812 -4.9114 23 6 1.7099 -2.0089 -5.8615 24 7 2.8347 -2.6753 -5.7092 25 14 0.8598 -1.9792 -7.5246 26 1 1.3602 -0.8265 -8.3158 27 1 1.1495 -3.2414 -8.2513 28 1 -0.6062 -1.8461 -7.3288 29 1 -0.3634 -1.0253 0.0699 30 1 -0.3634 0.5732 0.8530 31 1 -0.3634 0.4521 -0.9229 32 1 1.4653 -0.6544 2.0837 33 1 3.1162 -0.5262 1.4052 34 1 1.5645 -5.7788 2.8350 35 1 1.3084 -7.8893 1.4585 36 1 1.6654 -6.5777 -2.9366 37 1 1.4531 -8.1986 -3.3243 38 1 1.1271 -2.7508 -1.0643 39 1 2.9117 -2.8096 -1.0439 40 1 1.1245 0.4328 -2.6777 41 1 0.2016 -1.0201 -2.2243 42 1 2.6074 -1.8417 -3.4549 43 1 3.2224 -3.1507 -6.4607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569849690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:50 Heat of formation + Delta-G solvation = -27.816219 kcal Electronic energy + Delta-G solvation = -27030.402907 eV Core-core repulsion = 23202.351269 eV Total energy + Delta-G solvation = -3828.051638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38358 -39.61004 -38.35321 -36.91287 -34.76934 -33.82719 -33.06413 -31.45531 -30.08610 -29.12197 -27.28953 -25.73611 -25.30198 -23.32812 -22.10281 -21.76525 -20.63310 -19.58011 -19.06749 -18.19213 -17.28371 -17.01827 -16.85595 -16.46337 -15.70661 -15.49515 -15.02847 -14.95361 -14.52105 -14.42376 -14.02291 -13.79775 -13.45054 -13.32176 -13.09147 -12.88986 -12.68536 -12.64776 -12.36094 -12.18962 -11.92361 -11.78889 -11.19735 -11.10391 -10.93806 -10.65622 -10.62250 -10.47941 -10.31152 -10.15251 -10.06145 -9.86698 -9.80197 -9.10052 -9.00282 -8.86235 -8.58116 -7.06660 -5.89625 -3.18820 -0.02983 1.21710 1.59763 1.92861 2.77525 2.93211 3.12308 3.32269 3.34600 3.41220 3.41775 4.20660 4.41878 4.53725 4.64055 4.77141 4.85417 5.03634 5.13078 5.19659 5.21971 5.43975 5.46168 5.54842 5.58988 5.69846 5.72824 5.76888 5.86487 5.90592 6.00470 6.01825 6.08551 6.10688 6.24254 6.31444 6.55412 6.60936 6.66769 7.13403 7.31179 7.58971 7.93767 8.03435 8.28733 9.40833 9.95538 10.30477 11.32750 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.007977 B = 0.004989 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.072530 B = 5611.446270 C = 8731.255163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.610 5.610 6 C 0.602 3.398 7 O -0.532 6.532 8 C -0.234 4.234 9 C -0.075 4.075 10 C -0.072 4.072 11 C -0.262 4.262 12 C 0.596 3.404 13 N -0.844 5.844 14 O -0.536 6.536 15 S 0.246 5.754 16 C 0.092 3.908 17 C -0.095 4.095 18 H 0.090 0.910 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.010 4.010 24 N -0.933 5.933 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.406 0.594 37 H 0.410 0.590 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -0.988 12.123 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.113 0.887 4 C -0.009 4.009 5 N -0.343 5.343 6 C 0.390 3.610 7 O -0.411 6.411 8 C -0.356 4.356 9 C -0.109 4.109 10 C -0.105 4.105 11 C -0.383 4.383 12 C 0.380 3.620 13 N -0.408 5.408 14 O -0.414 6.414 15 S 0.517 5.483 16 C -0.032 4.032 17 C -0.114 4.114 18 H 0.108 0.892 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.175 0.825 35 H 0.173 0.827 36 H 0.236 0.764 37 H 0.242 0.758 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.216 0.784 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.774 -0.770 11.679 11.838 hybrid contribution -0.180 -0.860 -0.279 0.922 sum -1.954 -1.630 11.400 11.681 Atomic orbital electron populations 1.21795 0.93987 1.02163 1.02200 1.22422 0.96772 0.99147 0.93444 0.88653 1.22384 1.01328 0.79221 0.97948 1.48364 1.72105 1.06406 1.07438 1.16634 0.76970 0.81950 0.85418 1.90806 1.51331 1.85286 1.13666 1.24905 1.14883 0.98000 0.97823 1.20483 0.98945 0.89527 1.01924 1.20491 0.98745 1.00257 0.90989 1.25276 1.14987 0.99691 0.98393 1.17064 0.75799 0.86971 0.82170 1.43745 1.75836 1.14284 1.06951 1.90837 1.49595 1.20082 1.80926 1.85089 1.64405 0.96461 1.02352 1.22352 1.02897 0.99566 0.78402 1.22447 1.01690 0.91828 0.95476 0.89165 1.20749 0.94359 0.95948 0.85600 1.42374 1.28619 1.60447 1.06322 1.19195 1.04725 1.26135 0.87026 0.91173 1.24693 0.97484 1.00416 0.98016 1.69644 1.20062 1.37488 1.30917 0.86244 0.78800 0.77051 0.84406 1.21707 1.21770 1.20761 0.92592 0.92745 0.91220 0.90134 0.91055 0.82545 0.82739 0.76386 0.75811 0.89824 0.90464 0.95526 0.95454 0.78353 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.16 37.16 0.30 -1.23 16 2 C -0.10 -1.05 3.56 -88.36 -0.31 -1.37 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.11 1.29 6.35 -2.41 -0.02 1.27 16 5 N -0.61 -8.08 3.32 -171.74 -0.57 -8.65 16 6 C 0.60 8.87 7.82 -12.64 -0.10 8.77 16 7 O -0.53 -9.06 17.12 5.25 0.09 -8.97 16 8 C -0.23 -3.13 6.39 -36.54 -0.23 -3.36 16 9 C -0.08 -0.91 9.89 -40.69 -0.40 -1.31 16 10 C -0.07 -0.86 9.88 -40.69 -0.40 -1.27 16 11 C -0.26 -3.40 6.46 -36.54 -0.24 -3.63 16 12 C 0.60 8.22 8.07 -12.63 -0.10 8.12 16 13 N -0.84 -9.55 8.87 30.37 0.27 -9.28 16 14 O -0.54 -8.92 17.65 5.26 0.09 -8.82 16 15 S 0.25 3.10 17.70 -107.50 -1.90 1.20 16 16 C 0.09 1.23 4.27 -3.06 -0.01 1.22 16 17 C -0.09 -1.26 2.84 -88.79 -0.25 -1.52 16 18 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 19 C 0.16 2.71 4.43 -4.04 -0.02 2.69 16 20 N -0.73 -16.04 5.48 -59.91 -0.33 -16.37 16 21 C -0.24 -6.03 9.99 -15.06 -0.15 -6.18 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -25.47 13.06 55.49 0.72 -24.75 16 25 Si 0.90 20.80 29.55 -169.99 -5.02 15.78 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.77 6.79 -51.93 -0.35 0.41 16 32 H 0.08 0.91 8.00 -51.93 -0.42 0.50 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.16 1.69 8.04 -52.49 -0.42 1.27 16 35 H 0.16 1.66 8.04 -52.49 -0.42 1.24 16 36 H 0.41 4.44 7.93 -40.82 -0.32 4.11 16 37 H 0.41 3.94 8.93 -40.82 -0.36 3.58 16 38 H 0.08 1.20 6.26 -51.91 -0.33 0.87 16 39 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 40 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 41 H 0.03 0.47 6.79 -51.93 -0.35 0.11 16 42 H 0.38 8.76 7.60 -40.82 -0.31 8.45 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -31.31 367.94 -8.86 -40.17 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.73 Total: 12.33 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.03 Total: 1.84 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.10 Total: -59.05 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.90 Total: 1.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.31 -8.86 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569849690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.352 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds