Wall clock time and date at job start Tue Mar 31 2020 20:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.91431 * 2 1 4 4 C 1.55120 * 110.93387 * 124.05950 * 2 1 3 5 5 N 1.47425 * 104.94391 * 81.21888 * 4 2 1 6 6 C 1.34769 * 125.64972 * 203.96993 * 5 4 2 7 7 O 1.21630 * 119.99804 * 355.24080 * 6 5 4 8 8 C 1.47173 * 120.00389 * 175.24400 * 6 5 4 9 9 C 1.36615 * 125.16332 * 185.45925 * 8 6 5 10 10 C 1.36795 * 114.74551 * 179.78623 * 9 8 6 11 11 C 1.36617 * 114.74160 * 0.50552 * 10 9 8 12 12 C 1.47170 * 125.16144 * 179.69267 * 11 10 9 13 13 N 1.34777 * 120.00104 * 180.02562 * 12 11 10 14 14 O 1.21625 * 120.00039 * 0.02562 * 12 11 10 15 15 S 1.75834 * 125.15728 * 5.76190 * 8 6 5 16 16 C 1.47023 * 108.70349 * 23.99889 * 5 4 2 17 17 C 1.54328 * 107.26972 * 358.94224 * 16 5 4 18 18 H 1.08997 * 110.71528 * 96.34844 * 17 16 5 19 19 C 1.52999 * 110.72137 * 219.44101 * 17 16 5 20 20 N 1.46496 * 109.47345 * 291.16513 * 19 17 16 21 21 C 1.36941 * 120.00290 * 180.27641 * 20 19 17 22 22 H 1.07998 * 119.99687 * 359.71883 * 21 20 19 23 23 C 1.38804 * 120.00218 * 179.72145 * 21 20 19 24 24 N 1.31620 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00046 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47083 * 90.00051 * 25 23 21 27 27 H 1.48501 * 109.47198 * 209.99631 * 25 23 21 28 28 H 1.48496 * 109.47097 * 329.99982 * 25 23 21 29 29 H 1.09003 * 109.47229 * 183.89860 * 1 2 3 30 30 H 1.09002 * 109.47304 * 303.89860 * 1 2 3 31 31 H 1.09001 * 109.47366 * 63.89790 * 1 2 3 32 32 H 1.09000 * 110.42146 * 322.28661 * 4 2 1 33 33 H 1.09011 * 110.29703 * 200.08029 * 4 2 1 34 34 H 1.07999 * 122.62582 * 359.97438 * 9 8 6 35 35 H 1.07995 * 122.63265 * 180.22873 * 10 9 8 36 36 H 0.96999 * 120.00229 * 359.97438 * 13 12 11 37 37 H 0.96998 * 119.99773 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.88337 * 239.52619 * 16 5 4 39 39 H 1.08996 * 109.88615 * 118.36204 * 16 5 4 40 40 H 1.08994 * 109.47375 * 171.15653 * 19 17 16 41 41 H 1.09004 * 109.46939 * 51.15726 * 19 17 16 42 42 H 0.97007 * 120.00299 * 359.97438 * 20 19 17 43 43 H 0.97005 * 120.00141 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0842 -0.8114 1.2003 5 7 2.0169 -2.2200 0.7704 6 6 1.9527 -3.2888 1.5889 7 8 2.0340 -3.1383 2.7931 8 6 1.7842 -4.6380 1.0256 9 6 1.6008 -5.7781 1.7556 10 6 1.4629 -6.9181 1.0122 11 6 1.5417 -6.7325 -0.3390 12 6 1.4314 -7.7976 -1.3486 13 7 1.5254 -7.4965 -2.6589 14 8 1.2554 -8.9496 -1.0005 15 16 1.7958 -5.0281 -0.6889 16 6 2.0323 -2.2657 -0.6990 17 6 2.0861 -0.8078 -1.2022 18 1 3.1122 -0.5137 -1.4229 19 6 1.1965 -0.6270 -2.4339 20 7 1.7784 -1.3505 -3.5670 21 6 1.1555 -1.3283 -4.7864 22 1 0.2328 -0.7812 -4.9114 23 6 1.7099 -2.0089 -5.8615 24 7 2.8347 -2.6753 -5.7092 25 14 0.8598 -1.9792 -7.5246 26 1 1.3602 -0.8265 -8.3158 27 1 1.1495 -3.2414 -8.2513 28 1 -0.6062 -1.8461 -7.3288 29 1 -0.3634 -1.0253 0.0699 30 1 -0.3634 0.5732 0.8530 31 1 -0.3634 0.4521 -0.9229 32 1 1.4653 -0.6544 2.0837 33 1 3.1162 -0.5262 1.4052 34 1 1.5645 -5.7788 2.8350 35 1 1.3084 -7.8893 1.4585 36 1 1.6654 -6.5777 -2.9366 37 1 1.4531 -8.1986 -3.3243 38 1 1.1271 -2.7508 -1.0643 39 1 2.9117 -2.8096 -1.0439 40 1 1.1245 0.4328 -2.6777 41 1 0.2016 -1.0201 -2.2243 42 1 2.6074 -1.8417 -3.4549 43 1 3.2224 -3.1507 -6.4607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569849690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:49 Heat of formation + Delta-G solvation = -49.831896 kcal Electronic energy + Delta-G solvation = -27031.357578 eV Core-core repulsion = 23202.351269 eV Total energy + Delta-G solvation = -3829.006309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46752 -40.70337 -39.46641 -37.97373 -36.36717 -34.89209 -34.31588 -32.98661 -31.16084 -30.45508 -28.27522 -27.06696 -26.46196 -24.85904 -23.29577 -22.83966 -21.70203 -20.68650 -20.12849 -19.25597 -18.95829 -18.12926 -17.96903 -17.54633 -16.71469 -16.66506 -16.57076 -16.08209 -15.76828 -15.47412 -15.33375 -15.26846 -14.69560 -14.62810 -14.14769 -14.04562 -13.83568 -13.71313 -13.45086 -13.21680 -13.08284 -13.03593 -12.78731 -12.68526 -12.14531 -12.10939 -11.85233 -11.71318 -11.56254 -11.49699 -11.33791 -11.26937 -10.92084 -10.85090 -10.16488 -9.87502 -9.61489 -8.90062 -7.87375 -5.14229 -1.06763 0.19531 0.58233 0.89818 1.52303 1.54709 1.60834 1.72644 1.82815 2.06264 2.32744 2.61405 3.16641 3.41011 3.49109 3.63028 3.76102 3.80120 4.05309 4.14413 4.16622 4.23823 4.35754 4.49064 4.54583 4.66378 4.76328 4.78481 4.80846 4.87441 4.91276 5.02080 5.05153 5.13634 5.23237 5.24801 5.32895 5.49754 5.60230 5.67061 6.11578 6.21217 6.35058 6.82240 7.01721 7.43419 8.17202 8.41334 9.35212 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.007977 B = 0.004989 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.072530 B = 5611.446270 C = 8731.255163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.121 0.879 4 C 0.109 3.891 5 N -0.607 5.607 6 C 0.600 3.400 7 O -0.559 6.559 8 C -0.249 4.249 9 C -0.066 4.066 10 C -0.066 4.066 11 C -0.272 4.272 12 C 0.595 3.405 13 N -0.832 5.832 14 O -0.568 6.568 15 S 0.251 5.749 16 C 0.096 3.904 17 C -0.089 4.089 18 H 0.092 0.908 19 C 0.163 3.837 20 N -0.742 5.742 21 C -0.238 4.238 22 H 0.073 0.927 23 C -0.063 4.063 24 N -0.961 5.961 25 Si 0.958 3.042 26 H -0.293 1.293 27 H -0.297 1.297 28 H -0.273 1.273 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.410 0.590 37 H 0.419 0.581 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.376 0.624 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 0.068 12.703 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.139 0.861 4 C -0.012 4.012 5 N -0.339 5.339 6 C 0.389 3.611 7 O -0.441 6.441 8 C -0.371 4.371 9 C -0.100 4.100 10 C -0.100 4.100 11 C -0.393 4.393 12 C 0.380 3.620 13 N -0.395 5.395 14 O -0.450 6.450 15 S 0.522 5.478 16 C -0.028 4.028 17 C -0.109 4.109 18 H 0.110 0.890 19 C 0.037 3.963 20 N -0.385 5.385 21 C -0.370 4.370 22 H 0.091 0.909 23 C -0.256 4.256 24 N -0.612 5.612 25 Si 0.789 3.211 26 H -0.221 1.221 27 H -0.224 1.224 28 H -0.198 1.198 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.188 0.812 35 H 0.186 0.814 36 H 0.240 0.760 37 H 0.252 0.748 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.208 0.792 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.308 0.339 12.241 12.461 hybrid contribution -0.056 -1.134 -0.429 1.213 sum -2.363 -0.795 11.812 12.072 Atomic orbital electron populations 1.21788 0.93841 1.01513 1.02904 1.22425 0.96761 0.99863 0.91383 0.86123 1.22563 1.02246 0.78096 0.98266 1.48400 1.71260 1.07061 1.07164 1.16784 0.76640 0.82530 0.85179 1.90786 1.52899 1.85747 1.14634 1.24932 1.15955 0.97959 0.98270 1.20654 0.97738 0.89023 1.02606 1.20667 0.97808 1.00830 0.90652 1.25315 1.15618 0.99642 0.98742 1.17190 0.75401 0.86643 0.82812 1.43677 1.74585 1.14765 1.06518 1.90819 1.51428 1.21242 1.81467 1.85051 1.64459 0.96226 1.02018 1.22249 1.02291 0.99659 0.78583 1.22332 1.01205 0.92327 0.94993 0.89006 1.20846 0.94819 0.95263 0.85375 1.42533 1.28356 1.60806 1.06795 1.19523 1.04482 1.24752 0.88195 0.90942 1.25301 0.98371 1.01157 1.00786 1.69762 1.21375 1.38785 1.31263 0.85377 0.78349 0.76311 0.81113 1.22107 1.22422 1.19833 0.94109 0.90842 0.91553 0.89749 0.89874 0.81189 0.81427 0.75997 0.74815 0.90657 0.90911 0.95157 0.95249 0.79152 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.16 71.98 0.59 -2.13 16 2 C -0.09 -1.59 3.56 -9.33 -0.03 -1.63 16 3 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 4 C 0.11 2.25 6.35 86.93 0.55 2.80 16 5 N -0.61 -15.31 3.32 -815.51 -2.70 -18.02 16 6 C 0.60 17.14 7.82 86.59 0.68 17.82 16 7 O -0.56 -18.57 17.12 -4.13 -0.07 -18.64 16 8 C -0.25 -6.48 6.39 24.24 0.15 -6.33 16 9 C -0.07 -1.54 9.89 21.55 0.21 -1.32 16 10 C -0.07 -1.53 9.88 21.55 0.21 -1.32 16 11 C -0.27 -6.89 6.46 24.24 0.16 -6.73 16 12 C 0.59 16.21 8.07 86.59 0.70 16.91 16 13 N -0.83 -18.47 8.87 -176.07 -1.56 -20.03 16 14 O -0.57 -18.80 17.65 -4.11 -0.07 -18.87 16 15 S 0.25 6.23 17.70 -56.49 -1.00 5.23 16 16 C 0.10 2.50 4.27 86.73 0.37 2.87 16 17 C -0.09 -2.22 2.84 -9.61 -0.03 -2.25 16 18 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 19 C 0.16 5.26 4.43 86.38 0.38 5.64 16 20 N -0.74 -31.93 5.48 -343.47 -1.88 -33.81 16 21 C -0.24 -11.77 9.99 84.03 0.84 -10.93 16 22 H 0.07 3.50 7.83 -2.91 -0.02 3.47 16 23 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 24 N -0.96 -52.65 13.06 21.65 0.28 -52.37 16 25 Si 0.96 42.49 29.55 68.60 2.03 44.52 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 27 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 29 H 0.04 0.89 7.92 -2.39 -0.02 0.88 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.31 6.79 -2.39 -0.02 1.29 16 32 H 0.08 1.71 8.00 -2.39 -0.02 1.70 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.17 3.43 8.04 -2.91 -0.02 3.41 16 35 H 0.17 3.40 8.04 -2.91 -0.02 3.38 16 36 H 0.41 8.79 7.93 -92.71 -0.74 8.06 16 37 H 0.42 7.83 8.93 -92.71 -0.83 7.01 16 38 H 0.08 2.11 6.26 -2.40 -0.02 2.09 16 39 H 0.07 1.97 7.13 -2.39 -0.02 1.96 16 40 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.03 0.96 6.79 -2.38 -0.02 0.94 16 42 H 0.38 17.13 7.60 -92.70 -0.70 16.42 16 43 H 0.25 13.46 8.31 -92.70 -0.77 12.69 16 Total: -1.00 -65.50 367.94 -0.91 -66.42 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -1.19 Total: 34.99 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 5.25 Total: 10.59 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -5.86 Total: -124.23 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.14 Total: -37.51 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.00 Total: 5.23 kcal Total: -65.50 -0.91 -66.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569849690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.584 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds