Wall clock time and date at job start Tue Mar 31 2020 20:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41596 * 114.00083 * 2 1 4 4 C 1.34777 * 120.00020 * 269.99867 * 3 2 1 5 5 O 1.21285 * 119.99753 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.00184 * 0.02562 * 4 3 2 7 7 C 1.50699 * 109.47244 * 179.97438 * 6 4 3 8 8 C 1.38304 * 119.93119 * 269.72556 * 7 6 4 9 9 C 1.38097 * 120.07075 * 179.72825 * 8 7 6 10 10 C 1.38884 * 119.92504 * 0.56571 * 9 8 7 11 11 O 1.35748 * 120.06352 * 179.68441 * 10 9 8 12 12 C 1.34835 * 117.00034 * 174.48922 * 11 10 9 13 13 H 1.08000 * 119.99515 * 5.05496 * 12 11 10 14 14 C 1.38656 * 120.00273 * 185.06052 * 12 11 10 15 15 N 1.31559 * 119.99881 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99733 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47437 * 89.99834 * 16 14 12 18 18 H 1.48502 * 109.47123 * 209.99670 * 16 14 12 19 19 H 1.48502 * 109.47676 * 329.99705 * 16 14 12 20 20 C 1.38872 * 119.86403 * 359.70733 * 10 9 8 21 21 C 1.38102 * 119.93144 * 0.02562 * 20 10 9 22 22 C 1.46501 * 119.99928 * 89.99830 * 3 2 1 23 23 H 1.08996 * 109.46967 * 0.02562 * 22 3 2 24 24 C 1.53001 * 109.47302 * 239.99948 * 22 3 2 25 25 C 1.52998 * 109.47103 * 120.00422 * 22 3 2 26 26 C 1.50703 * 109.47077 * 294.99871 * 25 22 3 27 27 O 1.20825 * 119.99977 * 359.97438 * 26 25 22 28 28 O 1.34233 * 120.00244 * 180.02562 * 26 25 22 29 29 H 1.09000 * 109.47725 * 300.00193 * 1 2 3 30 30 H 1.09007 * 109.47434 * 60.00321 * 1 2 3 31 31 H 1.09005 * 109.47104 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46901 * 300.00005 * 6 4 3 33 33 H 1.09000 * 109.47196 * 59.99789 * 6 4 3 34 34 H 1.08007 * 119.96357 * 359.97438 * 8 7 6 35 35 H 1.07997 * 120.03964 * 180.27464 * 9 8 7 36 36 H 0.96996 * 119.99728 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.03560 * 179.97438 * 20 10 9 38 38 H 1.08008 * 119.96153 * 179.97438 * 21 20 10 39 39 H 1.09000 * 109.46840 * 59.99981 * 24 22 3 40 40 H 1.09005 * 109.46967 * 300.00495 * 24 22 3 41 41 H 1.08997 * 109.47559 * 180.02562 * 24 22 3 42 42 H 1.09001 * 109.47288 * 54.99476 * 25 22 3 43 43 H 1.09004 * 109.47500 * 175.00235 * 25 22 3 44 44 H 0.96702 * 116.99775 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2790 1.9092 -1.1672 5 8 2.7719 3.0173 -1.1671 6 6 1.9720 1.2211 -2.4723 7 6 2.3699 2.1159 -3.6177 8 6 1.4554 3.0092 -4.1455 9 6 1.8187 3.8345 -5.1914 10 6 3.1003 3.7585 -5.7210 11 8 3.4584 4.5639 -6.7534 12 6 4.7480 4.5209 -7.1446 13 1 5.4245 3.8079 -6.6969 14 6 5.2057 5.3921 -8.1214 15 7 4.3815 6.2604 -8.6669 16 14 6.9925 5.3329 -8.6626 17 1 7.1357 4.3824 -9.7946 18 1 7.4238 6.6865 -9.0953 19 1 7.8388 4.8829 -7.5284 20 6 4.0145 2.8565 -5.1927 21 6 3.6468 2.0378 -4.1430 22 6 2.3028 1.9627 1.2687 23 1 2.0151 1.3154 2.0972 24 6 1.5194 3.2744 1.3498 25 6 3.8018 2.2582 1.3498 26 6 4.5678 0.9612 1.3937 27 8 3.9756 -0.0915 1.3637 28 8 5.9081 0.9754 1.4671 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.5299 0.2864 -2.5302 33 1 0.9040 1.0110 -2.5299 34 1 0.4573 3.0642 -3.7365 35 1 1.1055 4.5350 -5.6002 36 1 4.7016 6.8695 -9.3505 37 1 5.0118 2.7948 -5.6027 38 1 4.3573 1.3358 -3.7320 39 1 0.4514 3.0639 1.2920 40 1 1.8075 3.9215 0.5212 41 1 1.7413 3.7726 2.2935 42 1 4.1071 2.8310 0.4741 43 1 4.0104 2.8341 2.2515 44 1 6.3554 0.1184 1.4925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606986512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:54 Heat of formation + Delta-G solvation = -116.477981 kcal Electronic energy + Delta-G solvation = -29486.312694 eV Core-core repulsion = 25179.370772 eV Total energy + Delta-G solvation = -4306.941922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77669 -39.83790 -38.87506 -37.44145 -36.57191 -36.27939 -35.01007 -32.45129 -31.68625 -30.58770 -30.11189 -28.75495 -27.03264 -26.24824 -25.10436 -23.32058 -21.94546 -21.81304 -20.47253 -19.71118 -18.24113 -17.99220 -17.93413 -17.05034 -16.83595 -16.37294 -16.18142 -15.68328 -14.95835 -14.60417 -14.49009 -14.36219 -14.24858 -14.07402 -14.06784 -13.55780 -13.44515 -13.28734 -13.10064 -12.71304 -12.63912 -12.40274 -12.21571 -12.05127 -11.76525 -11.62585 -11.57923 -11.44022 -11.22932 -10.82503 -10.75342 -10.67855 -10.62948 -10.57675 -10.40035 -9.57712 -9.28854 -9.15095 -8.78706 -8.11621 -7.12962 -6.41428 -3.99912 1.70947 2.09784 2.28458 2.34734 2.54074 2.84984 3.15207 3.16593 3.21413 3.93042 4.00321 4.41895 4.60935 4.67157 4.80207 4.95887 4.97519 5.05121 5.10347 5.13057 5.18595 5.25537 5.31915 5.35925 5.38679 5.45035 5.49992 5.67140 5.75914 5.80335 5.87981 6.00783 6.25284 6.30781 6.35492 6.45728 6.73839 6.95039 7.09107 7.27185 7.36022 7.41462 7.48784 7.75314 7.87361 8.04027 8.07983 9.04449 9.75019 10.76762 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.002737 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.226031 B =10228.370942 C =11164.807515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.126 6.126 3 N -0.477 5.477 4 C 0.522 3.478 5 O -0.502 6.502 6 C -0.075 4.075 7 C -0.171 4.171 8 C -0.060 4.060 9 C -0.191 4.191 10 C 0.157 3.843 11 O -0.178 6.178 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.864 5.864 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.267 1.267 20 C -0.231 4.231 21 C -0.055 4.055 22 C 0.162 3.838 23 H 0.100 0.900 24 C -0.175 4.175 25 C -0.136 4.136 26 C 0.475 3.525 27 O -0.500 6.500 28 O -0.520 6.520 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.269 0.731 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 -11.296 21.661 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.130 6.130 3 N -0.257 5.257 4 C 0.313 3.687 5 O -0.376 6.376 6 C -0.114 4.114 7 C -0.173 4.173 8 C -0.078 4.078 9 C -0.210 4.210 10 C 0.103 3.897 11 O -0.082 6.082 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.251 4.251 21 C -0.074 4.074 22 C 0.061 3.939 23 H 0.118 0.882 24 C -0.233 4.233 25 C -0.174 4.174 26 C 0.317 3.683 27 O -0.387 6.387 28 O -0.332 6.332 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.191 -10.419 21.304 24.277 hybrid contribution 0.892 -0.762 -0.119 1.179 sum -4.299 -11.181 21.184 24.337 Atomic orbital electron populations 1.23410 0.82496 1.03722 1.01224 1.90772 1.19126 1.06439 1.96664 1.50288 1.59726 1.10045 1.05680 1.21279 0.77368 0.85443 0.84588 1.90716 1.42808 1.18472 1.85639 1.20377 1.02777 0.98747 0.89525 1.18662 0.95534 1.02925 1.00146 1.20377 0.97716 0.94477 0.95222 1.20143 0.95540 1.04432 1.00907 1.19374 0.93061 0.89837 0.87387 1.83976 1.29078 1.54427 1.40697 1.21332 0.83555 1.20125 1.21692 0.89082 1.25281 1.00078 0.95023 0.96138 1.70041 1.35170 1.19215 1.25447 0.85720 0.80552 0.78027 0.79188 1.19908 1.20266 1.19178 1.21103 1.01167 1.01158 1.01647 1.20510 0.94498 0.97342 0.95029 1.21032 0.92388 0.94265 0.86263 0.88181 1.22320 0.99872 0.96802 1.04309 1.21921 0.93715 0.93915 1.07892 1.23414 0.80626 0.92223 0.72084 1.90770 1.69722 1.33429 1.44791 1.84549 1.21973 1.41017 1.85620 0.93114 0.92847 0.87731 0.88570 0.89245 0.87512 0.86562 0.92068 0.85588 0.87886 0.92015 0.89354 0.90861 0.85064 0.86449 0.73325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 11.44 101.05 1.16 1.08 16 2 O -0.13 -1.42 10.29 -14.66 -0.15 -1.57 16 3 N -0.48 -5.63 2.15 -53.81 -0.12 -5.75 16 4 C 0.52 7.42 7.16 -10.99 -0.08 7.34 16 5 O -0.50 -8.46 12.21 5.55 0.07 -8.39 16 6 C -0.07 -1.03 5.13 -29.04 -0.15 -1.18 16 7 C -0.17 -3.03 4.38 -104.58 -0.46 -3.49 16 8 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 9 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 10 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 11 O -0.18 -5.20 9.76 0.04 0.00 -5.20 16 12 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 13 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 16 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 C -0.23 -5.23 9.17 -39.40 -0.36 -5.59 16 21 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 22 C 0.16 1.58 2.49 -67.93 -0.17 1.41 16 23 H 0.10 0.88 7.94 -51.93 -0.41 0.47 16 24 C -0.18 -1.50 9.12 37.16 0.34 -1.16 16 25 C -0.14 -1.33 5.16 -27.88 -0.14 -1.47 16 26 C 0.47 5.24 8.19 36.01 0.29 5.54 16 27 O -0.50 -6.73 15.64 -21.42 -0.33 -7.06 16 28 O -0.52 -4.80 13.42 -39.26 -0.53 -5.33 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.39 7.13 -51.93 -0.37 0.02 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 33 H 0.09 1.03 7.07 -51.93 -0.37 0.67 16 34 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 35 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 38 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.00 6.17 -51.93 -0.32 0.68 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.13 1.58 6.04 -51.93 -0.31 1.27 16 43 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.41 2.12 9.10 45.56 0.41 2.53 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -35.81 376.83 -5.32 -41.12 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.87 Total: 6.80 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.79 Total: -11.24 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.64 Total: -30.66 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.94 Total: -27.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.81 -5.32 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606986512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.353 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds