Wall clock time and date at job start Tue Mar 31 2020 20:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41596 * 114.00083 * 2 1 4 4 C 1.34777 * 120.00020 * 269.99867 * 3 2 1 5 5 O 1.21285 * 119.99753 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.00184 * 0.02562 * 4 3 2 7 7 C 1.50699 * 109.47244 * 179.97438 * 6 4 3 8 8 C 1.38304 * 119.93119 * 269.72556 * 7 6 4 9 9 C 1.38097 * 120.07075 * 179.72825 * 8 7 6 10 10 C 1.38884 * 119.92504 * 0.56571 * 9 8 7 11 11 O 1.35748 * 120.06352 * 179.68441 * 10 9 8 12 12 C 1.34835 * 117.00034 * 174.48922 * 11 10 9 13 13 H 1.08000 * 119.99515 * 5.05496 * 12 11 10 14 14 C 1.38656 * 120.00273 * 185.06052 * 12 11 10 15 15 N 1.31559 * 119.99881 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99733 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47437 * 89.99834 * 16 14 12 18 18 H 1.48502 * 109.47123 * 209.99670 * 16 14 12 19 19 H 1.48502 * 109.47676 * 329.99705 * 16 14 12 20 20 C 1.38872 * 119.86403 * 359.70733 * 10 9 8 21 21 C 1.38102 * 119.93144 * 0.02562 * 20 10 9 22 22 C 1.46501 * 119.99928 * 89.99830 * 3 2 1 23 23 H 1.08996 * 109.46967 * 0.02562 * 22 3 2 24 24 C 1.53001 * 109.47302 * 239.99948 * 22 3 2 25 25 C 1.52998 * 109.47103 * 120.00422 * 22 3 2 26 26 C 1.50703 * 109.47077 * 294.99871 * 25 22 3 27 27 O 1.20825 * 119.99977 * 359.97438 * 26 25 22 28 28 O 1.34233 * 120.00244 * 180.02562 * 26 25 22 29 29 H 1.09000 * 109.47725 * 300.00193 * 1 2 3 30 30 H 1.09007 * 109.47434 * 60.00321 * 1 2 3 31 31 H 1.09005 * 109.47104 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46901 * 300.00005 * 6 4 3 33 33 H 1.09000 * 109.47196 * 59.99789 * 6 4 3 34 34 H 1.08007 * 119.96357 * 359.97438 * 8 7 6 35 35 H 1.07997 * 120.03964 * 180.27464 * 9 8 7 36 36 H 0.96996 * 119.99728 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.03560 * 179.97438 * 20 10 9 38 38 H 1.08008 * 119.96153 * 179.97438 * 21 20 10 39 39 H 1.09000 * 109.46840 * 59.99981 * 24 22 3 40 40 H 1.09005 * 109.46967 * 300.00495 * 24 22 3 41 41 H 1.08997 * 109.47559 * 180.02562 * 24 22 3 42 42 H 1.09001 * 109.47288 * 54.99476 * 25 22 3 43 43 H 1.09004 * 109.47500 * 175.00235 * 25 22 3 44 44 H 0.96702 * 116.99775 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2790 1.9092 -1.1672 5 8 2.7719 3.0173 -1.1671 6 6 1.9720 1.2211 -2.4723 7 6 2.3699 2.1159 -3.6177 8 6 1.4554 3.0092 -4.1455 9 6 1.8187 3.8345 -5.1914 10 6 3.1003 3.7585 -5.7210 11 8 3.4584 4.5639 -6.7534 12 6 4.7480 4.5209 -7.1446 13 1 5.4245 3.8079 -6.6969 14 6 5.2057 5.3921 -8.1214 15 7 4.3815 6.2604 -8.6669 16 14 6.9925 5.3329 -8.6626 17 1 7.1357 4.3824 -9.7946 18 1 7.4238 6.6865 -9.0953 19 1 7.8388 4.8829 -7.5284 20 6 4.0145 2.8565 -5.1927 21 6 3.6468 2.0378 -4.1430 22 6 2.3028 1.9627 1.2687 23 1 2.0151 1.3154 2.0972 24 6 1.5194 3.2744 1.3498 25 6 3.8018 2.2582 1.3498 26 6 4.5678 0.9612 1.3937 27 8 3.9756 -0.0915 1.3637 28 8 5.9081 0.9754 1.4671 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.5299 0.2864 -2.5302 33 1 0.9040 1.0110 -2.5299 34 1 0.4573 3.0642 -3.7365 35 1 1.1055 4.5350 -5.6002 36 1 4.7016 6.8695 -9.3505 37 1 5.0118 2.7948 -5.6027 38 1 4.3573 1.3358 -3.7320 39 1 0.4514 3.0639 1.2920 40 1 1.8075 3.9215 0.5212 41 1 1.7413 3.7726 2.2935 42 1 4.1071 2.8310 0.4741 43 1 4.0104 2.8341 2.2515 44 1 6.3554 0.1184 1.4925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606986512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:53 Heat of formation + Delta-G solvation = -140.749325 kcal Electronic energy + Delta-G solvation = -29487.365179 eV Core-core repulsion = 25179.370772 eV Total energy + Delta-G solvation = -4307.994407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69677 -40.94685 -40.46106 -38.56232 -38.02707 -37.13552 -35.86512 -34.38405 -33.05389 -31.80946 -31.64665 -29.49122 -28.33065 -27.34109 -26.78466 -24.23935 -23.64068 -22.82165 -21.91998 -20.60296 -19.84983 -19.14405 -18.95136 -18.71899 -17.83273 -17.24903 -17.07714 -16.61768 -16.35023 -16.32879 -15.86847 -15.57199 -15.52759 -15.20527 -15.14374 -14.96438 -14.77464 -14.42415 -14.18601 -14.08352 -13.80611 -13.61927 -13.21779 -13.06458 -12.97788 -12.77797 -12.61439 -12.51254 -12.43175 -12.36028 -12.27370 -12.20483 -12.12058 -11.53035 -11.40382 -11.17979 -10.81726 -10.58541 -10.05357 -9.77201 -8.91104 -8.46991 -6.15065 0.60784 0.62205 0.95899 1.26819 1.34556 1.43929 1.48921 1.52335 2.15407 2.18045 2.75736 3.04346 3.28390 3.52141 3.68316 3.84396 3.94905 4.01799 4.10806 4.17460 4.26142 4.37488 4.43942 4.46920 4.49941 4.54950 4.60318 4.64773 4.70007 4.78729 4.80039 4.82913 5.00022 5.07999 5.14727 5.28861 5.31501 5.47130 5.55627 5.65716 5.71312 5.76864 6.03150 6.20537 6.48167 6.97692 7.02927 7.06798 7.78452 8.76386 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.002737 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.226031 B =10228.370942 C =11164.807515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.142 6.142 3 N -0.471 5.471 4 C 0.521 3.479 5 O -0.538 6.538 6 C -0.075 4.075 7 C -0.145 4.145 8 C -0.054 4.054 9 C -0.202 4.202 10 C 0.115 3.885 11 O -0.232 6.232 12 C -0.415 4.415 13 H 0.099 0.901 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.018 2.982 17 H -0.261 1.261 18 H -0.270 1.270 19 H -0.255 1.255 20 C -0.241 4.241 21 C -0.060 4.060 22 C 0.159 3.841 23 H 0.113 0.887 24 C -0.168 4.168 25 C -0.136 4.136 26 C 0.476 3.524 27 O -0.528 6.528 28 O -0.521 6.521 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.273 0.727 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.149 0.851 44 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -13.414 24.549 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.146 6.146 3 N -0.250 5.250 4 C 0.312 3.688 5 O -0.415 6.415 6 C -0.114 4.114 7 C -0.146 4.146 8 C -0.071 4.071 9 C -0.221 4.221 10 C 0.065 3.935 11 O -0.139 6.139 12 C -0.491 4.491 13 H 0.117 0.883 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.837 3.163 17 H -0.186 1.186 18 H -0.194 1.194 19 H -0.179 1.179 20 C -0.261 4.261 21 C -0.078 4.078 22 C 0.058 3.942 23 H 0.131 0.869 24 C -0.225 4.225 25 C -0.174 4.174 26 C 0.319 3.681 27 O -0.417 6.417 28 O -0.335 6.335 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.167 0.833 44 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -5.547 -12.603 24.261 27.896 hybrid contribution 0.808 -0.342 -0.685 1.113 sum -4.740 -12.945 23.575 27.310 Atomic orbital electron populations 1.23648 0.80394 1.05394 1.01953 1.90752 1.21327 1.05753 1.96779 1.50183 1.59027 1.10099 1.05657 1.21110 0.77322 0.85067 0.85282 1.90732 1.44511 1.19909 1.86322 1.20442 1.05027 0.98086 0.87843 1.19152 0.94297 1.01445 0.99678 1.20818 0.99714 0.93055 0.93558 1.20428 0.94553 1.05289 1.01840 1.19913 0.94870 0.90736 0.87989 1.83938 1.29562 1.57003 1.43350 1.21814 0.84035 1.20853 1.22368 0.88322 1.26584 1.05304 0.94258 0.95830 1.70184 1.37816 1.20911 1.26969 0.84597 0.74021 0.78515 0.79133 1.18606 1.19445 1.17871 1.21189 1.00569 1.01609 1.02685 1.20849 0.95971 0.97041 0.93942 1.21247 0.92532 0.94833 0.85567 0.86856 1.22258 1.00045 0.95745 1.04492 1.21975 0.93644 0.93433 1.08371 1.23638 0.80988 0.92206 0.71245 1.90756 1.70287 1.34380 1.46277 1.84521 1.21373 1.42473 1.85090 0.92099 0.92392 0.85547 0.87141 0.86092 0.83486 0.86695 0.91811 0.86511 0.85194 0.91260 0.92158 0.88296 0.87285 0.83295 0.71409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.18 11.44 113.37 1.30 1.11 16 2 O -0.14 -2.71 10.29 -35.72 -0.37 -3.08 16 3 N -0.47 -9.77 2.15 -442.54 -0.95 -10.72 16 4 C 0.52 13.44 7.16 87.66 0.63 14.06 16 5 O -0.54 -17.31 12.21 -3.04 -0.04 -17.35 16 6 C -0.07 -1.80 5.13 29.10 0.15 -1.65 16 7 C -0.14 -4.78 4.38 -19.84 -0.09 -4.87 16 8 C -0.05 -1.87 9.69 22.25 0.22 -1.66 16 9 C -0.20 -8.97 9.99 22.39 0.22 -8.74 16 10 C 0.12 6.00 6.65 22.58 0.15 6.15 16 11 O -0.23 -14.44 9.76 -22.77 -0.22 -14.66 16 12 C -0.41 -24.96 9.49 67.92 0.64 -24.32 16 13 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 14 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 15 N -0.92 -57.65 13.67 21.61 0.30 -57.35 16 16 Si 1.02 43.99 29.55 68.60 2.03 46.01 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 20 C -0.24 -11.18 9.17 22.39 0.21 -10.97 16 21 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 22 C 0.16 2.67 2.49 44.99 0.11 2.78 16 23 H 0.11 1.63 7.94 -2.39 -0.02 1.61 16 24 C -0.17 -2.43 9.12 71.98 0.66 -1.77 16 25 C -0.14 -2.36 5.16 29.85 0.15 -2.21 16 26 C 0.48 9.55 8.19 71.24 0.58 10.13 16 27 O -0.53 -13.11 15.64 24.52 0.38 -12.73 16 28 O -0.52 -8.62 13.42 -51.44 -0.69 -9.31 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.60 7.13 -2.38 -0.02 0.59 16 31 H 0.13 0.87 8.14 -2.38 -0.02 0.86 16 32 H 0.11 2.44 8.09 -2.38 -0.02 2.42 16 33 H 0.12 2.20 7.07 -2.39 -0.02 2.18 16 34 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 35 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 38 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 1.27 6.17 -2.38 -0.01 1.26 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 2.51 6.04 -2.39 -0.01 2.49 16 43 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.42 3.59 9.10 -74.06 -0.67 2.92 16 Total: -1.00 -83.48 376.83 6.43 -77.05 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.38 Total: 26.95 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 5.61 Total: -24.82 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -0.66 Total: -68.07 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -0.93 Total: -57.12 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -83.48 6.43 -77.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606986512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.697 kcal (2) G-P(sol) polarization free energy of solvation -83.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds