Wall clock time and date at job start Tue Mar 31 2020 20:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.74529 * 2 1 4 4 C 1.55300 * 110.84914 * 236.52705 * 2 1 3 5 5 C 1.54939 * 100.94572 * 207.67428 * 4 2 1 6 6 H 1.09000 * 110.31382 * 277.43684 * 5 4 2 7 7 C 1.50695 * 110.31614 * 155.35877 * 5 4 2 8 8 O 1.21280 * 120.00529 * 250.62452 * 7 5 4 9 9 N 1.34777 * 120.00068 * 70.61169 * 7 5 4 10 10 C 1.46493 * 120.00463 * 184.73353 * 9 7 5 11 11 C 1.50700 * 109.47647 * 270.00723 * 10 9 7 12 12 H 1.07998 * 119.99725 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00071 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00324 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99588 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47445 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46753 * 120.00043 * 15 13 11 18 18 H 1.48495 * 109.47200 * 240.00034 * 15 13 11 19 19 C 1.46505 * 119.99528 * 4.74343 * 9 7 5 20 20 C 1.50701 * 109.47402 * 95.57289 * 19 9 7 21 21 C 1.34514 * 125.79162 * 95.36262 * 20 19 9 22 22 C 1.41378 * 106.84155 * 179.88994 * 21 20 19 23 23 C 1.34522 * 106.83952 * 0.37160 * 22 21 20 24 24 O 1.34299 * 108.42004 * 359.77336 * 23 22 21 25 25 O 1.43652 * 105.22008 * 36.39465 * 5 4 2 26 26 C 1.43376 * 109.89243 * 335.69830 * 25 5 4 27 27 H 1.09005 * 109.96274 * 121.16992 * 26 25 5 28 28 C 1.50697 * 109.75293 * 242.09284 * 26 25 5 29 29 O 1.20818 * 119.99818 * 3.11078 * 28 26 25 30 30 O 1.34231 * 119.99945 * 183.11603 * 28 26 25 31 31 H 1.09005 * 109.47110 * 183.46914 * 1 2 3 32 32 H 1.08997 * 109.47298 * 303.47498 * 1 2 3 33 33 H 1.09002 * 109.47143 * 63.47664 * 1 2 3 34 34 H 1.09001 * 111.12682 * 89.75252 * 4 2 1 35 35 H 1.09003 * 111.16254 * 325.61276 * 4 2 1 36 36 H 1.09007 * 109.47143 * 30.00588 * 10 9 7 37 37 H 1.09002 * 109.47486 * 150.00560 * 10 9 7 38 38 H 0.97001 * 120.00176 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46512 * 215.57206 * 19 9 7 40 40 H 1.08999 * 109.47232 * 335.56768 * 19 9 7 41 41 H 1.07995 * 126.57867 * 0.02562 * 21 20 19 42 42 H 1.08003 * 126.58318 * 180.16287 * 22 21 20 43 43 H 1.07999 * 125.79006 * 179.79185 * 23 22 21 44 44 H 0.96699 * 116.99887 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9161 1.0193 0.0000 4 6 2.0828 -0.8005 -1.2106 5 6 3.4464 -1.2770 -0.6503 6 1 4.1940 -0.4906 -0.7545 7 6 3.8982 -2.5248 -1.3643 8 8 3.8980 -3.5896 -0.7835 9 7 4.3022 -2.4577 -2.6483 10 6 4.6424 -3.6838 -3.3742 11 6 6.1077 -3.9852 -3.1925 12 1 6.7241 -3.3287 -2.5962 13 6 6.6615 -5.0989 -3.7875 14 7 5.9111 -5.8980 -4.5140 15 14 8.4781 -5.4719 -3.5627 16 1 9.0960 -4.4267 -2.7078 17 1 8.6343 -6.7982 -2.9131 18 1 9.1478 -5.4878 -4.8879 19 6 4.4013 -1.1585 -3.3180 20 6 5.8200 -0.6572 -3.2345 21 6 6.7658 -0.8117 -4.1784 22 6 7.9376 -0.1895 -3.6899 23 6 7.6401 0.3009 -2.4731 24 8 6.3561 0.0147 -2.2025 25 8 3.2068 -1.5561 0.7383 26 6 2.0795 -0.8003 1.2004 27 1 1.3102 -1.4734 1.5792 28 6 2.5128 0.1458 2.2904 29 8 3.6780 0.2153 2.6019 30 8 1.6041 0.9112 2.9151 31 1 -0.3633 -1.0258 0.0622 32 1 -0.3634 0.5668 0.8572 33 1 -0.3633 0.4589 -0.9195 34 1 2.2185 -0.1557 -2.0789 35 1 1.4389 -1.6469 -1.4498 36 1 4.0502 -4.5124 -2.9856 37 1 4.4278 -3.5498 -4.4345 38 1 6.3008 -6.6813 -4.9329 39 1 4.1150 -1.2664 -4.3642 40 1 3.7351 -0.4467 -2.8306 41 1 6.6514 -1.3128 -5.1282 42 1 8.8899 -0.1237 -4.1950 43 1 8.3185 0.8346 -1.8240 44 1 1.9297 1.5022 3.6078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607439766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:00 Heat of formation + Delta-G solvation = -169.168374 kcal Electronic energy + Delta-G solvation = -30630.404096 eV Core-core repulsion = 26321.177346 eV Total energy + Delta-G solvation = -4309.226749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.37480 -42.06758 -40.91268 -39.47073 -37.14802 -36.98193 -34.90253 -34.70316 -33.79896 -32.12337 -31.42435 -29.29574 -28.21857 -26.87443 -25.97483 -24.20851 -22.65572 -22.56703 -21.93931 -21.57544 -20.13324 -19.46546 -18.77272 -18.54823 -18.37205 -17.92178 -17.42146 -16.94049 -16.79207 -16.66059 -16.33058 -16.15207 -15.65070 -15.38531 -14.80605 -14.69614 -14.20689 -14.17602 -14.04734 -13.96373 -13.66385 -13.54870 -13.37043 -13.30896 -13.23597 -12.95513 -12.74428 -12.64157 -12.62364 -12.38989 -12.23604 -12.12151 -11.88419 -11.74073 -11.72544 -11.01588 -10.71053 -10.61202 -10.48557 -9.73315 -9.26990 -8.21322 -6.29755 0.80908 1.06092 1.30636 1.34180 1.43909 1.50980 1.68081 1.82669 2.18823 2.25127 2.38533 2.80796 3.09636 3.13833 3.45587 3.66046 3.76408 3.86609 3.94424 4.04985 4.11243 4.24392 4.26326 4.39536 4.42656 4.48434 4.55200 4.73938 4.88292 4.97029 5.00737 5.06302 5.12933 5.16673 5.22157 5.29951 5.43880 5.46609 5.52883 5.63676 5.70645 5.81372 6.09308 6.29951 6.55815 6.76275 6.93624 7.23565 7.40707 8.86463 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.003874 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.640971 B = 7226.576318 C = 7906.350902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.109 0.891 4 C -0.135 4.135 5 C 0.064 3.936 6 H 0.101 0.899 7 C 0.504 3.496 8 O -0.575 6.575 9 N -0.590 5.590 10 C 0.263 3.737 11 C -0.517 4.517 12 H 0.039 0.961 13 C 0.016 3.984 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.183 3.817 20 C -0.046 4.046 21 C -0.188 4.188 22 C -0.230 4.230 23 C -0.047 4.047 24 O -0.192 6.192 25 O -0.361 6.361 26 C 0.078 3.922 27 H 0.138 0.862 28 C 0.475 3.525 29 O -0.545 6.545 30 O -0.495 6.495 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.003 0.997 37 H 0.041 0.959 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.161 0.839 43 H 0.232 0.768 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.353 21.037 4.670 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.127 0.873 4 C -0.172 4.172 5 C 0.003 3.997 6 H 0.118 0.882 7 C 0.291 3.709 8 O -0.454 6.454 9 N -0.322 5.322 10 C 0.142 3.858 11 C -0.556 4.556 12 H 0.058 0.942 13 C -0.182 4.182 14 N -0.565 5.565 15 Si 0.775 3.225 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.191 1.191 19 C 0.061 3.939 20 C -0.096 4.096 21 C -0.209 4.209 22 C -0.249 4.249 23 C -0.114 4.114 24 O -0.089 6.089 25 O -0.279 6.279 26 C 0.019 3.981 27 H 0.156 0.844 28 C 0.317 3.683 29 O -0.435 6.435 30 O -0.309 6.309 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.112 0.888 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.179 0.821 43 H 0.248 0.752 44 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -11.238 20.000 5.033 23.487 hybrid contribution 2.087 -0.628 0.473 2.230 sum -9.151 19.372 5.506 22.121 Atomic orbital electron populations 1.21775 0.89759 1.03429 1.04525 1.22670 0.99870 0.99428 0.89249 0.87294 1.23577 0.91801 1.01814 1.00056 1.23024 1.00982 0.93868 0.81801 0.88164 1.20957 0.77460 0.90424 0.82023 1.90669 1.55609 1.33190 1.65959 1.48189 1.64114 1.08518 1.11381 1.18877 0.94406 0.81335 0.91180 1.21510 0.95054 1.08911 1.30133 0.94241 1.25565 1.01797 0.95751 0.95130 1.70006 1.37039 1.15272 1.34137 0.85648 0.81034 0.77627 0.78232 1.20340 1.21056 1.19110 1.20461 0.88121 0.83597 1.01695 1.23081 0.98776 1.00613 0.87170 1.21744 0.93379 1.03532 1.02206 1.22110 1.00604 1.04515 0.97657 1.24637 0.83545 1.04613 0.98631 1.83953 1.25299 1.58760 1.40838 1.88679 1.49879 1.64938 1.24436 1.22775 0.88874 0.92816 0.93639 0.84436 1.23910 0.83426 0.79106 0.81819 1.90752 1.21871 1.66385 1.64496 1.84447 1.41991 1.52564 1.51920 0.91886 0.90233 0.89424 0.84729 0.88774 0.97907 0.94128 0.92564 0.85071 0.85726 0.83863 0.82101 0.75170 0.70759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.17 71.98 0.66 -0.62 16 2 C -0.09 -1.41 3.11 -9.53 -0.03 -1.44 16 3 H 0.11 1.35 7.85 -2.39 -0.02 1.33 16 4 C -0.14 -2.59 5.45 32.05 0.17 -2.41 16 5 C 0.06 2.05 2.89 30.51 0.09 2.14 16 6 H 0.10 3.14 7.32 -2.39 -0.02 3.12 16 7 C 0.50 22.04 7.02 87.66 0.62 22.65 16 8 O -0.58 -32.15 16.19 15.38 0.25 -31.90 16 9 N -0.59 -24.45 2.45 -830.50 -2.04 -26.49 16 10 C 0.26 13.66 5.16 85.63 0.44 14.10 16 11 C -0.52 -29.85 9.04 25.60 0.23 -29.62 16 12 H 0.04 2.39 7.78 -2.91 -0.02 2.37 16 13 C 0.02 0.95 5.46 84.65 0.46 1.42 16 14 N -0.92 -55.24 13.29 21.45 0.28 -54.96 16 15 Si 0.95 46.63 29.54 68.60 2.03 48.65 16 16 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 17 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 C 0.18 5.42 5.70 85.63 0.49 5.91 16 20 C -0.05 -1.55 6.58 24.83 0.16 -1.39 16 21 C -0.19 -6.54 10.74 22.19 0.24 -6.31 16 22 C -0.23 -7.09 10.91 22.19 0.24 -6.85 16 23 C -0.05 -1.36 12.09 66.97 0.81 -0.55 16 24 O -0.19 -6.44 10.36 -2.46 -0.03 -6.47 16 25 O -0.36 -13.05 9.83 -121.06 -1.19 -14.24 16 26 C 0.08 1.82 3.67 30.32 0.11 1.94 16 27 H 0.14 2.73 7.75 -2.38 -0.02 2.71 16 28 C 0.47 11.14 7.52 71.24 0.54 11.67 16 29 O -0.55 -18.22 17.27 28.36 0.49 -17.73 16 30 O -0.50 -6.66 13.42 -51.43 -0.69 -7.35 16 31 H 0.06 0.65 8.06 -2.38 -0.02 0.63 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.13 1.61 6.35 -2.39 -0.02 1.59 16 35 H 0.09 1.89 7.95 -2.39 -0.02 1.87 16 36 H 0.00 0.17 7.49 -2.38 -0.02 0.15 16 37 H 0.04 2.05 7.95 -2.39 -0.02 2.03 16 38 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.13 3.25 7.97 -2.38 -0.02 3.23 16 40 H 0.13 2.58 4.25 -2.39 -0.01 2.57 16 41 H 0.14 4.98 8.06 -2.91 -0.02 4.95 16 42 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.23 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.43 2.29 9.10 -74.06 -0.67 1.61 16 Total: -1.00 -90.26 376.76 4.71 -85.55 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.37 Total: 14.29 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.23 Total: 10.64 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.75 Total: -81.44 kcal Atomic # 8 Polarization: -76.52 SS G_CDS: -1.17 Total: -77.69 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -90.26 4.71 -85.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607439766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.623 kcal (2) G-P(sol) polarization free energy of solvation -90.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds