Wall clock time and date at job start Tue Mar 31 2020 20:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47471 * 2 1 4 4 N 1.46498 * 109.47259 * 239.99112 * 2 1 3 5 5 C 1.34770 * 119.99988 * 85.00250 * 4 2 1 6 6 O 1.21283 * 120.00104 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00298 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47469 * 180.02562 * 7 5 4 9 9 C 1.76202 * 100.00178 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99504 * 359.97438 * 9 8 7 11 11 C 1.38791 * 120.00213 * 180.02562 * 9 8 7 12 12 N 1.31631 * 119.99765 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00212 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47316 * 89.99963 * 13 11 9 15 15 H 1.48503 * 109.46985 * 209.99989 * 13 11 9 16 16 H 1.48506 * 109.47056 * 329.99575 * 13 11 9 17 17 C 1.53010 * 109.46655 * 119.99203 * 2 1 3 18 18 C 1.53943 * 113.74258 * 281.81839 * 17 2 1 19 19 N 1.47805 * 86.03770 * 222.08504 * 18 17 2 20 20 C 1.34779 * 134.45837 * 204.64224 * 19 18 17 21 21 O 1.21626 * 120.00150 * 179.86907 * 20 19 18 22 22 C 1.47259 * 120.00088 * 359.87130 * 20 19 18 23 23 C 1.46690 * 126.94042 * 359.68315 * 22 20 19 24 24 C 1.34487 * 106.33129 * 179.88584 * 23 22 20 25 25 N 1.36446 * 108.85637 * 0.37916 * 24 23 22 26 26 H 0.96993 * 124.84842 * 179.72494 * 25 24 23 27 27 C 1.34657 * 110.29711 * 359.74554 * 25 24 23 28 28 C 1.47583 * 91.05211 * 24.55171 * 19 18 17 29 29 H 1.09000 * 109.46666 * 60.06874 * 1 2 3 30 30 H 1.08994 * 109.47515 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46872 * 300.07671 * 1 2 3 32 32 H 0.96997 * 120.00099 * 265.00503 * 4 2 1 33 33 H 1.09008 * 109.46934 * 300.00068 * 7 5 4 34 34 H 1.09001 * 109.47330 * 59.99342 * 7 5 4 35 35 H 0.97006 * 119.99815 * 180.02562 * 12 11 9 36 36 H 1.08998 * 112.94018 * 53.41842 * 17 2 1 37 37 H 1.09002 * 113.77396 * 336.35358 * 18 17 2 38 38 H 1.09001 * 113.76436 * 107.75150 * 18 17 2 39 39 H 1.08005 * 126.83344 * 0.02562 * 23 22 20 40 40 H 1.08003 * 125.56869 * 180.15991 * 24 23 22 41 41 H 1.07999 * 125.79613 * 180.02562 * 27 25 24 42 42 H 1.09004 * 113.76881 * 221.14971 * 28 19 18 43 43 H 1.09002 * 113.87061 * 89.76660 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1471 -0.0186 -2.3570 6 8 1.8592 1.1583 -2.4116 7 6 2.6489 -0.7293 -3.5875 8 16 2.7108 0.4338 -4.9730 9 6 3.3139 -0.6316 -6.2403 10 1 3.5231 -1.6680 -6.0201 11 6 3.5211 -0.1387 -7.5211 12 7 3.2665 1.1246 -7.7892 13 14 4.1597 -1.2684 -8.8647 14 1 3.0138 -1.9043 -9.5630 15 1 4.9563 -0.4788 -9.8381 16 1 5.0171 -2.3201 -8.2611 17 6 2.0399 -0.7211 1.2495 18 6 1.9744 0.1332 2.5284 19 7 3.3097 -0.4176 2.8418 20 6 4.0080 -0.6109 3.9783 21 8 5.1198 -1.1020 3.9328 22 6 3.4250 -0.2275 5.2750 23 6 2.1091 0.3783 5.5054 24 6 2.0001 0.5518 6.8346 25 7 3.1441 0.1095 7.4323 26 1 3.3142 0.1300 8.3870 27 6 4.0034 -0.3589 6.5074 28 6 3.5701 -0.6729 1.4118 29 1 -0.3633 0.5128 -0.8906 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 2.2490 -1.6319 -1.1524 33 1 3.6481 -1.1219 -3.3983 34 1 1.9761 -1.5512 -3.8323 35 1 3.4110 1.4690 -8.6845 36 1 1.6175 -1.7191 1.3661 37 1 1.9751 1.2069 2.3401 38 1 1.1953 -0.1773 3.2246 39 1 1.3732 0.6322 4.7567 40 1 1.1478 0.9754 7.3450 41 1 4.9827 -0.7690 6.7052 42 1 4.0627 -1.6258 1.2182 43 1 4.0408 0.1623 0.8932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678607344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:44 Heat of formation + Delta-G solvation = 10.097994 kcal Electronic energy + Delta-G solvation = -25432.173518 eV Core-core repulsion = 21605.765963 eV Total energy + Delta-G solvation = -3826.407554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53324 -40.48674 -39.08406 -37.76758 -34.95281 -32.41188 -31.88183 -31.30969 -29.63633 -28.94287 -28.39809 -26.46544 -25.46815 -24.23556 -22.12690 -21.13910 -20.54605 -20.22295 -19.44202 -18.51834 -17.82216 -16.71277 -16.54641 -16.23222 -15.76017 -15.28580 -14.92997 -14.78635 -14.64521 -14.26468 -14.12577 -13.93943 -13.59255 -13.50305 -13.22462 -13.15475 -12.90859 -12.77042 -12.53284 -12.46657 -12.18155 -11.94831 -11.61793 -11.09031 -11.04808 -11.00268 -10.94008 -10.73742 -10.02501 -9.79399 -9.36829 -9.29213 -9.05497 -8.97519 -8.88701 -8.69404 -8.21821 -6.47970 -6.20079 -3.90357 1.45338 2.02543 2.52191 2.90409 3.01040 3.10906 3.23911 3.28816 3.32474 3.34668 3.65687 4.14964 4.22258 4.33969 4.48723 4.54792 4.72456 4.79118 4.89861 4.93760 5.12665 5.15230 5.17340 5.22127 5.29577 5.32788 5.40382 5.43687 5.46829 5.57240 5.69187 5.80284 5.85302 5.91375 6.02222 6.16595 6.20219 6.29070 6.49611 6.65704 6.98436 7.52667 7.61435 7.72482 8.10047 8.36994 8.63115 9.25478 10.87312 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.001847 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.957111 B =15158.222568 C =15760.047560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.092 0.908 4 N -0.734 5.734 5 C 0.534 3.466 6 O -0.517 6.517 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.133 4.133 18 C 0.113 3.887 19 N -0.640 5.640 20 C 0.612 3.388 21 O -0.554 6.554 22 C -0.230 4.230 23 C -0.173 4.173 24 C -0.019 4.019 25 N -0.554 5.554 26 H 0.418 0.582 27 C 0.075 3.925 28 C 0.116 3.884 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.083 0.917 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 -4.078 31.512 32.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.110 0.890 4 N -0.388 5.388 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.152 4.152 18 C -0.011 4.011 19 N -0.375 5.375 20 C 0.404 3.596 21 O -0.433 6.433 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.146 4.146 25 N -0.149 5.149 26 H 0.255 0.745 27 C -0.062 4.062 28 C -0.006 4.006 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.167 0.833 40 H 0.187 0.813 41 H 0.194 0.806 42 H 0.102 0.898 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.319 -2.227 31.579 32.101 hybrid contribution 0.845 -2.465 -0.350 2.630 sum -4.474 -4.693 31.228 31.894 Atomic orbital electron populations 1.22171 0.94976 1.02203 1.02786 1.20834 0.94296 0.97303 0.82795 0.89002 1.46038 1.69445 1.13977 1.09389 1.20288 0.76728 0.87203 0.83720 1.90700 1.48292 1.15739 1.84380 1.23541 1.03715 1.04853 0.98385 1.85379 1.86304 1.12895 0.98801 1.22872 1.50921 0.98160 0.96402 0.90930 1.24985 0.95112 0.95522 0.97958 1.70020 1.45628 1.13185 1.21470 0.86174 0.78824 0.79978 0.80564 1.20291 1.20768 1.19695 1.23514 0.96302 1.00965 0.94426 1.23359 0.84786 0.98870 0.94041 1.49725 1.18949 1.62979 1.05811 1.17028 0.83319 0.77259 0.81956 1.90787 1.19462 1.46130 1.86950 1.20292 0.97604 1.13688 0.92383 1.22326 0.96951 1.05108 0.95301 1.21843 0.91749 1.07285 0.93752 1.41662 1.14345 1.49184 1.09666 0.74523 1.21840 0.96228 1.00400 0.87752 1.23180 0.95645 1.02567 0.79202 0.91459 0.92441 0.91812 0.76816 0.89207 0.89247 0.92208 0.87402 0.89101 0.89299 0.83338 0.81324 0.80574 0.89816 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.44 37.16 0.35 -1.14 16 2 C 0.15 1.52 2.29 -67.93 -0.16 1.36 16 3 H 0.09 1.08 7.48 -51.93 -0.39 0.69 16 4 N -0.73 -8.79 4.94 -53.81 -0.27 -9.06 16 5 C 0.53 9.40 7.81 -10.99 -0.09 9.31 16 6 O -0.52 -11.15 15.52 5.55 0.09 -11.06 16 7 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 8 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 9 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 13 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 17 C -0.13 -1.00 3.35 -89.69 -0.30 -1.30 16 18 C 0.11 0.79 6.69 -2.84 -0.02 0.78 16 19 N -0.64 -6.69 3.61 -179.50 -0.65 -7.34 16 20 C 0.61 7.83 8.04 -12.59 -0.10 7.72 16 21 O -0.55 -9.10 17.64 5.25 0.09 -9.01 16 22 C -0.23 -2.29 6.28 -103.35 -0.65 -2.94 16 23 C -0.17 -1.26 10.04 -37.50 -0.38 -1.64 16 24 C -0.02 -0.10 11.89 -16.82 -0.20 -0.30 16 25 N -0.55 -2.58 5.90 -12.85 -0.08 -2.66 16 26 H 0.42 0.49 8.96 -40.82 -0.37 0.13 16 27 C 0.07 0.57 11.69 -16.84 -0.20 0.37 16 28 C 0.12 1.15 8.28 -2.96 -0.02 1.12 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.40 3.72 8.60 -40.82 -0.35 3.37 16 33 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 38 H 0.09 0.47 6.26 -51.93 -0.32 0.14 16 39 H 0.15 0.84 5.43 -52.48 -0.28 0.56 16 40 H 0.17 0.35 8.06 -52.48 -0.42 -0.07 16 41 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -39.06 381.26 -8.81 -47.86 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.90 Total: 0.71 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.34 Total: -2.37 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.26 Total: -44.46 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.18 Total: -20.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.06 -8.81 -47.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678607344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.960 kcal (2) G-P(sol) polarization free energy of solvation -39.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds