Wall clock time and date at job start Tue Mar 31 2020 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47518 * 2 1 4 4 N 1.46499 * 109.46980 * 239.99513 * 2 1 3 5 5 C 1.34778 * 119.99707 * 84.99895 * 4 2 1 6 6 O 1.21282 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99956 * 180.02562 * 5 4 2 8 8 S 1.80999 * 109.47277 * 180.02562 * 7 5 4 9 9 C 1.76196 * 99.99990 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00101 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00058 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99636 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00126 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46951 * 60.00498 * 13 11 9 15 15 H 1.48496 * 109.47077 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47548 * 300.00332 * 13 11 9 17 17 C 1.53006 * 109.47167 * 119.99866 * 2 1 3 18 18 C 1.53939 * 113.74108 * 281.82122 * 17 2 1 19 19 N 1.47805 * 86.03724 * 222.08283 * 18 17 2 20 20 C 1.34778 * 134.46024 * 204.64199 * 19 18 17 21 21 O 1.21699 * 120.00398 * 179.86517 * 20 19 18 22 22 C 1.46680 * 119.99759 * 359.86745 * 20 19 18 23 23 C 1.37874 * 126.23327 * 179.68221 * 22 20 19 24 24 C 1.39834 * 107.08639 * 179.84753 * 23 22 20 25 25 C 1.35448 * 107.86367 * 0.42511 * 24 23 22 26 26 N 1.35532 * 108.87419 * 359.73683 * 25 24 23 27 27 H 0.97001 * 125.68202 * 179.97438 * 26 25 24 28 28 C 1.47577 * 91.05009 * 24.55016 * 19 18 17 29 29 H 1.08992 * 109.46860 * 60.06313 * 1 2 3 30 30 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46589 * 300.07055 * 1 2 3 32 32 H 0.97004 * 120.00344 * 265.00168 * 4 2 1 33 33 H 1.09006 * 109.47218 * 300.00443 * 7 5 4 34 34 H 1.09002 * 109.46994 * 60.00020 * 7 5 4 35 35 H 0.96998 * 120.00031 * 180.02562 * 12 11 9 36 36 H 1.09003 * 112.94345 * 53.41102 * 17 2 1 37 37 H 1.09003 * 113.77136 * 336.34862 * 18 17 2 38 38 H 1.09007 * 113.76957 * 107.74114 * 18 17 2 39 39 H 1.08004 * 126.45658 * 359.97438 * 23 22 20 40 40 H 1.07997 * 126.06794 * 180.14118 * 24 23 22 41 41 H 1.08007 * 125.56601 * 179.69956 * 25 24 23 42 42 H 1.09005 * 113.76769 * 221.15035 * 28 19 18 43 43 H 1.09004 * 113.87333 * 89.76815 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4116 7 6 2.6487 -0.7290 -3.5877 8 16 2.7104 0.4341 -4.9731 9 6 3.3134 -0.6312 -6.2404 10 1 3.5219 -1.6678 -6.0206 11 6 3.5195 -0.1384 -7.5216 12 7 3.2649 1.1249 -7.7896 13 14 4.1581 -1.2679 -8.8652 14 1 3.2064 -2.3908 -9.0617 15 1 4.2916 -0.5043 -10.1318 16 1 5.4845 -1.8065 -8.4704 17 6 2.0400 -0.7212 1.2493 18 6 1.9745 0.1330 2.5283 19 7 3.3098 -0.4178 2.8416 20 6 4.0082 -0.6112 3.9780 21 8 5.1207 -1.1026 3.9324 22 6 3.4275 -0.2294 5.2697 23 6 4.0221 -0.3743 6.5052 24 6 3.1223 0.1200 7.4546 25 6 2.0145 0.5400 6.7981 26 7 2.1873 0.3331 5.4698 27 1 1.5439 0.5457 4.7757 28 6 3.5701 -0.6730 1.4116 29 1 -0.3633 0.5128 -0.8905 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8894 32 1 2.2490 -1.6319 -1.1525 33 1 3.6479 -1.1216 -3.3986 34 1 1.9758 -1.5508 -3.8325 35 1 3.4085 1.4693 -8.6849 36 1 1.6176 -1.7193 1.3660 37 1 1.9752 1.2066 2.3401 38 1 1.1953 -0.1775 3.2245 39 1 4.9995 -0.7893 6.7023 40 1 3.2805 0.1559 8.5223 41 1 1.1365 0.9690 7.2580 42 1 4.0628 -1.6259 1.2179 43 1 4.0408 0.1623 0.8930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678608598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:39 Heat of formation + Delta-G solvation = 10.276252 kcal Electronic energy + Delta-G solvation = -25507.375666 eV Core-core repulsion = 21680.975841 eV Total energy + Delta-G solvation = -3826.399824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77415 -40.59873 -39.20394 -38.02074 -35.13098 -32.45204 -31.91330 -31.46033 -30.32251 -28.83884 -28.38110 -26.73921 -25.50993 -24.30943 -22.24503 -21.01487 -20.67617 -20.42520 -20.30163 -18.41570 -17.87841 -16.97572 -16.68847 -16.34815 -15.76337 -15.53469 -15.03284 -14.82473 -14.74477 -14.32580 -14.13796 -14.06854 -13.71325 -13.50287 -13.26965 -13.17171 -13.00976 -12.87237 -12.69520 -12.62276 -12.41195 -12.07917 -11.86073 -11.35381 -11.16804 -11.06947 -11.05387 -10.78729 -10.36585 -9.85052 -9.47745 -9.43752 -9.25294 -9.09241 -9.01466 -8.63518 -8.27809 -6.53111 -6.23965 -3.94872 1.07906 2.23648 2.35085 2.66072 2.90271 3.00783 3.04817 3.22142 3.24768 3.27870 3.54337 3.90564 4.00788 4.18379 4.25052 4.44623 4.55793 4.67044 4.68284 4.88635 4.94607 5.00711 5.05596 5.11148 5.12515 5.16911 5.25693 5.32954 5.43071 5.59365 5.62862 5.66312 5.80369 5.84023 5.86743 6.05639 6.10366 6.30429 6.50765 6.52850 6.91152 7.17851 7.56986 7.60844 7.74944 8.32694 8.52637 9.21445 10.83378 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.028118 B = 0.001860 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.550921 B =15053.627003 C =15654.161389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 H 0.093 0.907 4 N -0.735 5.735 5 C 0.535 3.465 6 O -0.516 6.516 7 C -0.155 4.155 8 S -0.060 6.060 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.127 4.127 18 C 0.101 3.899 19 N -0.649 5.649 20 C 0.610 3.390 21 O -0.526 6.526 22 C -0.052 4.052 23 C -0.107 4.107 24 C -0.211 4.211 25 C 0.020 3.980 26 N -0.542 5.542 27 H 0.414 0.586 28 C 0.118 3.882 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.172 0.828 42 H 0.088 0.912 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -3.827 28.459 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 H 0.111 0.889 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.146 4.146 18 C -0.023 4.023 19 N -0.385 5.385 20 C 0.402 3.598 21 O -0.402 6.402 22 C -0.165 4.165 23 C -0.133 4.133 24 C -0.236 4.236 25 C -0.116 4.116 26 N -0.140 5.140 27 H 0.254 0.746 28 C -0.004 4.004 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.189 0.811 42 H 0.107 0.893 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.569 -1.979 28.225 29.047 hybrid contribution 0.420 -2.362 -1.003 2.600 sum -6.149 -4.340 27.223 28.244 Atomic orbital electron populations 1.22184 0.94871 1.02313 1.02855 1.20821 0.94370 0.97301 0.82764 0.88917 1.46032 1.69571 1.14007 1.09318 1.20316 0.76663 0.87197 0.83695 1.90704 1.48204 1.15738 1.84350 1.23542 1.03733 1.04906 0.98339 1.85378 1.86323 1.12829 0.98783 1.22825 1.51179 0.98121 0.96382 0.90961 1.24989 0.95050 0.95542 0.97954 1.70002 1.45434 1.13212 1.21631 0.86225 0.79337 0.80009 0.79946 1.19941 1.20801 1.19921 1.23464 0.96430 1.00801 0.93940 1.23385 0.84248 0.99576 0.95055 1.49950 1.18823 1.63251 1.06452 1.16725 0.83927 0.78118 0.81074 1.90870 1.18513 1.44932 1.85931 1.20377 0.88726 1.12496 0.94915 1.21367 1.00278 1.01780 0.89920 1.20929 0.94817 1.08035 0.99779 1.22099 1.01389 1.05489 0.82599 1.42368 1.14803 1.48385 1.08451 0.74574 1.23225 0.95624 1.03079 0.78440 0.91247 0.92330 0.91955 0.76740 0.89163 0.89204 0.92111 0.87097 0.88501 0.90264 0.83427 0.83786 0.81108 0.89328 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.44 37.16 0.35 -0.98 16 2 C 0.15 1.34 2.29 -67.93 -0.16 1.18 16 3 H 0.09 0.98 7.48 -51.93 -0.39 0.59 16 4 N -0.73 -8.10 4.94 -53.80 -0.27 -8.36 16 5 C 0.53 9.00 7.81 -10.98 -0.09 8.91 16 6 O -0.52 -10.73 15.52 5.56 0.09 -10.65 16 7 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 9 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 10 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 13 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C -0.13 -0.78 3.35 -89.70 -0.30 -1.08 16 18 C 0.10 0.53 6.84 -2.85 -0.02 0.51 16 19 N -0.65 -5.83 3.61 -179.74 -0.65 -6.47 16 20 C 0.61 7.24 8.02 -12.85 -0.10 7.14 16 21 O -0.53 -8.29 17.61 5.19 0.09 -8.20 16 22 C -0.05 -0.51 7.01 -81.98 -0.57 -1.09 16 23 C -0.11 -1.02 10.65 -39.12 -0.42 -1.44 16 24 C -0.21 -1.51 10.81 -39.98 -0.43 -1.94 16 25 C 0.02 0.11 11.89 -16.91 -0.20 -0.09 16 26 N -0.54 -3.46 5.89 -9.39 -0.06 -3.51 16 27 H 0.41 1.61 5.77 -40.82 -0.24 1.37 16 28 C 0.12 1.00 8.27 -2.97 -0.02 0.98 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.40 3.36 8.60 -40.82 -0.35 3.00 16 33 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 34 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.43 8.03 -51.93 -0.42 0.02 16 38 H 0.08 0.24 6.51 -51.92 -0.34 -0.10 16 39 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.17 0.35 8.06 -52.48 -0.42 -0.07 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -37.84 381.51 -9.01 -46.85 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.92 Total: 0.72 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.54 Total: -3.37 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.24 Total: -43.48 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.84 -9.01 -46.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678608598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.123 kcal (2) G-P(sol) polarization free energy of solvation -37.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds