Wall clock time and date at job start Tue Mar 31 2020 20:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.40916 * 2 1 4 4 C 1.55134 * 110.33919 * 122.43598 * 2 1 3 5 5 C 1.55165 * 101.47893 * 156.06129 * 4 2 1 6 6 H 1.09004 * 110.87276 * 82.77124 * 5 4 2 7 7 N 1.46503 * 110.71562 * 205.96919 * 5 4 2 8 8 C 1.34784 * 119.99603 * 199.97933 * 7 5 4 9 9 O 1.21273 * 119.99919 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99551 * 180.02562 * 8 7 5 11 11 S 1.81000 * 109.46737 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99992 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99867 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99998 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99870 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99701 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47234 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46753 * 120.00094 * 16 14 12 19 19 H 1.48502 * 109.46993 * 239.99891 * 16 14 12 20 20 C 1.54322 * 102.94599 * 324.33037 * 5 4 2 21 21 N 1.47025 * 107.26875 * 22.19735 * 20 5 4 22 22 C 1.34773 * 125.64881 * 181.02597 * 21 20 5 23 23 O 1.21623 * 120.00059 * 180.02562 * 22 21 20 24 24 C 1.47259 * 119.99960 * 0.02562 * 22 21 20 25 25 C 1.46694 * 126.94422 * 0.02562 * 24 22 21 26 26 C 1.34488 * 106.33416 * 179.76726 * 25 24 22 27 27 N 1.36445 * 108.85633 * 0.36811 * 26 25 24 28 28 H 0.97001 * 124.85288 * 179.88691 * 27 26 25 29 29 C 1.34663 * 110.29745 * 359.61090 * 27 26 25 30 30 H 1.09006 * 109.47270 * 180.84755 * 1 2 3 31 31 H 1.08997 * 109.47413 * 300.84436 * 1 2 3 32 32 H 1.09002 * 109.47211 * 60.84635 * 1 2 3 33 33 H 1.08993 * 111.19510 * 37.96139 * 4 2 1 34 34 H 1.08996 * 110.90471 * 274.03682 * 4 2 1 35 35 H 0.96993 * 120.00379 * 19.97407 * 7 5 4 36 36 H 1.08994 * 109.47341 * 299.99987 * 10 8 7 37 37 H 1.08999 * 109.47224 * 59.99877 * 10 8 7 38 38 H 0.97004 * 119.99262 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.88701 * 262.77776 * 20 5 4 40 40 H 1.09001 * 110.00710 * 141.68145 * 20 5 4 41 41 H 1.07998 * 126.82941 * 359.97438 * 25 24 22 42 42 H 1.07993 * 125.56835 * 180.21127 * 26 25 24 43 43 H 1.07998 * 125.79995 * 180.22688 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7802 1.2277 5 6 3.4797 -1.1971 0.7334 6 1 4.1953 -0.3869 0.8730 7 7 3.9320 -2.4096 1.4201 8 6 5.2443 -2.7155 1.4533 9 8 6.0504 -1.9873 0.9144 10 6 5.7095 -3.9631 2.1592 11 16 7.5099 -4.0945 2.0282 12 6 7.7722 -5.5962 2.9119 13 1 6.9324 -6.1282 3.3338 14 6 9.0582 -6.0953 3.0658 15 7 10.0818 -5.4466 2.5520 16 14 9.3362 -7.6870 4.0033 17 1 8.0323 -8.2164 4.4776 18 1 9.9782 -8.6829 3.1082 19 1 10.2191 -7.4272 5.1687 20 6 3.2525 -1.4725 -0.7679 21 7 2.0431 -0.7385 -1.1682 22 6 1.4972 -0.7365 -2.4004 23 8 0.4909 -0.0892 -2.6187 24 6 2.1191 -1.5181 -3.4825 25 6 3.3254 -2.3477 -3.3899 26 6 3.5174 -2.8739 -4.6125 27 7 2.5325 -2.4271 -5.4445 28 1 2.4496 -2.6625 -6.3819 29 6 1.6887 -1.6174 -4.7769 30 1 -0.3634 -1.0276 0.0152 31 1 -0.3634 0.5269 0.8823 32 1 -0.3634 0.5006 -0.8975 33 1 1.4549 -1.6553 1.4393 34 1 2.1372 -0.1319 2.1013 35 1 3.2872 -2.9922 1.8509 36 1 5.4239 -3.9140 3.2099 37 1 5.2473 -4.8356 1.6975 38 1 10.9805 -5.7953 2.6599 39 1 3.1090 -2.5406 -0.9314 40 1 4.1076 -1.1209 -1.3452 41 1 3.9357 -2.5071 -2.5132 42 1 4.3212 -3.5392 -4.8910 43 1 0.8198 -1.1292 -5.1929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680540945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:02 Heat of formation + Delta-G solvation = -13.599404 kcal Electronic energy + Delta-G solvation = -26239.867446 eV Core-core repulsion = 22412.432295 eV Total energy + Delta-G solvation = -3827.435151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38831 -40.22633 -39.00745 -37.29116 -34.14330 -32.66882 -32.45073 -30.68394 -30.53410 -29.32078 -28.42499 -26.07475 -25.50856 -23.98122 -22.04178 -21.26288 -20.54697 -20.24020 -19.24664 -18.16062 -17.86587 -16.98012 -16.36147 -16.23847 -15.63097 -15.12123 -14.95246 -14.82427 -14.44002 -14.02023 -14.00814 -13.94535 -13.73917 -13.60294 -13.22038 -13.10793 -12.67769 -12.55196 -12.42032 -12.33577 -12.12700 -11.96999 -11.48782 -11.27867 -11.09016 -11.05197 -11.01831 -10.76836 -9.82917 -9.74152 -9.47471 -9.10399 -9.05992 -9.00773 -8.79890 -8.49267 -8.26118 -6.52487 -6.24180 -3.94644 1.60096 2.26832 2.70165 2.97151 2.99832 3.14979 3.19949 3.27280 3.31732 3.46087 3.67712 4.17886 4.20753 4.37249 4.73098 4.75895 4.84004 4.95797 5.00376 5.06499 5.11389 5.13706 5.20696 5.25067 5.40594 5.54609 5.55788 5.58727 5.68064 5.68605 5.79044 5.85442 5.88916 5.96376 6.11102 6.11223 6.38911 6.52038 6.54225 6.71401 7.18630 7.46436 7.57772 7.62488 8.21435 8.33214 8.53291 9.21616 10.83233 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.002521 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.914949 B =11103.187182 C =12486.910966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 H 0.079 0.921 4 C -0.136 4.136 5 C 0.136 3.864 6 H 0.105 0.895 7 N -0.730 5.730 8 C 0.533 3.467 9 O -0.513 6.513 10 C -0.154 4.154 11 S -0.059 6.059 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.918 3.082 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.088 3.912 21 N -0.609 5.609 22 C 0.611 3.389 23 O -0.554 6.554 24 C -0.235 4.235 25 C -0.175 4.175 26 C -0.017 4.017 27 N -0.554 5.554 28 H 0.417 0.583 29 C 0.074 3.926 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.473 7.193 -10.843 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.030 3.970 6 H 0.123 0.877 7 N -0.384 5.384 8 C 0.320 3.680 9 O -0.387 6.387 10 C -0.305 4.305 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.037 4.037 21 N -0.343 5.343 22 C 0.403 3.597 23 O -0.434 6.434 24 C -0.245 4.245 25 C -0.199 4.199 26 C -0.145 4.145 27 N -0.148 5.148 28 H 0.254 0.746 29 C -0.063 4.063 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.174 0.826 42 H 0.188 0.812 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.447 8.704 -12.070 23.701 hybrid contribution -0.870 -2.409 1.042 2.766 sum -19.318 6.295 -11.028 23.117 Atomic orbital electron populations 1.22168 0.93585 1.02697 1.03672 1.21894 0.95466 0.95523 0.83636 0.90299 1.23224 0.95149 1.01266 0.97839 1.21874 0.95942 0.88878 0.90354 0.87685 1.45992 1.08261 1.26029 1.58125 1.20376 0.81419 0.86794 0.79452 1.90712 1.53008 1.50707 1.44252 1.23538 1.07163 0.97104 1.02670 1.85397 0.92680 1.32289 1.72914 1.22904 0.95739 1.09372 1.40302 0.90875 1.24991 0.94984 0.97995 0.95624 1.70027 0.99127 1.38429 1.42674 0.86122 0.78379 0.81755 0.79272 1.19612 1.20585 1.20566 1.22823 0.87583 0.97363 0.95889 1.48210 1.28057 1.48885 1.09148 1.16986 0.82509 0.79921 0.80278 1.90691 1.25580 1.45065 1.82075 1.20296 1.01351 1.08753 0.94098 1.22698 0.98275 1.00800 0.98133 1.21927 0.96182 1.05401 0.90971 1.41685 1.22508 1.38274 1.12365 0.74648 1.21773 0.96365 0.96248 0.91957 0.92694 0.92124 0.89278 0.89798 0.89034 0.76474 0.89144 0.89141 0.92233 0.90369 0.90053 0.82640 0.81172 0.80709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.71 37.16 0.32 -1.26 16 2 C 0.14 1.35 3.78 -66.30 -0.25 1.10 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.14 -1.11 6.12 -24.46 -0.15 -1.26 16 5 C 0.14 1.47 3.23 -66.09 -0.21 1.25 16 6 H 0.11 1.29 7.69 -51.93 -0.40 0.89 16 7 N -0.73 -8.63 5.13 -52.02 -0.27 -8.90 16 8 C 0.53 9.08 7.84 -10.98 -0.09 8.99 16 9 O -0.51 -10.73 15.59 5.56 0.09 -10.65 16 10 C -0.15 -2.92 6.16 36.01 0.22 -2.69 16 11 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 12 C -0.53 -14.86 9.50 30.94 0.29 -14.57 16 13 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 14 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 16 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.09 0.99 4.74 -3.06 -0.01 0.98 16 21 N -0.61 -7.05 3.24 -164.23 -0.53 -7.59 16 22 C 0.61 8.12 7.62 -12.60 -0.10 8.02 16 23 O -0.55 -8.43 14.56 5.26 0.08 -8.35 16 24 C -0.23 -2.78 6.23 -103.35 -0.64 -3.42 16 25 C -0.18 -1.93 9.39 -37.49 -0.35 -2.28 16 26 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 27 N -0.55 -3.90 5.90 -12.85 -0.08 -3.98 16 28 H 0.42 1.43 8.96 -40.82 -0.37 1.07 16 29 C 0.07 0.68 11.69 -16.84 -0.20 0.48 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 33 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.40 3.65 8.52 -40.82 -0.35 3.30 16 36 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 37 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.08 0.89 6.73 -51.93 -0.35 0.54 16 40 H 0.08 1.01 7.00 -51.93 -0.36 0.65 16 41 H 0.16 1.76 4.79 -52.49 -0.25 1.51 16 42 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -36.28 370.06 -8.82 -45.09 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.72 Total: 4.56 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.46 Total: -3.05 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.14 Total: -45.41 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.16 Total: -19.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.28 -8.82 -45.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680540945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.493 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds