Wall clock time and date at job start Tue Mar 31 2020 20:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.40916 * 2 1 4 4 C 1.55134 * 110.33919 * 122.43598 * 2 1 3 5 5 C 1.55165 * 101.47893 * 156.06129 * 4 2 1 6 6 H 1.09004 * 110.87276 * 82.77124 * 5 4 2 7 7 N 1.46503 * 110.71562 * 205.96919 * 5 4 2 8 8 C 1.34784 * 119.99603 * 199.97933 * 7 5 4 9 9 O 1.21273 * 119.99919 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99551 * 180.02562 * 8 7 5 11 11 S 1.81000 * 109.46737 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99992 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99867 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99998 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99870 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99701 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47234 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46753 * 120.00094 * 16 14 12 19 19 H 1.48502 * 109.46993 * 239.99891 * 16 14 12 20 20 C 1.54322 * 102.94599 * 324.33037 * 5 4 2 21 21 N 1.47025 * 107.26875 * 22.19735 * 20 5 4 22 22 C 1.34773 * 125.64881 * 181.02597 * 21 20 5 23 23 O 1.21623 * 120.00059 * 180.02562 * 22 21 20 24 24 C 1.47259 * 119.99960 * 0.02562 * 22 21 20 25 25 C 1.46694 * 126.94422 * 0.02562 * 24 22 21 26 26 C 1.34488 * 106.33416 * 179.76726 * 25 24 22 27 27 N 1.36445 * 108.85633 * 0.36811 * 26 25 24 28 28 H 0.97001 * 124.85288 * 179.88691 * 27 26 25 29 29 C 1.34663 * 110.29745 * 359.61090 * 27 26 25 30 30 H 1.09006 * 109.47270 * 180.84755 * 1 2 3 31 31 H 1.08997 * 109.47413 * 300.84436 * 1 2 3 32 32 H 1.09002 * 109.47211 * 60.84635 * 1 2 3 33 33 H 1.08993 * 111.19510 * 37.96139 * 4 2 1 34 34 H 1.08996 * 110.90471 * 274.03682 * 4 2 1 35 35 H 0.96993 * 120.00379 * 19.97407 * 7 5 4 36 36 H 1.08994 * 109.47341 * 299.99987 * 10 8 7 37 37 H 1.08999 * 109.47224 * 59.99877 * 10 8 7 38 38 H 0.97004 * 119.99262 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.88701 * 262.77776 * 20 5 4 40 40 H 1.09001 * 110.00710 * 141.68145 * 20 5 4 41 41 H 1.07998 * 126.82941 * 359.97438 * 25 24 22 42 42 H 1.07993 * 125.56835 * 180.21127 * 26 25 24 43 43 H 1.07998 * 125.79995 * 180.22688 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7802 1.2277 5 6 3.4797 -1.1971 0.7334 6 1 4.1953 -0.3869 0.8730 7 7 3.9320 -2.4096 1.4201 8 6 5.2443 -2.7155 1.4533 9 8 6.0504 -1.9873 0.9144 10 6 5.7095 -3.9631 2.1592 11 16 7.5099 -4.0945 2.0282 12 6 7.7722 -5.5962 2.9119 13 1 6.9324 -6.1282 3.3338 14 6 9.0582 -6.0953 3.0658 15 7 10.0818 -5.4466 2.5520 16 14 9.3362 -7.6870 4.0033 17 1 8.0323 -8.2164 4.4776 18 1 9.9782 -8.6829 3.1082 19 1 10.2191 -7.4272 5.1687 20 6 3.2525 -1.4725 -0.7679 21 7 2.0431 -0.7385 -1.1682 22 6 1.4972 -0.7365 -2.4004 23 8 0.4909 -0.0892 -2.6187 24 6 2.1191 -1.5181 -3.4825 25 6 3.3254 -2.3477 -3.3899 26 6 3.5174 -2.8739 -4.6125 27 7 2.5325 -2.4271 -5.4445 28 1 2.4496 -2.6625 -6.3819 29 6 1.6887 -1.6174 -4.7769 30 1 -0.3634 -1.0276 0.0152 31 1 -0.3634 0.5269 0.8823 32 1 -0.3634 0.5006 -0.8975 33 1 1.4549 -1.6553 1.4393 34 1 2.1372 -0.1319 2.1013 35 1 3.2872 -2.9922 1.8509 36 1 5.4239 -3.9140 3.2099 37 1 5.2473 -4.8356 1.6975 38 1 10.9805 -5.7953 2.6599 39 1 3.1090 -2.5406 -0.9314 40 1 4.1076 -1.1209 -1.3452 41 1 3.9357 -2.5071 -2.5132 42 1 4.3212 -3.5392 -4.8910 43 1 0.8198 -1.1292 -5.1929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680540945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:01 Heat of formation + Delta-G solvation = -39.689034 kcal Electronic energy + Delta-G solvation = -26240.998777 eV Core-core repulsion = 22412.432295 eV Total energy + Delta-G solvation = -3828.566482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15869 -41.18897 -40.21668 -38.33797 -35.31415 -34.55260 -33.49160 -31.89992 -31.30110 -30.08254 -29.67988 -27.62533 -26.90870 -24.86490 -23.01848 -22.13547 -21.44754 -21.28168 -20.01522 -19.79591 -18.95881 -18.04582 -17.52328 -17.40411 -16.85217 -16.65276 -16.26151 -16.11364 -15.76338 -15.23183 -14.90131 -14.75305 -14.67044 -14.57169 -14.47077 -14.34210 -13.93970 -13.62491 -13.38930 -13.18486 -13.12443 -13.07408 -12.90999 -12.89280 -12.59475 -12.38366 -12.11460 -11.87337 -11.66473 -11.13231 -10.92162 -10.71648 -10.22405 -10.14321 -9.86303 -9.68283 -9.26645 -8.61839 -8.32141 -6.08776 0.76523 1.29399 1.43060 1.48883 1.51524 1.59222 1.62704 1.90951 2.27983 2.32247 2.48905 2.55114 3.02355 3.31911 3.41021 3.50673 3.94197 3.98213 4.02929 4.10062 4.14053 4.24118 4.36908 4.37899 4.40269 4.49417 4.57565 4.62034 4.73155 4.78293 4.90448 4.95129 4.95979 5.04230 5.17580 5.31098 5.45529 5.46689 5.56936 5.73310 5.95462 6.23071 6.50501 6.52279 6.66473 7.09982 7.24763 7.27333 8.77044 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.002521 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.914949 B =11103.187182 C =12486.910966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.080 0.920 4 C -0.118 4.118 5 C 0.136 3.864 6 H 0.091 0.909 7 N -0.701 5.701 8 C 0.538 3.462 9 O -0.558 6.558 10 C -0.131 4.131 11 S -0.148 6.148 12 C -0.544 4.544 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.996 3.004 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.275 1.275 20 C 0.097 3.903 21 N -0.609 5.609 22 C 0.602 3.398 23 O -0.582 6.582 24 C -0.271 4.271 25 C -0.203 4.203 26 C -0.009 4.009 27 N -0.535 5.535 28 H 0.437 0.563 29 C 0.081 3.919 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.419 0.581 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.270 0.730 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.145 0.855 42 H 0.196 0.804 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.345 5.838 -10.273 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.098 0.902 4 C -0.156 4.156 5 C 0.030 3.970 6 H 0.109 0.891 7 N -0.356 5.356 8 C 0.324 3.676 9 O -0.435 6.435 10 C -0.282 4.282 11 S 0.079 5.921 12 C -0.692 4.692 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.818 3.182 17 H -0.180 1.180 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.028 4.028 21 N -0.342 5.342 22 C 0.395 3.605 23 O -0.465 6.465 24 C -0.281 4.281 25 C -0.226 4.226 26 C -0.137 4.137 27 N -0.131 5.131 28 H 0.277 0.723 29 C -0.057 4.057 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.257 0.743 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.162 0.838 42 H 0.212 0.788 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.371 7.334 -11.503 24.517 hybrid contribution -0.388 -1.921 0.777 2.108 sum -20.760 5.413 -10.726 23.985 Atomic orbital electron populations 1.22059 0.93205 1.02408 1.03547 1.22098 0.95781 0.95788 0.83639 0.90207 1.23195 0.92787 1.02007 0.97640 1.21906 0.97269 0.87718 0.90129 0.89060 1.45655 1.06656 1.26334 1.56934 1.20058 0.82690 0.85833 0.78972 1.90710 1.54630 1.51893 1.46307 1.23380 1.01258 0.99030 1.04520 1.85566 1.00247 1.32855 1.73453 1.23237 0.96355 1.09469 1.40104 0.89935 1.26089 0.94649 1.01870 0.96531 1.70187 0.99699 1.40539 1.44333 0.84939 0.78795 0.76786 0.77639 1.18025 1.20062 1.20100 1.22660 0.86999 0.97209 0.95909 1.48263 1.27857 1.48730 1.09368 1.17314 0.82340 0.79843 0.80993 1.90668 1.26771 1.46404 1.82619 1.20441 1.02487 1.10184 0.94979 1.22696 0.98644 1.02206 0.99053 1.22271 0.96467 1.04624 0.90349 1.41676 1.21310 1.36940 1.13163 0.72309 1.22038 0.96623 0.95721 0.91333 0.93065 0.89684 0.91825 0.88155 0.86732 0.74284 0.87099 0.87119 0.92076 0.90385 0.91790 0.83755 0.78751 0.79051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.71 71.98 0.63 -2.17 16 2 C 0.13 2.39 3.78 45.55 0.17 2.56 16 3 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.12 -1.62 6.12 32.07 0.20 -1.42 16 5 C 0.14 2.77 3.23 46.18 0.15 2.92 16 6 H 0.09 2.21 7.69 -2.39 -0.02 2.19 16 7 N -0.70 -15.24 5.13 -436.89 -2.24 -17.48 16 8 C 0.54 17.92 7.84 87.66 0.69 18.61 16 9 O -0.56 -23.80 15.59 -3.01 -0.05 -23.84 16 10 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 11 S -0.15 -7.91 20.57 -56.49 -1.16 -9.08 16 12 C -0.54 -30.16 9.50 67.95 0.65 -29.52 16 13 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 14 C 0.01 0.74 5.49 84.86 0.47 1.21 16 15 N -0.91 -54.95 13.22 21.65 0.29 -54.66 16 16 Si 1.00 42.73 29.55 68.60 2.03 44.76 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 20 C 0.10 2.19 4.74 86.73 0.41 2.60 16 21 N -0.61 -14.12 3.24 -791.76 -2.57 -16.69 16 22 C 0.60 16.31 7.62 86.62 0.66 16.97 16 23 O -0.58 -18.11 14.56 -4.10 -0.06 -18.17 16 24 C -0.27 -6.45 6.23 -19.04 -0.12 -6.57 16 25 C -0.20 -4.49 9.39 23.62 0.22 -4.27 16 26 C -0.01 -0.14 11.89 83.12 0.99 0.85 16 27 N -0.54 -6.58 5.90 -194.56 -1.15 -7.73 16 28 H 0.44 1.92 8.96 -92.71 -0.83 1.09 16 29 C 0.08 1.43 11.69 83.91 0.98 2.42 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 33 H 0.10 1.11 7.93 -2.39 -0.02 1.09 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.42 6.24 8.52 -92.71 -0.79 5.45 16 36 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 37 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 38 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 39 H 0.08 1.77 6.73 -2.39 -0.02 1.75 16 40 H 0.06 1.68 7.00 -2.39 -0.02 1.66 16 41 H 0.14 3.42 4.79 -2.91 -0.01 3.41 16 42 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -82.09 370.06 1.06 -81.03 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.56 Total: 22.03 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 6.53 Total: -0.17 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -5.67 Total: -96.56 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.11 Total: -42.01 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.08 kcal Total: -82.09 1.06 -81.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680540945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.338 kcal (2) G-P(sol) polarization free energy of solvation -82.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds