Wall clock time and date at job start Tue Mar 31 2020 20:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.99540 * 2 1 4 4 C 1.54317 * 109.88959 * 121.10101 * 2 1 3 5 5 C 1.55155 * 102.94592 * 141.61030 * 4 2 1 6 6 H 1.09004 * 111.00432 * 206.42830 * 5 4 2 7 7 N 1.46496 * 111.00318 * 82.61136 * 5 4 2 8 8 C 1.34781 * 119.99910 * 155.00246 * 7 5 4 9 9 O 1.21277 * 120.00100 * 359.97438 * 8 7 5 10 10 C 1.50704 * 119.99739 * 180.02562 * 8 7 5 11 11 S 1.81003 * 109.46833 * 179.97438 * 10 8 7 12 12 C 1.76200 * 99.99949 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00131 * 0.02562 * 12 11 10 14 14 C 1.38800 * 119.99697 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00227 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99595 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46921 * 59.99974 * 16 14 12 18 18 H 1.48501 * 109.46881 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47204 * 299.99765 * 16 14 12 20 20 C 1.55134 * 101.48516 * 324.33402 * 5 4 2 21 21 N 1.47024 * 109.88150 * 238.91518 * 2 1 3 22 22 C 1.34770 * 125.65379 * 61.59754 * 21 2 1 23 23 O 1.21632 * 119.99990 * 358.17871 * 22 21 2 24 24 C 1.47262 * 120.00091 * 178.45172 * 22 21 2 25 25 C 1.46684 * 126.94464 * 7.56730 * 24 22 21 26 26 C 1.34483 * 106.33231 * 179.83154 * 25 24 22 27 27 N 1.36450 * 108.86008 * 0.43237 * 26 25 24 28 28 H 0.96993 * 124.84996 * 179.68277 * 27 26 25 29 29 C 1.34661 * 110.29237 * 359.71676 * 27 26 25 30 30 H 1.09007 * 109.47074 * 179.64115 * 1 2 3 31 31 H 1.09004 * 109.47446 * 299.63509 * 1 2 3 32 32 H 1.08997 * 109.47820 * 59.64013 * 1 2 3 33 33 H 1.08998 * 110.72081 * 259.97771 * 4 2 1 34 34 H 1.09007 * 110.71710 * 23.06713 * 4 2 1 35 35 H 0.96999 * 119.99992 * 335.00332 * 7 5 4 36 36 H 1.09000 * 109.47060 * 299.99538 * 10 8 7 37 37 H 1.08997 * 109.47503 * 60.00019 * 10 8 7 38 38 H 0.97000 * 119.99604 * 180.02562 * 15 14 12 39 39 H 1.08997 * 110.49655 * 278.45595 * 20 5 4 40 40 H 1.08998 * 110.33992 * 156.05730 * 20 5 4 41 41 H 1.08002 * 126.83210 * 359.97438 * 25 24 22 42 42 H 1.08000 * 125.57072 * 180.14970 * 26 25 24 43 43 H 1.08003 * 125.79811 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2425 5 6 3.2877 -1.5142 0.6921 6 1 3.4853 -2.4111 1.2792 7 7 4.4676 -0.6469 0.6499 8 6 5.7021 -1.1858 0.6984 9 8 5.8360 -2.3885 0.7775 10 6 6.9159 -0.2936 0.6557 11 16 8.4130 -1.3074 0.7382 12 6 9.6411 -0.0456 0.6711 13 1 9.3468 0.9911 0.6014 14 6 10.9866 -0.3842 0.7079 15 7 11.3453 -1.6478 0.7934 16 14 12.2885 0.9536 0.6375 17 1 12.1178 1.8716 1.7922 18 1 13.6374 0.3349 0.6928 19 1 12.1453 1.7176 -0.6277 20 6 2.8099 -1.8824 -0.7372 21 7 2.0299 -0.7138 -1.1841 22 6 1.8072 -0.3618 -2.4658 23 8 1.1136 0.6047 -2.7193 24 6 2.3987 -1.1507 -3.5595 25 6 3.1187 -2.4231 -3.4394 26 6 3.4733 -2.7763 -4.6876 27 7 3.0373 -1.8195 -5.5574 28 1 3.1727 -1.8403 -6.5176 29 6 2.3930 -0.8421 -4.8919 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3634 0.5082 0.8932 32 1 -0.3634 0.5194 -0.8867 33 1 2.3530 -0.0461 2.0199 34 1 1.3040 -1.4438 1.6199 35 1 4.3605 0.3151 0.5871 36 1 6.9143 0.2778 -0.2726 37 1 6.8938 0.3909 1.5037 38 1 12.2856 -1.8843 0.8194 39 1 2.1801 -2.7716 -0.7118 40 1 3.6655 -2.0409 -1.3936 41 1 3.3214 -2.9689 -2.5298 42 1 4.0184 -3.6688 -4.9571 43 1 1.9476 0.0364 -5.3351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680540948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:04 Heat of formation + Delta-G solvation = -13.209710 kcal Electronic energy + Delta-G solvation = -26576.372376 eV Core-core repulsion = 22748.954124 eV Total energy + Delta-G solvation = -3827.418252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36800 -40.25265 -38.87835 -37.30616 -33.91013 -32.62109 -32.43112 -30.70540 -30.53279 -29.29835 -28.42518 -26.17516 -25.48523 -24.03285 -22.06656 -21.00763 -20.68504 -20.17184 -19.23661 -18.20723 -17.85568 -16.92956 -16.44817 -16.02167 -15.42351 -15.15506 -14.89158 -14.80471 -14.50847 -14.08670 -14.00649 -13.94383 -13.72618 -13.37860 -13.26091 -12.96513 -12.83152 -12.60755 -12.42266 -12.20152 -12.15240 -11.89797 -11.49726 -11.20394 -11.04973 -11.04030 -10.92410 -10.76242 -9.90517 -9.82623 -9.44288 -9.09951 -9.04766 -9.02199 -8.69102 -8.43923 -8.24915 -6.50082 -6.22033 -3.92342 1.65144 2.29093 2.81416 3.00140 3.04427 3.16033 3.23438 3.27207 3.30590 3.48994 3.69852 4.20126 4.21327 4.37284 4.72499 4.75802 4.88199 4.98113 5.03959 5.11186 5.13230 5.17388 5.24862 5.27562 5.37987 5.48919 5.54534 5.57967 5.67472 5.69464 5.79885 5.84145 5.89575 5.93395 6.08145 6.15070 6.33821 6.53949 6.61303 6.73849 7.22218 7.49587 7.59276 7.67744 8.24680 8.34898 8.57600 9.23473 10.85314 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.002902 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.203851 B = 9646.532090 C =10836.031995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.132 3.868 6 H 0.113 0.887 7 N -0.727 5.727 8 C 0.536 3.464 9 O -0.516 6.516 10 C -0.154 4.154 11 S -0.058 6.058 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.077 3.923 21 N -0.607 5.607 22 C 0.610 3.390 23 O -0.556 6.556 24 C -0.233 4.233 25 C -0.178 4.178 26 C -0.016 4.016 27 N -0.553 5.553 28 H 0.417 0.583 29 C 0.074 3.926 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.157 0.843 42 H 0.170 0.830 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.870 0.178 -7.331 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.026 3.974 6 H 0.131 0.869 7 N -0.380 5.380 8 C 0.322 3.678 9 O -0.391 6.391 10 C -0.305 4.305 11 S 0.169 5.831 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.047 4.047 21 N -0.340 5.340 22 C 0.402 3.598 23 O -0.436 6.436 24 C -0.243 4.243 25 C -0.202 4.202 26 C -0.143 4.143 27 N -0.148 5.148 28 H 0.254 0.746 29 C -0.063 4.063 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.175 0.825 42 H 0.188 0.812 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.829 -1.475 -7.514 23.133 hybrid contribution 0.792 2.648 -0.615 2.832 sum -21.037 1.173 -8.129 22.584 Atomic orbital electron populations 1.22134 0.94624 1.02273 1.02915 1.21542 0.94753 0.96342 0.84261 0.90643 1.23094 0.97146 1.00346 0.96905 1.22028 0.84763 0.95231 0.95393 0.86891 1.45913 1.04842 1.10138 1.77138 1.20315 0.83612 0.89094 0.74766 1.90695 1.85930 1.15003 1.47430 1.23536 0.98838 1.03155 1.04945 1.85339 0.91606 1.09863 1.96332 1.22835 0.92728 0.94155 1.58742 0.91003 1.24977 0.97823 0.96169 0.94522 1.70005 1.17527 1.16115 1.46685 0.86240 0.79659 0.80871 0.78832 1.19920 1.20811 1.19951 1.23349 0.96272 0.88578 0.96538 1.48250 1.52771 1.28346 1.04650 1.17002 0.79275 0.82973 0.80581 1.90744 1.40167 1.29171 1.83510 1.20260 1.11666 0.99588 0.92771 1.22662 1.03080 0.96942 0.97480 1.21911 1.06315 0.96402 0.89692 1.41673 1.44555 1.18470 1.10078 0.74623 1.21773 0.98676 0.94178 0.91705 0.92524 0.91824 0.91071 0.89177 0.88922 0.76712 0.89275 0.89223 0.92142 0.90403 0.88203 0.82530 0.81228 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.10 37.15 0.34 -1.14 16 2 C 0.13 1.30 3.46 -66.96 -0.23 1.07 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.14 -1.07 6.07 -24.90 -0.15 -1.22 16 5 C 0.13 1.40 3.43 -65.66 -0.23 1.17 16 6 H 0.11 1.28 7.54 -51.93 -0.39 0.89 16 7 N -0.73 -9.21 5.20 -51.61 -0.27 -9.48 16 8 C 0.54 9.46 7.85 -10.98 -0.09 9.37 16 9 O -0.52 -10.90 15.50 5.56 0.09 -10.81 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 12 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 13 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 16 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.08 0.81 5.04 -2.40 -0.01 0.80 16 21 N -0.61 -6.95 3.06 -164.19 -0.50 -7.46 16 22 C 0.61 8.36 7.64 -12.60 -0.10 8.26 16 23 O -0.56 -8.97 15.89 5.25 0.08 -8.89 16 24 C -0.23 -2.86 6.20 -103.35 -0.64 -3.50 16 25 C -0.18 -1.96 9.28 -37.50 -0.35 -2.31 16 26 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 27 N -0.55 -4.23 5.90 -12.84 -0.08 -4.31 16 28 H 0.42 1.72 8.96 -40.82 -0.37 1.35 16 29 C 0.07 0.73 11.70 -16.84 -0.20 0.54 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.82 6.82 -51.93 -0.35 0.47 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.59 7.85 -51.92 -0.41 0.19 16 35 H 0.40 4.34 8.67 -40.82 -0.35 3.98 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.10 1.23 5.15 -51.93 -0.27 0.96 16 41 H 0.16 1.64 5.07 -52.49 -0.27 1.38 16 42 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -36.95 372.26 -8.75 -45.70 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.75 Total: 5.31 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.43 Total: -3.00 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.11 Total: -46.46 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.17 Total: -19.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.95 -8.75 -45.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680540948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.488 kcal (2) G-P(sol) polarization free energy of solvation -36.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds