Wall clock time and date at job start Tue Mar 31 2020 20:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.41649 * 2 1 4 4 C 1.54907 * 110.36657 * 237.70634 * 2 1 3 5 5 C 1.55155 * 101.58383 * 204.15344 * 4 2 1 6 6 H 1.08998 * 110.71769 * 277.13840 * 5 4 2 7 7 N 1.46495 * 110.72438 * 153.86514 * 5 4 2 8 8 C 1.34778 * 120.00419 * 160.02675 * 7 5 4 9 9 O 1.21279 * 119.99538 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00038 * 179.97438 * 8 7 5 11 11 S 1.80998 * 109.46867 * 179.97438 * 10 8 7 12 12 C 1.76198 * 100.00036 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99907 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00204 * 180.02562 * 12 11 10 15 15 N 1.31630 * 119.99604 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00004 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47212 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46812 * 119.99959 * 16 14 12 19 19 H 1.48495 * 109.47233 * 240.00069 * 16 14 12 20 20 C 1.54330 * 102.94292 * 35.49718 * 5 4 2 21 21 N 1.47026 * 107.26840 * 337.81024 * 20 5 4 22 22 C 1.34775 * 125.64519 * 178.90227 * 21 20 5 23 23 O 1.21627 * 120.00284 * 180.02562 * 22 21 20 24 24 C 1.47266 * 119.99941 * 0.02785 * 22 21 20 25 25 C 1.46692 * 126.93879 * 179.97438 * 24 22 21 26 26 C 1.34486 * 106.32875 * 179.97438 * 25 24 22 27 27 N 1.36446 * 108.86080 * 0.02562 * 26 25 24 28 28 H 0.97003 * 124.85376 * 180.02562 * 27 26 25 29 29 C 1.34667 * 110.29483 * 359.72744 * 27 26 25 30 30 H 1.09001 * 109.46828 * 299.15852 * 1 2 3 31 31 H 1.08997 * 109.47348 * 59.15574 * 1 2 3 32 32 H 1.08991 * 109.47281 * 179.16182 * 1 2 3 33 33 H 1.09001 * 111.00336 * 322.22367 * 4 2 1 34 34 H 1.08994 * 111.00852 * 86.03885 * 4 2 1 35 35 H 0.97005 * 119.99930 * 340.01546 * 7 5 4 36 36 H 1.09001 * 109.46862 * 299.99367 * 10 8 7 37 37 H 1.08996 * 109.47251 * 59.99525 * 10 8 7 38 38 H 0.97002 * 119.99639 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.88224 * 218.39343 * 20 5 4 40 40 H 1.08998 * 109.88221 * 97.22736 * 20 5 4 41 41 H 1.07997 * 126.83677 * 0.03793 * 25 24 22 42 42 H 1.08003 * 125.57160 * 179.97438 * 26 25 24 43 43 H 1.07998 * 125.80263 * 180.30093 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2276 5 6 3.4777 -1.1998 -0.7342 6 1 4.1944 -0.3902 -0.8722 7 7 3.9249 -2.4129 -1.4230 8 6 5.2358 -2.7244 -1.4567 9 8 6.0452 -2.0001 -0.9172 10 6 5.6957 -3.9726 -2.1649 11 16 7.4957 -4.1112 -2.0353 12 6 7.7516 -5.6125 -2.9215 13 1 6.9093 -6.1406 -3.3437 14 6 9.0354 -6.1170 -3.0761 15 7 10.0616 -5.4742 -2.5602 16 14 9.3065 -7.7090 -4.0149 17 1 8.0003 -8.2318 -4.4905 18 1 10.1902 -7.4519 -5.1804 19 1 9.9444 -8.7084 -3.1209 20 6 3.2494 -1.4768 0.7667 21 7 2.0431 -0.7383 1.1683 22 6 1.4965 -0.7373 2.4002 23 8 0.4925 -0.0868 2.6196 24 6 2.1149 -1.5238 3.4808 25 6 1.6521 -1.6317 4.8686 26 6 2.5167 -2.4510 5.4929 27 7 3.4683 -2.8508 4.6006 28 1 4.2059 -3.4463 4.8063 29 6 3.2335 -2.3057 3.3918 30 1 -0.3633 0.5007 0.8975 31 1 -0.3634 0.5269 -0.8823 32 1 -0.3633 -1.0275 -0.0150 33 1 1.4511 -1.6480 -1.4408 34 1 2.1392 -0.1266 -2.1002 35 1 3.2776 -2.9921 -1.8548 36 1 5.2298 -4.8440 -1.7047 37 1 5.4103 -3.9204 -3.2155 38 1 10.9589 -5.8265 -2.6686 39 1 4.1065 -1.1279 1.3427 40 1 3.1013 -2.5445 0.9283 41 1 0.7883 -1.1500 5.3023 42 1 2.4665 -2.7439 6.5313 43 1 3.8286 -2.4583 2.5035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680540949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:07 Heat of formation + Delta-G solvation = -12.709602 kcal Electronic energy + Delta-G solvation = -26245.853015 eV Core-core repulsion = 22418.456449 eV Total energy + Delta-G solvation = -3827.396566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43230 -40.26741 -39.06592 -37.32095 -34.21490 -32.65848 -32.49530 -30.87147 -30.74058 -29.12044 -28.48801 -26.23158 -25.55567 -23.88370 -21.91276 -21.48948 -20.67019 -20.29604 -19.45807 -17.92762 -17.90645 -17.04760 -16.55283 -16.30478 -15.74203 -15.12931 -15.04420 -14.86523 -14.44439 -14.10084 -14.04745 -13.93593 -13.63124 -13.61146 -13.29749 -13.08108 -12.76619 -12.67675 -12.47092 -12.35920 -12.17733 -12.02999 -11.56950 -11.36756 -11.12669 -11.10565 -11.07740 -10.80825 -9.87636 -9.75814 -9.55667 -9.15649 -9.09824 -9.07179 -8.75685 -8.60102 -8.32024 -6.58084 -6.28722 -3.99720 1.59217 2.25142 2.64246 2.90448 2.96262 3.10943 3.16648 3.23699 3.27698 3.44923 3.60980 4.12949 4.14790 4.27998 4.67225 4.72179 4.76216 4.88073 4.97177 4.97977 5.05778 5.06994 5.13666 5.24716 5.30862 5.45669 5.50626 5.53268 5.56351 5.67508 5.77188 5.79288 5.81116 5.92855 6.04902 6.07004 6.34967 6.45274 6.53463 6.69226 7.19499 7.40714 7.52786 7.54583 8.20878 8.28675 8.44586 9.17164 10.78686 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002520 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.916633 B =11106.741852 C =12490.342925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.080 0.920 4 C -0.137 4.137 5 C 0.138 3.862 6 H 0.107 0.893 7 N -0.730 5.730 8 C 0.533 3.467 9 O -0.514 6.514 10 C -0.155 4.155 11 S -0.060 6.060 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.082 3.918 21 N -0.614 5.614 22 C 0.609 3.391 23 O -0.544 6.544 24 C -0.233 4.233 25 C -0.143 4.143 26 C -0.023 4.023 27 N -0.550 5.550 28 H 0.419 0.581 29 C 0.041 3.959 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.147 0.853 42 H 0.170 0.830 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.902 6.589 9.333 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.031 3.969 6 H 0.125 0.875 7 N -0.384 5.384 8 C 0.319 3.681 9 O -0.387 6.387 10 C -0.305 4.305 11 S 0.167 5.833 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.043 4.043 21 N -0.349 5.349 22 C 0.401 3.599 23 O -0.423 6.423 24 C -0.243 4.243 25 C -0.167 4.167 26 C -0.151 4.151 27 N -0.144 5.144 28 H 0.256 0.744 29 C -0.095 4.095 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.165 0.835 42 H 0.187 0.813 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.818 8.072 10.518 21.416 hybrid contribution -0.536 -2.552 -1.358 2.940 sum -17.353 5.521 9.160 20.384 Atomic orbital electron populations 1.22169 0.93500 1.02746 1.03756 1.21841 0.95544 0.95548 0.83491 0.90256 1.23197 0.95015 1.01359 0.97937 1.21835 0.96207 0.88891 0.89917 0.87536 1.46008 1.08342 1.26062 1.58024 1.20400 0.81408 0.86786 0.79465 1.90714 1.52733 1.50961 1.44322 1.23542 1.07245 0.97009 1.02720 1.85390 0.92692 1.32427 1.72811 1.22899 0.95793 1.09370 1.40319 0.90855 1.24996 0.94961 0.98027 0.95602 1.70023 0.99132 1.38521 1.42571 0.86116 0.78401 0.81693 0.79285 1.19599 1.20530 1.20565 1.22805 0.87838 0.97048 0.96571 1.48303 1.28158 1.49052 1.09355 1.17023 0.82707 0.80199 0.79945 1.90691 1.25401 1.44465 1.81722 1.20379 1.00700 1.07911 0.95350 1.21912 1.01040 1.01870 0.91891 1.21842 0.93008 1.04052 0.96222 1.41731 1.24546 1.39162 1.08990 0.74389 1.22826 0.99017 0.97880 0.89802 0.89223 0.92068 0.92665 0.89777 0.88908 0.76386 0.89155 0.89067 0.92197 0.90167 0.90569 0.83542 0.81320 0.80090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.71 37.16 0.32 -1.24 16 2 C 0.14 1.31 3.77 -66.42 -0.25 1.06 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -1.04 6.11 -24.58 -0.15 -1.19 16 5 C 0.14 1.38 3.23 -66.10 -0.21 1.17 16 6 H 0.11 1.22 7.70 -51.93 -0.40 0.82 16 7 N -0.73 -8.06 5.13 -52.03 -0.27 -8.33 16 8 C 0.53 8.67 7.84 -10.98 -0.09 8.58 16 9 O -0.51 -10.33 15.59 5.56 0.09 -10.24 16 10 C -0.15 -2.83 6.16 36.01 0.22 -2.61 16 11 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 12 C -0.54 -14.66 9.50 30.94 0.29 -14.36 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.50 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -25.37 13.22 55.49 0.73 -24.64 16 16 Si 0.92 20.77 29.55 -169.99 -5.02 15.74 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.08 0.84 4.75 -3.06 -0.01 0.82 16 21 N -0.61 -6.80 3.24 -164.36 -0.53 -7.33 16 22 C 0.61 8.16 7.62 -12.59 -0.10 8.07 16 23 O -0.54 -8.64 14.62 5.25 0.08 -8.56 16 24 C -0.23 -2.82 6.26 -103.35 -0.65 -3.46 16 25 C -0.14 -1.55 10.97 -37.50 -0.41 -1.96 16 26 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 27 N -0.55 -4.37 5.90 -12.85 -0.08 -4.44 16 28 H 0.42 2.14 8.96 -40.82 -0.37 1.78 16 29 C 0.04 0.41 10.42 -16.84 -0.18 0.24 16 30 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 3.37 8.52 -40.82 -0.35 3.02 16 36 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 37 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.08 0.87 7.05 -51.93 -0.37 0.50 16 40 H 0.08 0.75 6.74 -51.93 -0.35 0.40 16 41 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.18 1.65 4.42 -52.49 -0.23 1.42 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -36.03 370.14 -8.84 -44.87 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.70 Total: 4.45 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.50 Total: -3.36 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.14 Total: -44.74 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.16 Total: -18.80 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.03 -8.84 -44.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680540949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.160 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds