Wall clock time and date at job start Tue Mar 31 2020 20:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.00271 * 2 1 4 4 C 1.54330 * 109.88329 * 238.90058 * 2 1 3 5 5 C 1.55157 * 103.10386 * 262.87150 * 4 2 1 6 6 H 1.08995 * 111.00855 * 82.47855 * 5 4 2 7 7 N 1.46501 * 111.00416 * 206.29859 * 5 4 2 8 8 C 1.34768 * 119.99908 * 204.99947 * 7 5 4 9 9 O 1.21282 * 120.00204 * 359.97438 * 8 7 5 10 10 C 1.50705 * 120.00124 * 179.97438 * 8 7 5 11 11 S 1.80996 * 109.47160 * 179.97438 * 10 8 7 12 12 C 1.76201 * 99.99895 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99968 * 0.02562 * 12 11 10 14 14 C 1.38798 * 120.00323 * 180.02562 * 12 11 10 15 15 N 1.31634 * 119.99548 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00321 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47076 * 89.99801 * 16 14 12 18 18 H 1.48502 * 109.47262 * 209.99690 * 16 14 12 19 19 H 1.48501 * 109.47391 * 330.00075 * 16 14 12 20 20 C 1.54911 * 101.57898 * 324.40697 * 5 4 2 21 21 N 1.47428 * 104.83574 * 37.01284 * 20 5 4 22 22 C 1.34772 * 125.64867 * 155.92759 * 21 20 5 23 23 O 1.21628 * 119.99812 * 178.50498 * 22 21 20 24 24 C 1.47264 * 120.00220 * 358.50129 * 22 21 20 25 25 C 1.46683 * 126.93898 * 188.66838 * 24 22 21 26 26 C 1.34495 * 106.32997 * 179.97438 * 25 24 22 27 27 N 1.36445 * 108.85471 * 359.97438 * 26 25 24 28 28 H 0.96999 * 124.85277 * 179.97438 * 27 26 25 29 29 C 1.34663 * 110.29987 * 359.75173 * 27 26 25 30 30 H 1.08996 * 109.47752 * 181.09590 * 1 2 3 31 31 H 1.08998 * 109.46852 * 301.09905 * 1 2 3 32 32 H 1.08998 * 109.46433 * 61.09297 * 1 2 3 33 33 H 1.08998 * 110.71520 * 144.41513 * 4 2 1 34 34 H 1.08998 * 110.71216 * 21.31980 * 4 2 1 35 35 H 0.97005 * 119.99517 * 24.99358 * 7 5 4 36 36 H 1.08994 * 109.46744 * 300.00035 * 10 8 7 37 37 H 1.09002 * 109.46840 * 60.00242 * 10 8 7 38 38 H 0.97000 * 119.99513 * 180.02562 * 15 14 12 39 39 H 1.09005 * 110.36431 * 155.85106 * 20 5 4 40 40 H 1.08999 * 110.36786 * 278.06008 * 20 5 4 41 41 H 1.08002 * 126.83695 * 359.96013 * 25 24 22 42 42 H 1.07996 * 125.56916 * 179.97438 * 26 25 24 43 43 H 1.07994 * 125.80346 * 180.28999 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2427 5 6 2.3509 -2.1715 -0.6968 6 1 1.4436 -2.7746 -0.6652 7 7 3.3902 -2.8327 -1.4899 8 6 3.4502 -4.1783 -1.5342 9 8 2.6442 -4.8419 -0.9171 10 6 4.5190 -4.8584 -2.3505 11 16 4.3364 -6.6535 -2.2078 12 6 5.6731 -7.1791 -3.2283 13 1 6.3040 -6.4475 -3.7112 14 6 5.9154 -8.5334 -3.4118 15 7 5.1468 -9.4251 -2.8228 16 14 7.3321 -9.0906 -4.4943 17 1 8.5579 -9.2367 -3.6689 18 1 6.9958 -10.3964 -5.1165 19 1 7.5689 -8.0818 -5.5579 20 6 2.8583 -1.8565 0.7325 21 7 2.0335 -0.7210 1.1841 22 6 1.7814 -0.3945 2.4672 23 8 1.1063 0.5840 2.7243 24 6 2.3233 -1.2225 3.5578 25 6 2.0053 -1.1174 4.9859 26 6 2.7275 -2.0682 5.6051 27 7 3.4587 -2.7441 4.6722 28 1 4.0620 -3.4784 4.8664 29 6 3.2195 -2.2493 3.4428 30 1 -0.3634 -1.0274 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3632 0.4968 -0.8996 33 1 2.9657 -0.2833 -1.6181 34 1 1.2929 -0.7863 -2.0212 35 1 4.0350 -2.3018 -1.9832 36 1 4.4200 -4.5647 -3.3955 37 1 5.5012 -4.5630 -1.9814 38 1 5.3164 -10.3716 -2.9507 39 1 2.7101 -2.7164 1.3858 40 1 3.9114 -1.5765 0.7081 41 1 1.3266 -0.4160 5.4482 42 1 2.7285 -2.2645 6.6670 43 1 3.6619 -2.6017 2.5229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680540950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:09 Heat of formation + Delta-G solvation = -11.976843 kcal Electronic energy + Delta-G solvation = -26227.394851 eV Core-core repulsion = 22400.030060 eV Total energy + Delta-G solvation = -3827.364791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43452 -40.24065 -39.03423 -37.36796 -34.21334 -32.63140 -32.49114 -30.88512 -30.65153 -29.15016 -28.44856 -26.27095 -25.55174 -24.04387 -22.00249 -21.28681 -20.54547 -20.43588 -19.54399 -18.10005 -17.92843 -16.90376 -16.66176 -15.96128 -15.52502 -15.20640 -15.05872 -14.86057 -14.62722 -14.13273 -14.06012 -13.89328 -13.66167 -13.48421 -13.23634 -13.12440 -13.10598 -12.63101 -12.48085 -12.39215 -12.19014 -11.99117 -11.42839 -11.35694 -11.11992 -11.08761 -10.94242 -10.80600 -9.98137 -9.88207 -9.55067 -9.16031 -9.11051 -9.06316 -8.76046 -8.58866 -8.31922 -6.57691 -6.28142 -3.99293 1.59492 2.25721 2.60924 2.90852 2.97113 3.10833 3.17585 3.23832 3.27526 3.44500 3.60408 4.14030 4.18335 4.29932 4.63373 4.68506 4.76861 4.89049 4.94076 4.97470 5.07093 5.07415 5.14155 5.23212 5.32173 5.40176 5.47533 5.51806 5.58900 5.68600 5.78455 5.80442 5.83935 5.87186 6.04950 6.08463 6.24998 6.46145 6.52807 6.69036 7.19457 7.39742 7.52937 7.54905 8.19615 8.28808 8.45355 9.17511 10.79222 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.002491 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.992231 B =11236.347287 C =12617.759706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.079 0.921 4 C -0.137 4.137 5 C 0.137 3.863 6 H 0.109 0.891 7 N -0.729 5.729 8 C 0.533 3.467 9 O -0.513 6.513 10 C -0.154 4.154 11 S -0.060 6.060 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.075 3.925 21 N -0.613 5.613 22 C 0.609 3.391 23 O -0.545 6.545 24 C -0.231 4.231 25 C -0.143 4.143 26 C -0.022 4.022 27 N -0.550 5.550 28 H 0.419 0.581 29 C 0.039 3.961 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.170 0.830 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 18.406 9.801 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.030 3.970 6 H 0.127 0.873 7 N -0.383 5.383 8 C 0.320 3.680 9 O -0.387 6.387 10 C -0.305 4.305 11 S 0.167 5.833 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.049 4.049 21 N -0.348 5.348 22 C 0.401 3.599 23 O -0.423 6.423 24 C -0.242 4.242 25 C -0.167 4.167 26 C -0.150 4.150 27 N -0.144 5.144 28 H 0.256 0.744 29 C -0.097 4.097 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.236 0.764 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.165 0.835 42 H 0.187 0.813 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.614 17.543 11.140 21.287 hybrid contribution 2.533 0.204 -1.579 2.992 sum -2.081 17.746 9.561 20.265 Atomic orbital electron populations 1.22166 0.94369 1.02729 1.03026 1.21555 0.95019 0.96143 0.83482 0.90255 1.23043 1.02725 0.94438 0.97311 1.21965 0.92598 0.93260 0.89168 0.87336 1.45921 1.33815 1.06785 1.51789 1.20401 0.85355 0.81336 0.80945 1.90720 1.40561 1.63909 1.43509 1.23540 0.99438 1.05611 1.01898 1.85404 1.42726 0.90067 1.65109 1.22857 1.16574 0.94642 1.34370 0.90900 1.24994 0.97043 0.95550 0.95982 1.70014 1.37277 1.01643 1.41321 0.86166 0.81159 0.78181 0.79993 1.20274 1.20727 1.19672 1.23149 0.95264 0.89766 0.96745 1.48385 1.51341 1.30114 1.04914 1.17044 0.79147 0.83618 0.80138 1.90742 1.40305 1.28195 1.83088 1.20357 1.07069 1.02565 0.94180 1.21914 1.02816 1.00791 0.91211 1.21842 0.99773 0.98215 0.95191 1.41725 1.36412 1.29741 1.06528 0.74403 1.22837 1.00837 0.96783 0.89281 0.92229 0.90915 0.91614 0.89874 0.88962 0.76413 0.89064 0.89122 0.92142 0.88978 0.90726 0.83536 0.81291 0.79948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.06 37.16 0.34 -1.27 16 2 C 0.14 1.34 3.51 -66.69 -0.23 1.10 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.14 -1.03 6.13 -24.89 -0.15 -1.19 16 5 C 0.14 1.39 3.42 -65.78 -0.23 1.17 16 6 H 0.11 1.35 7.54 -51.93 -0.39 0.96 16 7 N -0.73 -7.97 5.20 -51.73 -0.27 -8.24 16 8 C 0.53 8.71 7.85 -10.99 -0.09 8.62 16 9 O -0.51 -10.47 15.50 5.56 0.09 -10.38 16 10 C -0.15 -2.82 6.16 36.01 0.22 -2.59 16 11 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 12 C -0.54 -14.67 9.50 30.94 0.29 -14.38 16 13 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 14 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 15 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 16 Si 0.92 20.76 29.55 -169.99 -5.02 15.73 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 20 C 0.08 0.74 4.99 -2.53 -0.01 0.73 16 21 N -0.61 -6.81 3.09 -163.97 -0.51 -7.32 16 22 C 0.61 8.29 7.62 -12.59 -0.10 8.20 16 23 O -0.54 -8.96 15.96 5.25 0.08 -8.88 16 24 C -0.23 -2.82 6.23 -103.35 -0.64 -3.46 16 25 C -0.14 -1.57 10.98 -37.50 -0.41 -1.98 16 26 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 27 N -0.55 -4.33 5.90 -12.85 -0.08 -4.41 16 28 H 0.42 2.07 8.96 -40.82 -0.37 1.71 16 29 C 0.04 0.38 10.25 -16.84 -0.17 0.21 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.87 6.84 -51.93 -0.36 0.51 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.49 8.00 -51.93 -0.42 0.08 16 34 H 0.09 0.63 7.83 -51.93 -0.41 0.23 16 35 H 0.40 3.20 8.57 -40.82 -0.35 2.85 16 36 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 37 H 0.09 1.50 8.14 -51.91 -0.42 1.08 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.09 0.99 5.31 -51.93 -0.28 0.71 16 40 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 41 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.18 1.57 4.74 -52.49 -0.25 1.32 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -36.64 372.17 -8.78 -45.42 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.73 Total: 4.19 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.48 Total: -3.29 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.12 Total: -44.65 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.64 -8.78 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680540950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.442 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds