Wall clock time and date at job start Tue Mar 31 2020 20:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.99537 * 2 1 4 4 C 1.54324 * 109.88258 * 238.90626 * 2 1 3 5 5 H 1.09002 * 110.72090 * 336.75483 * 4 2 1 6 6 N 1.46494 * 110.71847 * 100.02938 * 4 2 1 7 7 C 1.34776 * 119.99593 * 204.99873 * 6 4 2 8 8 O 1.21696 * 120.00615 * 0.02562 * 7 6 4 9 9 C 1.46685 * 119.99999 * 179.97438 * 7 6 4 10 10 C 1.37866 * 126.23195 * 179.97438 * 9 7 6 11 11 C 1.39843 * 107.08319 * 179.97438 * 10 9 7 12 12 C 1.35451 * 107.86424 * 0.02562 * 11 10 9 13 13 N 1.35534 * 108.87013 * 359.76496 * 12 11 10 14 14 H 0.97000 * 125.67429 * 180.26056 * 13 12 11 15 15 C 1.55155 * 102.93924 * 218.39233 * 4 2 1 16 16 C 1.54689 * 101.67730 * 35.33807 * 15 4 2 17 17 N 1.47017 * 109.87719 * 121.09757 * 2 1 3 18 18 C 1.34775 * 125.64996 * 298.31670 * 17 2 1 19 19 O 1.21284 * 120.00295 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99957 * 179.97438 * 18 17 2 21 21 S 1.80998 * 109.47052 * 180.02562 * 20 18 17 22 22 C 1.76199 * 100.00013 * 180.02562 * 21 20 18 23 23 H 1.07991 * 119.99794 * 0.02562 * 22 21 20 24 24 C 1.38798 * 119.99771 * 180.02562 * 22 21 20 25 25 N 1.31633 * 120.00311 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99653 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48508 * 109.47016 * 299.99635 * 26 24 22 29 29 H 1.48495 * 109.47483 * 59.99992 * 26 24 22 30 30 H 1.09000 * 109.47238 * 300.36241 * 1 2 3 31 31 H 1.09000 * 109.46862 * 60.35654 * 1 2 3 32 32 H 1.08999 * 109.47336 * 180.35323 * 1 2 3 33 33 H 0.96994 * 120.00589 * 24.99876 * 6 4 2 34 34 H 1.07996 * 126.46487 * 0.02562 * 10 9 7 35 35 H 1.08000 * 126.06815 * 179.97438 * 11 10 9 36 36 H 1.08002 * 125.56289 * 179.97438 * 12 11 10 37 37 H 1.09001 * 111.00292 * 153.57485 * 15 4 2 38 38 H 1.08998 * 111.00228 * 277.38888 * 15 4 2 39 39 H 1.09002 * 110.38906 * 204.36355 * 16 15 4 40 40 H 1.08994 * 110.24141 * 82.11486 * 16 15 4 41 41 H 1.09005 * 109.46512 * 60.00633 * 20 18 17 42 42 H 1.08991 * 109.47135 * 300.00153 * 20 18 17 43 43 H 0.97001 * 119.99662 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3052 -1.4459 -1.6183 6 7 2.4556 0.1961 -2.2874 7 6 2.4583 -0.1883 -3.5792 8 8 2.1275 -1.3207 -3.8779 9 6 2.8589 0.7587 -4.6253 10 6 2.9092 0.5039 -5.9793 11 6 3.3405 1.6790 -6.6027 12 6 3.5422 2.6102 -5.6400 13 7 3.2485 2.0650 -4.4344 14 1 3.3049 2.5194 -3.5793 15 6 3.2876 -1.5142 -0.6924 16 6 2.8190 -1.8764 0.7367 17 7 2.0299 -0.7141 1.1839 18 6 1.8085 -0.3613 2.4657 19 8 1.1452 0.6222 2.7180 20 6 2.3841 -1.1896 3.5854 21 16 1.9138 -0.4643 5.1757 22 6 2.6973 -1.5986 6.2729 23 1 3.2579 -2.4327 5.8775 24 6 2.5941 -1.4201 7.6455 25 7 1.9104 -0.4037 8.1275 26 14 3.4253 -2.6223 8.8088 27 1 3.1651 -2.2131 10.2124 28 1 2.8823 -3.9859 8.5825 29 1 4.8887 -2.6240 8.5564 30 1 -0.3634 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0063 33 1 2.7189 1.0988 -2.0495 34 1 2.6613 -0.4274 -6.4668 35 1 3.4875 1.8189 -7.6635 36 1 3.8787 3.6229 -5.8063 37 1 3.4852 -2.4110 -1.2796 38 1 4.1656 -0.8690 -0.6609 39 1 3.6776 -2.0265 1.3913 40 1 2.1971 -2.7712 0.7142 41 1 3.4708 -1.2087 3.5015 42 1 1.9967 -2.2063 3.5215 43 1 1.4791 0.2207 7.5234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001685163371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:45 Heat of formation + Delta-G solvation = -26.543723 kcal Electronic energy + Delta-G solvation = -25922.461978 eV Core-core repulsion = 22094.465520 eV Total energy + Delta-G solvation = -3827.996458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72464 -40.51544 -39.21204 -37.44331 -34.64279 -32.56504 -32.00364 -31.57429 -31.12567 -29.68622 -28.59322 -25.91401 -24.89051 -23.25410 -23.01013 -21.52252 -20.92530 -20.53212 -19.67994 -18.87365 -18.23083 -17.24474 -16.60241 -16.06576 -15.89477 -15.55597 -15.16718 -14.53262 -14.39422 -14.22768 -14.15141 -14.07964 -13.86611 -13.83186 -13.09476 -13.05221 -12.99124 -12.73935 -12.68023 -12.41174 -12.30080 -12.04095 -11.93386 -11.73879 -11.51566 -11.08743 -10.94388 -10.53362 -10.19822 -9.65761 -9.60842 -9.50420 -9.46886 -9.04844 -8.72227 -8.69101 -8.26874 -6.71824 -6.65594 -4.04035 1.02355 2.30890 2.39579 2.61820 2.85473 2.88443 2.98589 3.30293 3.35581 3.40865 3.55596 3.99881 4.20105 4.24287 4.40707 4.59724 4.66489 4.82833 4.84657 4.90557 4.92871 5.00326 5.09248 5.19017 5.34006 5.35846 5.41950 5.48115 5.60388 5.61837 5.66783 5.70292 5.73033 5.78009 5.96049 6.00037 6.10272 6.23281 6.33057 6.45048 6.83312 7.01893 7.47461 7.71657 7.88319 8.36676 8.46492 9.23344 10.78214 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.001978 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.750644 B =14151.033749 C =14352.602345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.076 0.924 4 C 0.139 3.861 5 H 0.113 0.887 6 N -0.722 5.722 7 C 0.593 3.407 8 O -0.525 6.525 9 C -0.060 4.060 10 C -0.104 4.104 11 C -0.213 4.213 12 C 0.025 3.975 13 N -0.541 5.541 14 H 0.416 0.584 15 C -0.144 4.144 16 C 0.101 3.899 17 N -0.621 5.621 18 C 0.550 3.450 19 O -0.513 6.513 20 C -0.125 4.125 21 S -0.116 6.116 22 C -0.608 4.608 23 H 0.066 0.934 24 C 0.036 3.964 25 N -0.883 5.883 26 Si 1.084 2.916 27 H -0.278 1.278 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 3.174 -28.483 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.094 0.906 4 C 0.033 3.967 5 H 0.131 0.869 6 N -0.373 5.373 7 C 0.381 3.619 8 O -0.400 6.400 9 C -0.172 4.172 10 C -0.130 4.130 11 C -0.237 4.237 12 C -0.111 4.111 13 N -0.137 5.137 14 H 0.253 0.747 15 C -0.183 4.183 16 C -0.023 4.023 17 N -0.359 5.359 18 C 0.339 3.661 19 O -0.387 6.387 20 C -0.276 4.276 21 S 0.111 5.889 22 C -0.756 4.756 23 H 0.084 0.916 24 C -0.175 4.175 25 N -0.517 5.517 26 Si 0.910 3.090 27 H -0.203 1.203 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.230 0.770 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.189 0.811 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.382 3.543 -26.442 26.892 hybrid contribution 0.909 -0.236 -1.466 1.741 sum 4.291 3.307 -27.908 28.429 Atomic orbital electron populations 1.22149 0.93876 1.02863 1.03225 1.21565 0.95309 0.96062 0.84111 0.90619 1.22090 0.97333 0.91018 0.86230 0.86925 1.45805 1.69575 1.15845 1.06060 1.17046 0.77184 0.86569 0.81084 1.90862 1.48030 1.19221 1.81913 1.20399 1.15764 0.85480 0.95606 1.21369 1.01437 0.99411 0.90815 1.20948 1.09656 0.93653 0.99463 1.22094 1.05150 0.99920 0.83918 1.42056 1.51944 1.10452 1.09252 0.74653 1.23185 0.97952 1.01720 0.95456 1.22279 0.95878 0.89243 0.94894 1.48490 1.53869 1.28984 1.04520 1.20006 0.79785 0.85031 0.81311 1.90699 1.38551 1.26905 1.82517 1.23301 1.03740 1.02474 0.98064 1.84809 1.70830 1.39473 0.93815 1.23689 1.41398 1.15396 0.95071 0.91591 1.26061 0.96060 0.99429 0.95949 1.70807 1.29184 1.12825 1.38900 0.83333 0.75612 0.74407 0.75684 1.20252 1.21100 1.21123 0.90392 0.91887 0.92072 0.77047 0.83396 0.83781 0.81080 0.88997 0.90184 0.89766 0.90791 0.89021 0.88913 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.10 37.16 0.34 -1.56 16 2 C 0.13 1.49 3.21 -66.95 -0.21 1.27 16 3 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 4 C 0.14 1.26 2.85 -66.10 -0.19 1.08 16 5 H 0.11 1.15 7.26 -51.93 -0.38 0.77 16 6 N -0.72 -5.56 5.17 -53.33 -0.28 -5.84 16 7 C 0.59 5.87 7.79 -12.85 -0.10 5.77 16 8 O -0.52 -7.02 16.53 5.19 0.09 -6.94 16 9 C -0.06 -0.50 7.06 -81.98 -0.58 -1.08 16 10 C -0.10 -0.89 10.65 -39.12 -0.42 -1.30 16 11 C -0.21 -1.38 10.81 -39.98 -0.43 -1.81 16 12 C 0.03 0.12 11.89 -16.91 -0.20 -0.08 16 13 N -0.54 -2.86 5.99 -9.39 -0.06 -2.91 16 14 H 0.42 1.06 8.19 -40.82 -0.33 0.73 16 15 C -0.14 -1.23 6.76 -24.70 -0.17 -1.40 16 16 C 0.10 1.03 6.68 -2.65 -0.02 1.01 16 17 N -0.62 -8.36 3.07 -163.15 -0.50 -8.86 16 18 C 0.55 10.10 7.66 -10.98 -0.08 10.02 16 19 O -0.51 -11.20 14.90 5.55 0.08 -11.12 16 20 C -0.12 -2.50 5.17 36.01 0.19 -2.32 16 21 S -0.12 -3.08 19.60 -107.50 -2.11 -5.19 16 22 C -0.61 -17.36 9.50 30.94 0.29 -17.07 16 23 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 24 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 25 N -0.88 -27.31 13.67 55.49 0.76 -26.55 16 26 Si 1.08 24.74 29.92 -169.99 -5.09 19.66 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 30 H 0.08 1.14 6.88 -51.93 -0.36 0.78 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 2.10 7.50 -40.82 -0.31 1.79 16 34 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.17 0.29 8.06 -52.49 -0.42 -0.13 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.71 7.84 -51.91 -0.41 1.30 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.28 8.76 7.12 -40.82 -0.29 8.47 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -37.39 375.59 -8.99 -46.38 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.87 Total: 2.25 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.68 Total: -6.54 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.07 Total: -44.17 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.17 Total: -18.06 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.66 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.11 Total: -5.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.39 -8.99 -46.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685163371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.837 kcal (2) G-P(sol) polarization free energy of solvation -37.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds