Wall clock time and date at job start Tue Mar 31 2020 20:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.99724 * 2 1 4 4 C 1.54325 * 109.88225 * 238.90541 * 2 1 3 5 5 H 1.08992 * 110.72143 * 336.75021 * 4 2 1 6 6 N 1.46506 * 110.72084 * 100.02722 * 4 2 1 7 7 C 1.34777 * 119.99568 * 199.97758 * 6 4 2 8 8 O 1.21279 * 120.00095 * 359.97438 * 7 6 4 9 9 C 1.50705 * 119.99797 * 179.97438 * 7 6 4 10 10 S 1.80992 * 109.47235 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00184 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99706 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00095 * 179.97438 * 11 10 9 14 14 N 1.31623 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99847 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47206 * 90.00618 * 15 13 11 17 17 H 1.48506 * 109.47295 * 209.99986 * 15 13 11 18 18 H 1.48501 * 109.47259 * 330.00235 * 15 13 11 19 19 C 1.55160 * 102.94008 * 218.38514 * 4 2 1 20 20 C 1.54908 * 101.61466 * 35.48262 * 19 4 2 21 21 N 1.47020 * 109.88342 * 121.09482 * 2 1 3 22 22 C 1.34777 * 125.64671 * 298.41266 * 21 2 1 23 23 O 1.21626 * 120.00183 * 354.45767 * 22 21 2 24 24 C 1.47264 * 119.99825 * 174.46320 * 22 21 2 25 25 C 1.46693 * 126.94204 * 352.85082 * 24 22 21 26 26 C 1.34489 * 106.32847 * 179.89366 * 25 24 22 27 27 N 1.36441 * 108.85961 * 0.37657 * 26 25 24 28 28 H 0.97001 * 124.85317 * 179.77192 * 27 26 25 29 29 C 1.34657 * 110.29830 * 359.74942 * 27 26 25 30 30 H 1.09000 * 109.46976 * 181.09567 * 1 2 3 31 31 H 1.09000 * 109.47128 * 301.09748 * 1 2 3 32 32 H 1.09000 * 109.46969 * 61.09618 * 1 2 3 33 33 H 0.96996 * 119.99872 * 19.97238 * 6 4 2 34 34 H 1.09008 * 109.46781 * 299.99841 * 9 7 6 35 35 H 1.09002 * 109.47176 * 59.99227 * 9 7 6 36 36 H 0.96999 * 120.00181 * 179.97438 * 14 13 11 37 37 H 1.09004 * 111.00414 * 153.57528 * 19 4 2 38 38 H 1.09000 * 111.00863 * 277.38737 * 19 4 2 39 39 H 1.09003 * 110.36400 * 81.84762 * 20 19 4 40 40 H 1.09001 * 110.36648 * 204.16564 * 20 19 4 41 41 H 1.08000 * 126.83092 * 0.02562 * 25 24 22 42 42 H 1.07997 * 125.56680 * 180.09415 * 26 25 24 43 43 H 1.08006 * 125.80351 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3052 -1.4459 -1.6182 6 7 2.4555 0.1961 -2.2876 7 6 2.5559 -0.2160 -3.5668 8 8 2.3150 -1.3696 -3.8530 9 6 2.9675 0.7569 -4.6417 10 16 3.0107 -0.0922 -6.2396 11 6 3.5052 1.2403 -7.2809 12 1 3.6808 2.2189 -6.8590 13 6 3.6702 1.0321 -8.6433 14 7 3.4567 -0.1606 -9.1574 15 14 4.1952 2.4447 -9.7471 16 1 5.6775 2.4865 -9.8263 17 1 3.6323 2.2459 -11.1069 18 1 3.6931 3.7245 -9.1858 19 6 3.2877 -1.5141 -0.6924 20 6 2.8156 -1.8793 0.7371 21 7 2.0300 -0.7140 1.1839 22 6 1.8071 -0.3621 2.4657 23 8 1.2275 0.6767 2.7192 24 6 2.2654 -1.2354 3.5593 25 6 2.8433 -2.5778 3.4325 26 6 3.1147 -2.9923 4.6828 27 7 2.7422 -2.0171 5.5613 28 1 2.8320 -2.0758 6.5254 29 6 2.2327 -0.9613 4.8989 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8997 33 1 2.6485 1.1187 -2.0586 34 1 2.2496 1.5761 -4.6845 35 1 3.9572 1.1526 -4.4140 36 1 3.5716 -0.3060 -10.1095 37 1 3.4853 -2.4110 -1.2796 38 1 4.1657 -0.8689 -0.6611 39 1 2.1901 -2.7716 0.7136 40 1 3.6732 -2.0332 1.3921 41 1 3.0182 -3.1235 2.5170 42 1 3.5514 -3.9437 4.9482 43 1 1.8616 -0.0522 5.3488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001685168456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:49 Heat of formation + Delta-G solvation = -15.136936 kcal Electronic energy + Delta-G solvation = -25907.808145 eV Core-core repulsion = 22080.306322 eV Total energy + Delta-G solvation = -3827.501823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55040 -40.30445 -38.95012 -37.35603 -34.15168 -32.42478 -32.19396 -31.26809 -30.53465 -29.52970 -28.77049 -25.66094 -25.32246 -24.14995 -22.30127 -21.14874 -20.65555 -20.40795 -19.41000 -18.32881 -17.83270 -16.94702 -16.45235 -15.94504 -15.72901 -15.22937 -14.89191 -14.79686 -14.57164 -14.25657 -14.01212 -13.91215 -13.82067 -13.57964 -13.26117 -13.12787 -12.85786 -12.61965 -12.46934 -12.41028 -12.06176 -11.88652 -11.55624 -11.26090 -11.05637 -11.01962 -10.91793 -10.75031 -10.04197 -9.81009 -9.42934 -9.24328 -9.06662 -8.97569 -8.87631 -8.65410 -8.23583 -6.49484 -6.21235 -3.91650 1.46504 2.04969 2.57465 2.90131 3.05652 3.11565 3.23113 3.28892 3.31599 3.35690 3.72957 4.16914 4.21170 4.40161 4.54107 4.71716 4.82278 4.89349 4.94357 4.99970 5.04529 5.14095 5.14709 5.20750 5.37612 5.46463 5.47256 5.55580 5.61247 5.67042 5.82122 5.87496 5.90251 5.99516 6.11176 6.15135 6.19197 6.31463 6.51627 6.61425 7.00007 7.37819 7.60340 7.67249 8.11140 8.35886 8.58289 9.24310 10.86165 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.001926 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.095288 B =14538.054706 C =14842.336413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 H 0.081 0.919 4 C 0.142 3.858 5 H 0.106 0.894 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.149 4.149 20 C 0.097 3.903 21 N -0.608 5.608 22 C 0.608 3.392 23 O -0.551 6.551 24 C -0.231 4.231 25 C -0.177 4.177 26 C -0.019 4.019 27 N -0.554 5.554 28 H 0.418 0.582 29 C 0.075 3.925 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -4.199 30.582 30.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 H 0.099 0.901 4 C 0.035 3.965 5 H 0.123 0.877 6 N -0.384 5.384 7 C 0.322 3.678 8 O -0.389 6.389 9 C -0.305 4.305 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.188 4.188 20 C -0.026 4.026 21 N -0.342 5.342 22 C 0.400 3.600 23 O -0.431 6.431 24 C -0.241 4.241 25 C -0.201 4.201 26 C -0.147 4.147 27 N -0.148 5.148 28 H 0.254 0.746 29 C -0.062 4.062 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.172 0.828 42 H 0.187 0.813 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.368 -5.710 30.256 30.821 hybrid contribution 0.839 2.549 0.133 2.687 sum -0.529 -3.161 30.389 30.558 Atomic orbital electron populations 1.22126 0.93976 1.02660 1.03167 1.21649 0.95076 0.96413 0.83944 0.90132 1.21905 0.96787 0.91388 0.86379 0.87652 1.45963 1.72087 1.13431 1.06931 1.20307 0.76145 0.89062 0.82263 1.90700 1.47650 1.18952 1.81551 1.23539 1.04165 1.01952 1.00800 1.85374 1.89734 1.15387 0.92769 1.22871 1.53532 0.97196 0.94775 0.90913 1.24987 0.94915 0.96542 0.97139 1.70012 1.45938 1.21084 1.13255 0.86172 0.78787 0.81277 0.79285 1.20287 1.20758 1.19690 1.23297 0.98522 1.02189 0.94781 1.22684 0.95584 0.88860 0.95439 1.48195 1.52820 1.28648 1.04531 1.17002 0.78225 0.84307 0.80479 1.90769 1.43754 1.25126 1.83417 1.20287 1.13934 0.97287 0.92590 1.22556 1.04814 0.95307 0.97410 1.21871 1.07851 0.95475 0.89467 1.41675 1.49192 1.14302 1.09676 0.74567 1.21822 0.99957 0.92712 0.91698 0.92206 0.91164 0.91209 0.76592 0.89130 0.89165 0.92190 0.88833 0.90093 0.90881 0.89323 0.82756 0.81337 0.80608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.10 37.16 0.34 -1.43 16 2 C 0.13 1.45 3.18 -66.95 -0.21 1.24 16 3 H 0.08 0.90 7.69 -51.92 -0.40 0.50 16 4 C 0.14 1.64 2.76 -66.09 -0.18 1.46 16 5 H 0.11 1.37 7.41 -51.93 -0.38 0.99 16 6 N -0.73 -9.42 5.20 -52.03 -0.27 -9.69 16 7 C 0.54 9.58 7.85 -10.98 -0.09 9.49 16 8 O -0.51 -11.12 15.59 5.56 0.09 -11.04 16 9 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 15 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.15 -1.50 6.76 -24.58 -0.17 -1.66 16 20 C 0.10 0.82 5.12 -2.51 -0.01 0.81 16 21 N -0.61 -6.51 3.07 -164.30 -0.50 -7.01 16 22 C 0.61 7.44 7.58 -12.59 -0.10 7.35 16 23 O -0.55 -8.38 16.18 5.25 0.09 -8.29 16 24 C -0.23 -2.25 6.18 -103.35 -0.64 -2.88 16 25 C -0.18 -1.31 9.25 -37.49 -0.35 -1.65 16 26 C -0.02 -0.10 11.89 -16.83 -0.20 -0.30 16 27 N -0.55 -2.55 5.90 -12.85 -0.08 -2.63 16 28 H 0.42 0.49 8.96 -40.82 -0.37 0.12 16 29 C 0.07 0.56 11.70 -16.84 -0.20 0.36 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.86 7.09 -51.93 -0.37 0.49 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 4.17 8.31 -40.82 -0.34 3.83 16 34 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 35 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.55 7.75 -51.93 -0.40 0.14 16 40 H 0.09 0.64 5.93 -51.93 -0.31 0.33 16 41 H 0.16 0.94 5.17 -52.49 -0.27 0.67 16 42 H 0.17 0.39 8.06 -52.49 -0.42 -0.04 16 43 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -37.41 372.51 -8.71 -46.12 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.77 Total: 2.60 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.38 Total: -2.92 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.12 Total: -44.64 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.17 Total: -19.33 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.41 -8.71 -46.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685168456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.983 kcal (2) G-P(sol) polarization free energy of solvation -37.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds