Wall clock time and date at job start Tue Mar 31 2020 20:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.99724 * 2 1 4 4 C 1.54325 * 109.88225 * 238.90541 * 2 1 3 5 5 H 1.08992 * 110.72143 * 336.75021 * 4 2 1 6 6 N 1.46506 * 110.72084 * 100.02722 * 4 2 1 7 7 C 1.34777 * 119.99568 * 199.97758 * 6 4 2 8 8 O 1.21279 * 120.00095 * 359.97438 * 7 6 4 9 9 C 1.50705 * 119.99797 * 179.97438 * 7 6 4 10 10 S 1.80992 * 109.47235 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00184 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99706 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00095 * 179.97438 * 11 10 9 14 14 N 1.31623 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99847 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47206 * 90.00618 * 15 13 11 17 17 H 1.48506 * 109.47295 * 209.99986 * 15 13 11 18 18 H 1.48501 * 109.47259 * 330.00235 * 15 13 11 19 19 C 1.55160 * 102.94008 * 218.38514 * 4 2 1 20 20 C 1.54908 * 101.61466 * 35.48262 * 19 4 2 21 21 N 1.47020 * 109.88342 * 121.09482 * 2 1 3 22 22 C 1.34777 * 125.64671 * 298.41266 * 21 2 1 23 23 O 1.21626 * 120.00183 * 354.45767 * 22 21 2 24 24 C 1.47264 * 119.99825 * 174.46320 * 22 21 2 25 25 C 1.46693 * 126.94204 * 352.85082 * 24 22 21 26 26 C 1.34489 * 106.32847 * 179.89366 * 25 24 22 27 27 N 1.36441 * 108.85961 * 0.37657 * 26 25 24 28 28 H 0.97001 * 124.85317 * 179.77192 * 27 26 25 29 29 C 1.34657 * 110.29830 * 359.74942 * 27 26 25 30 30 H 1.09000 * 109.46976 * 181.09567 * 1 2 3 31 31 H 1.09000 * 109.47128 * 301.09748 * 1 2 3 32 32 H 1.09000 * 109.46969 * 61.09618 * 1 2 3 33 33 H 0.96996 * 119.99872 * 19.97238 * 6 4 2 34 34 H 1.09008 * 109.46781 * 299.99841 * 9 7 6 35 35 H 1.09002 * 109.47176 * 59.99227 * 9 7 6 36 36 H 0.96999 * 120.00181 * 179.97438 * 14 13 11 37 37 H 1.09004 * 111.00414 * 153.57528 * 19 4 2 38 38 H 1.09000 * 111.00863 * 277.38737 * 19 4 2 39 39 H 1.09003 * 110.36400 * 81.84762 * 20 19 4 40 40 H 1.09001 * 110.36648 * 204.16564 * 20 19 4 41 41 H 1.08000 * 126.83092 * 0.02562 * 25 24 22 42 42 H 1.07997 * 125.56680 * 180.09415 * 26 25 24 43 43 H 1.08006 * 125.80351 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3052 -1.4459 -1.6182 6 7 2.4555 0.1961 -2.2876 7 6 2.5559 -0.2160 -3.5668 8 8 2.3150 -1.3696 -3.8530 9 6 2.9675 0.7569 -4.6417 10 16 3.0107 -0.0922 -6.2396 11 6 3.5052 1.2403 -7.2809 12 1 3.6808 2.2189 -6.8590 13 6 3.6702 1.0321 -8.6433 14 7 3.4567 -0.1606 -9.1574 15 14 4.1952 2.4447 -9.7471 16 1 5.6775 2.4865 -9.8263 17 1 3.6323 2.2459 -11.1069 18 1 3.6931 3.7245 -9.1858 19 6 3.2877 -1.5141 -0.6924 20 6 2.8156 -1.8793 0.7371 21 7 2.0300 -0.7140 1.1839 22 6 1.8071 -0.3621 2.4657 23 8 1.2275 0.6767 2.7192 24 6 2.2654 -1.2354 3.5593 25 6 2.8433 -2.5778 3.4325 26 6 3.1147 -2.9923 4.6828 27 7 2.7422 -2.0171 5.5613 28 1 2.8320 -2.0758 6.5254 29 6 2.2327 -0.9613 4.8989 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8997 33 1 2.6485 1.1187 -2.0586 34 1 2.2496 1.5761 -4.6845 35 1 3.9572 1.1526 -4.4140 36 1 3.5716 -0.3060 -10.1095 37 1 3.4853 -2.4110 -1.2796 38 1 4.1657 -0.8689 -0.6611 39 1 2.1901 -2.7716 0.7136 40 1 3.6732 -2.0332 1.3921 41 1 3.0182 -3.1235 2.5170 42 1 3.5514 -3.9437 4.9482 43 1 1.8616 -0.0522 5.3488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001685168456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:48 Heat of formation + Delta-G solvation = -42.183038 kcal Electronic energy + Delta-G solvation = -25908.980952 eV Core-core repulsion = 22080.306322 eV Total energy + Delta-G solvation = -3828.674630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11985 -41.24836 -40.16550 -38.39483 -35.32843 -34.56783 -33.03812 -32.20880 -31.37723 -30.28234 -29.85396 -27.66851 -26.42380 -24.95455 -23.15378 -21.84555 -21.71778 -21.33144 -19.99972 -19.78360 -19.01917 -18.06166 -17.65918 -16.91234 -16.86040 -16.85293 -16.36116 -16.01836 -15.80953 -15.13064 -14.86780 -14.81911 -14.67311 -14.59038 -14.40272 -14.30184 -13.89961 -13.82631 -13.51076 -13.30678 -13.14675 -13.07041 -12.88423 -12.77020 -12.59969 -12.40175 -12.24606 -11.82758 -11.69991 -11.12845 -11.00591 -10.90467 -10.25615 -10.12337 -9.85103 -9.64958 -9.22667 -8.63733 -8.33264 -6.10398 0.78748 1.26795 1.43213 1.46413 1.56736 1.59197 1.61606 1.85285 2.28112 2.35057 2.51876 2.57177 3.00900 3.27052 3.34187 3.54442 3.93042 3.96530 4.00152 4.13825 4.18086 4.22047 4.28332 4.33637 4.43831 4.54146 4.54502 4.58337 4.67516 4.72157 4.89606 5.00660 5.02397 5.07587 5.10077 5.18086 5.36297 5.43811 5.48987 5.79265 6.00315 6.21470 6.45260 6.54713 6.70927 7.08416 7.22480 7.24455 8.75773 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.001926 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.095288 B =14538.054706 C =14842.336413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.080 0.920 4 C 0.142 3.858 5 H 0.093 0.907 6 N -0.706 5.706 7 C 0.542 3.458 8 O -0.557 6.557 9 C -0.132 4.132 10 S -0.145 6.145 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.259 1.259 19 C -0.144 4.144 20 C 0.104 3.896 21 N -0.608 5.608 22 C 0.602 3.398 23 O -0.593 6.593 24 C -0.268 4.268 25 C -0.196 4.196 26 C -0.006 4.006 27 N -0.538 5.538 28 H 0.436 0.564 29 C 0.074 3.926 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.415 0.585 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.164 0.836 42 H 0.204 0.796 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 -3.722 32.534 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.098 0.902 4 C 0.036 3.964 5 H 0.111 0.889 6 N -0.360 5.360 7 C 0.328 3.672 8 O -0.434 6.434 9 C -0.283 4.283 10 S 0.082 5.918 11 C -0.695 4.695 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.183 1.183 19 C -0.183 4.183 20 C -0.018 4.018 21 N -0.341 5.341 22 C 0.395 3.605 23 O -0.476 6.476 24 C -0.278 4.278 25 C -0.220 4.220 26 C -0.134 4.134 27 N -0.133 5.133 28 H 0.276 0.724 29 C -0.064 4.064 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.252 0.748 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.181 0.819 42 H 0.221 0.779 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.229 -5.232 32.275 32.697 hybrid contribution 0.472 2.368 -0.290 2.432 sum 0.243 -2.864 31.985 32.114 Atomic orbital electron populations 1.22060 0.94106 1.02567 1.02614 1.21540 0.94915 0.96354 0.83880 0.90185 1.21939 0.97480 0.91044 0.85897 0.88906 1.45678 1.70267 1.14502 1.05526 1.19955 0.76014 0.87989 0.83263 1.90693 1.49897 1.20446 1.82362 1.23384 1.05991 1.01847 0.97055 1.85515 1.90083 1.18235 0.97984 1.23212 1.53415 0.97453 0.95411 0.90007 1.26095 0.94691 0.99465 0.98849 1.70171 1.47184 1.23575 1.13726 0.84979 0.78602 0.77713 0.76846 1.19314 1.20323 1.18341 1.23246 0.97717 1.01743 0.95553 1.22780 0.96188 0.88411 0.94461 1.48234 1.52696 1.29051 1.04137 1.17472 0.77654 0.84157 0.81215 1.90731 1.45818 1.26986 1.84042 1.20330 1.16307 0.98467 0.92708 1.22719 1.05735 0.94574 0.98923 1.22402 1.06022 0.96214 0.88737 1.41711 1.47647 1.13260 1.10694 0.72428 1.21962 0.99535 0.93564 0.91386 0.92052 0.92557 0.90852 0.74773 0.87331 0.87179 0.92007 0.89289 0.89788 0.89592 0.87555 0.81916 0.77944 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.10 71.98 0.65 -2.76 16 2 C 0.14 2.92 3.18 45.34 0.14 3.07 16 3 H 0.08 1.73 7.69 -2.38 -0.02 1.71 16 4 C 0.14 3.18 2.76 46.18 0.13 3.31 16 5 H 0.09 2.40 7.41 -2.39 -0.02 2.38 16 6 N -0.71 -17.38 5.20 -436.90 -2.27 -19.65 16 7 C 0.54 19.09 7.85 87.66 0.69 19.78 16 8 O -0.56 -24.39 15.59 -3.03 -0.05 -24.44 16 9 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 10 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 11 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 12 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.79 5.49 84.86 0.47 1.25 16 14 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 15 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 C -0.14 -2.72 6.76 31.99 0.22 -2.50 16 20 C 0.10 1.60 5.12 86.85 0.44 2.05 16 21 N -0.61 -12.62 3.07 -791.96 -2.43 -15.05 16 22 C 0.60 14.65 7.58 86.62 0.66 15.31 16 23 O -0.59 -18.44 16.18 -4.11 -0.07 -18.51 16 24 C -0.27 -4.95 6.18 -19.04 -0.12 -5.07 16 25 C -0.20 -2.47 9.25 23.62 0.22 -2.25 16 26 C -0.01 -0.04 11.89 83.12 0.99 0.95 16 27 N -0.54 -3.48 5.90 -194.56 -1.15 -4.63 16 28 H 0.44 -0.34 8.96 -92.71 -0.83 -1.17 16 29 C 0.07 1.00 11.70 83.92 0.98 1.98 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.41 7.09 -2.39 -0.02 1.39 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.41 7.86 8.31 -92.71 -0.77 7.09 16 34 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.14 7.75 -2.39 -0.02 1.12 16 40 H 0.11 1.32 5.93 -2.39 -0.01 1.31 16 41 H 0.16 1.60 5.17 -2.91 -0.02 1.59 16 42 H 0.20 0.01 8.06 -2.91 -0.02 -0.01 16 43 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -83.82 372.51 1.20 -82.62 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.54 Total: 18.46 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 6.55 Total: 0.06 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -5.56 Total: -94.66 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.11 Total: -42.94 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -83.82 1.20 -82.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685168456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.433 kcal (2) G-P(sol) polarization free energy of solvation -83.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds