Wall clock time and date at job start Tue Mar 31 2020 20:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.87582 * 2 1 4 4 C 1.54323 * 109.88225 * 238.82361 * 2 1 3 5 5 H 1.09004 * 110.72001 * 336.75017 * 4 2 1 6 6 N 1.46496 * 110.72171 * 100.02743 * 4 2 1 7 7 C 1.34783 * 120.00167 * 205.00012 * 6 4 2 8 8 O 1.21275 * 119.99644 * 359.97438 * 7 6 4 9 9 C 1.50695 * 119.99702 * 179.97438 * 7 6 4 10 10 N 1.46503 * 109.46874 * 180.02562 * 9 7 6 11 11 C 1.34773 * 120.00036 * 180.02562 * 10 9 7 12 12 O 1.21640 * 120.00352 * 359.97438 * 11 10 9 13 13 C 1.47195 * 119.99778 * 180.02562 * 11 10 9 14 14 C 1.44430 * 123.45849 * 179.72637 * 13 11 10 15 15 C 1.32765 * 113.08385 * 179.80712 * 14 13 11 16 16 S 1.75512 * 110.57449 * 0.43977 * 15 14 13 17 17 C 1.36005 * 123.46189 * 0.02562 * 13 11 10 18 18 C 1.55161 * 102.94174 * 218.39207 * 4 2 1 19 19 C 1.54689 * 101.67482 * 35.33480 * 18 4 2 20 20 N 1.47022 * 109.88038 * 121.01716 * 2 1 3 21 21 C 1.36933 * 125.64746 * 298.31961 * 20 2 1 22 22 H 1.08000 * 120.00244 * 341.56033 * 21 20 2 23 23 C 1.38815 * 120.00226 * 161.83030 * 21 20 2 24 24 N 1.31621 * 120.00114 * 157.50222 * 23 21 20 25 25 Si 1.86797 * 119.99698 * 337.50694 * 23 21 20 26 26 H 1.48501 * 109.47238 * 84.53510 * 25 23 21 27 27 H 1.48502 * 109.46933 * 204.53039 * 25 23 21 28 28 H 1.48496 * 109.47317 * 324.53341 * 25 23 21 29 29 H 1.09001 * 109.47362 * 300.43662 * 1 2 3 30 30 H 1.08998 * 109.47345 * 60.43769 * 1 2 3 31 31 H 1.09001 * 109.47308 * 180.43757 * 1 2 3 32 32 H 0.96996 * 120.00181 * 24.99686 * 6 4 2 33 33 H 1.08990 * 109.47648 * 299.99990 * 9 7 6 34 34 H 1.09001 * 109.47274 * 60.00558 * 9 7 6 35 35 H 0.97002 * 119.99919 * 359.97438 * 10 9 7 36 36 H 1.08002 * 123.45686 * 359.97438 * 14 13 11 37 37 H 1.07996 * 124.71459 * 180.18342 * 15 14 13 38 38 H 1.08000 * 124.59347 * 359.94042 * 17 13 11 39 39 H 1.09003 * 111.00259 * 153.57930 * 18 4 2 40 40 H 1.08998 * 111.00033 * 277.38677 * 18 4 2 41 41 H 1.09000 * 110.38528 * 204.36448 * 19 18 4 42 42 H 1.08995 * 110.23429 * 82.11674 * 19 18 4 43 43 H 0.97003 * 119.99803 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7513 -1.2416 5 1 1.3051 -1.4483 -1.6162 6 7 2.4555 0.1928 -2.2878 7 6 2.4582 -0.1934 -3.5791 8 8 2.1294 -1.3227 -3.8749 9 6 2.8698 0.7779 -4.6551 10 7 2.7880 0.1219 -5.9625 11 6 3.1120 0.8027 -7.0796 12 8 3.4719 1.9620 -7.0024 13 6 3.0293 0.1436 -8.3931 14 6 3.3526 0.8031 -9.6367 15 6 3.2101 0.0156 -10.6960 16 16 2.6568 -1.5776 -10.2101 17 6 2.6348 -1.1471 -8.5610 18 6 3.2876 -1.5153 -0.6902 19 6 2.8190 -1.8753 0.7394 20 7 2.0300 -0.7124 1.1849 21 6 1.8049 -0.3522 2.4867 22 1 1.4852 0.6524 2.7215 23 6 1.9931 -1.2764 3.5052 24 7 2.2161 -0.8642 4.7351 25 14 1.9301 -3.1053 3.1300 26 1 3.2610 -3.5588 2.6524 27 1 1.5657 -3.8508 4.3615 28 1 0.9135 -3.3600 2.0780 29 1 -0.3634 0.5206 0.8860 30 1 -0.3634 0.5070 -0.8939 31 1 -0.3634 -1.0276 0.0078 32 1 2.7188 1.0959 -2.0512 33 1 2.2040 1.6408 -4.6398 34 1 3.8938 1.1059 -4.4763 35 1 2.5013 -0.8028 -6.0240 36 1 3.6796 1.8306 -9.6983 37 1 3.4034 0.3150 -11.7154 38 1 2.3474 -1.8098 -7.7581 39 1 3.4852 -2.4129 -1.2762 40 1 4.1655 -0.8700 -0.6598 41 1 3.6776 -2.0245 1.3941 42 1 2.1971 -2.7701 0.7181 43 1 2.3480 -1.5101 5.4467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689336598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:27 Heat of formation + Delta-G solvation = -8.292729 kcal Electronic energy + Delta-G solvation = -26010.957883 eV Core-core repulsion = 22183.752847 eV Total energy + Delta-G solvation = -3827.205036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55899 -39.69131 -38.04586 -37.14090 -34.81678 -34.30721 -32.23436 -30.79385 -30.72653 -29.60280 -27.87698 -25.37324 -24.60224 -23.95476 -21.89598 -21.28111 -20.63149 -20.01420 -19.48037 -18.60852 -17.61339 -17.05002 -16.57941 -16.40380 -16.09094 -15.65617 -15.10121 -14.91517 -14.87547 -14.31557 -13.77084 -13.55677 -13.48679 -13.34966 -13.29209 -13.08878 -12.87646 -12.83794 -12.64610 -12.19101 -11.94143 -11.63546 -11.56158 -11.27276 -10.98232 -10.84045 -10.56629 -10.31636 -10.25468 -10.06290 -9.99639 -9.58436 -9.48632 -9.46014 -8.99904 -8.87414 -8.72108 -7.13911 -5.98974 -3.30400 0.32838 1.09213 1.47228 1.60045 2.38853 2.54320 3.02019 3.23400 3.32184 3.46537 3.48221 4.29985 4.42235 4.51114 4.61630 4.80864 4.87225 4.93482 4.99511 5.07667 5.09941 5.15329 5.27189 5.36742 5.51927 5.64088 5.76232 5.81574 5.85999 5.92725 5.97813 6.09257 6.19366 6.32009 6.34967 6.56090 6.66658 6.71479 6.89663 7.13762 7.36489 7.64291 7.85125 8.00722 8.26509 8.77380 9.63685 10.10252 11.16728 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029279 B = 0.001984 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.091417 B =14111.068147 C =14606.540180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.047 0.953 4 C 0.133 3.867 5 H 0.099 0.901 6 N -0.707 5.707 7 C 0.510 3.490 8 O -0.543 6.543 9 C 0.100 3.900 10 N -0.713 5.713 11 C 0.581 3.419 12 O -0.537 6.537 13 C -0.155 4.155 14 C -0.084 4.084 15 C -0.238 4.238 16 S 0.190 5.810 17 C -0.209 4.209 18 C -0.140 4.140 19 C 0.111 3.889 20 N -0.600 5.600 21 C -0.240 4.240 22 H 0.093 0.907 23 C 0.023 3.977 24 N -0.907 5.907 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.302 1.302 28 H -0.276 1.276 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.405 0.595 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.411 0.589 36 H 0.155 0.845 37 H 0.171 0.829 38 H 0.173 0.827 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 0.886 -29.974 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.065 0.935 4 C 0.029 3.971 5 H 0.117 0.883 6 N -0.358 5.358 7 C 0.295 3.705 8 O -0.420 6.420 9 C -0.027 4.027 10 N -0.368 5.368 11 C 0.366 3.634 12 O -0.415 6.415 13 C -0.174 4.174 14 C -0.113 4.113 15 C -0.373 4.373 16 S 0.455 5.545 17 C -0.347 4.347 18 C -0.180 4.180 19 C -0.014 4.014 20 N -0.327 5.327 21 C -0.367 4.367 22 H 0.110 0.890 23 C -0.176 4.176 24 N -0.550 5.550 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.230 1.230 28 H -0.202 1.202 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.240 0.760 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.249 0.751 36 H 0.173 0.827 37 H 0.188 0.812 38 H 0.190 0.810 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.255 -0.427 -30.611 30.640 hybrid contribution 0.209 0.139 1.016 1.047 sum 1.464 -0.288 -29.595 29.632 Atomic orbital electron populations 1.22208 0.97112 1.01560 1.00632 1.21090 0.92961 0.95293 0.85883 0.93490 1.22195 0.97200 0.91057 0.86674 0.88255 1.45924 1.67577 1.16600 1.05692 1.20410 0.77729 0.88483 0.83902 1.90686 1.48557 1.20611 1.82168 1.21096 1.04288 0.95379 0.81959 1.45530 1.69096 1.17194 1.04956 1.17547 0.77009 0.85717 0.83088 1.90809 1.47113 1.16522 1.87046 1.20240 1.08822 0.93823 0.94476 1.21139 0.99696 1.01214 0.89253 1.25549 1.10601 0.97627 1.03508 1.83153 1.62248 1.12499 0.96570 1.25795 1.05511 0.99852 1.03547 1.23105 0.97585 1.00137 0.97169 1.21916 0.95284 0.91213 0.93009 1.44794 1.57292 1.29095 1.01475 1.18564 1.42661 0.96865 0.78560 0.88954 1.24985 1.00046 0.97702 0.94848 1.69836 1.50491 1.34026 1.00658 0.87002 0.78210 0.87421 0.76167 1.21214 1.23032 1.20191 0.91872 0.94058 0.93051 0.76037 0.87982 0.87984 0.75083 0.82724 0.81192 0.80980 0.91233 0.90843 0.91874 0.95496 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.14 37.16 0.34 -2.35 16 2 C 0.16 2.79 3.48 -66.95 -0.23 2.55 16 3 H 0.05 0.81 7.72 -51.93 -0.40 0.41 16 4 C 0.13 2.06 2.85 -66.10 -0.19 1.87 16 5 H 0.10 1.65 7.26 -51.93 -0.38 1.28 16 6 N -0.71 -8.31 5.18 -52.03 -0.27 -8.58 16 7 C 0.51 5.99 7.90 -10.98 -0.09 5.91 16 8 O -0.54 -8.02 15.31 5.56 0.09 -7.94 16 9 C 0.10 0.95 6.15 -5.19 -0.03 0.92 16 10 N -0.71 -7.15 5.50 -62.64 -0.34 -7.50 16 11 C 0.58 6.53 7.79 -12.62 -0.10 6.43 16 12 O -0.54 -7.57 16.80 5.24 0.09 -7.48 16 13 C -0.16 -1.44 5.98 -104.63 -0.63 -2.07 16 14 C -0.08 -0.69 10.10 -39.02 -0.39 -1.08 16 15 C -0.24 -1.44 11.12 28.86 0.32 -1.12 16 16 S 0.19 1.07 23.02 -107.50 -2.48 -1.40 16 17 C -0.21 -1.52 10.38 29.93 0.31 -1.21 16 18 C -0.14 -2.33 6.76 -24.70 -0.17 -2.49 16 19 C 0.11 2.34 4.68 -2.65 -0.01 2.33 16 20 N -0.60 -13.67 2.94 -162.72 -0.48 -14.14 16 21 C -0.24 -6.49 10.17 -15.06 -0.15 -6.64 16 22 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 23 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 24 N -0.91 -27.39 13.97 55.49 0.78 -26.61 16 25 Si 0.88 22.24 24.27 -169.99 -4.13 18.12 16 26 H -0.29 -6.93 6.49 56.52 0.37 -6.57 16 27 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 28 H -0.28 -6.89 6.66 56.52 0.38 -6.52 16 29 H 0.06 1.17 8.03 -51.93 -0.42 0.76 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.40 3.77 8.37 -40.82 -0.34 3.43 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.41 3.88 5.93 -40.82 -0.24 3.64 16 36 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.17 1.01 7.01 -52.49 -0.37 0.64 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.42 6.64 -51.93 -0.34 1.08 16 42 H 0.03 0.60 5.59 -51.93 -0.29 0.31 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -33.80 367.06 -8.11 -41.90 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.78 Total: 4.51 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.11 Total: 3.60 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.32 Total: -56.84 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.17 Total: -15.42 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.13 Total: 18.12 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.48 Total: -1.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.80 -8.11 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689336598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.611 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds