Wall clock time and date at job start Tue Mar 31 2020 20:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.87582 * 2 1 4 4 C 1.54323 * 109.88225 * 238.82361 * 2 1 3 5 5 H 1.09004 * 110.72001 * 336.75017 * 4 2 1 6 6 N 1.46496 * 110.72171 * 100.02743 * 4 2 1 7 7 C 1.34783 * 120.00167 * 205.00012 * 6 4 2 8 8 O 1.21275 * 119.99644 * 359.97438 * 7 6 4 9 9 C 1.50695 * 119.99702 * 179.97438 * 7 6 4 10 10 N 1.46503 * 109.46874 * 180.02562 * 9 7 6 11 11 C 1.34773 * 120.00036 * 180.02562 * 10 9 7 12 12 O 1.21640 * 120.00352 * 359.97438 * 11 10 9 13 13 C 1.47195 * 119.99778 * 180.02562 * 11 10 9 14 14 C 1.44430 * 123.45849 * 179.72637 * 13 11 10 15 15 C 1.32765 * 113.08385 * 179.80712 * 14 13 11 16 16 S 1.75512 * 110.57449 * 0.43977 * 15 14 13 17 17 C 1.36005 * 123.46189 * 0.02562 * 13 11 10 18 18 C 1.55161 * 102.94174 * 218.39207 * 4 2 1 19 19 C 1.54689 * 101.67482 * 35.33480 * 18 4 2 20 20 N 1.47022 * 109.88038 * 121.01716 * 2 1 3 21 21 C 1.36933 * 125.64746 * 298.31961 * 20 2 1 22 22 H 1.08000 * 120.00244 * 341.56033 * 21 20 2 23 23 C 1.38815 * 120.00226 * 161.83030 * 21 20 2 24 24 N 1.31621 * 120.00114 * 157.50222 * 23 21 20 25 25 Si 1.86797 * 119.99698 * 337.50694 * 23 21 20 26 26 H 1.48501 * 109.47238 * 84.53510 * 25 23 21 27 27 H 1.48502 * 109.46933 * 204.53039 * 25 23 21 28 28 H 1.48496 * 109.47317 * 324.53341 * 25 23 21 29 29 H 1.09001 * 109.47362 * 300.43662 * 1 2 3 30 30 H 1.08998 * 109.47345 * 60.43769 * 1 2 3 31 31 H 1.09001 * 109.47308 * 180.43757 * 1 2 3 32 32 H 0.96996 * 120.00181 * 24.99686 * 6 4 2 33 33 H 1.08990 * 109.47648 * 299.99990 * 9 7 6 34 34 H 1.09001 * 109.47274 * 60.00558 * 9 7 6 35 35 H 0.97002 * 119.99919 * 359.97438 * 10 9 7 36 36 H 1.08002 * 123.45686 * 359.97438 * 14 13 11 37 37 H 1.07996 * 124.71459 * 180.18342 * 15 14 13 38 38 H 1.08000 * 124.59347 * 359.94042 * 17 13 11 39 39 H 1.09003 * 111.00259 * 153.57930 * 18 4 2 40 40 H 1.08998 * 111.00033 * 277.38677 * 18 4 2 41 41 H 1.09000 * 110.38528 * 204.36448 * 19 18 4 42 42 H 1.08995 * 110.23429 * 82.11674 * 19 18 4 43 43 H 0.97003 * 119.99803 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7513 -1.2416 5 1 1.3051 -1.4483 -1.6162 6 7 2.4555 0.1928 -2.2878 7 6 2.4582 -0.1934 -3.5791 8 8 2.1294 -1.3227 -3.8749 9 6 2.8698 0.7779 -4.6551 10 7 2.7880 0.1219 -5.9625 11 6 3.1120 0.8027 -7.0796 12 8 3.4719 1.9620 -7.0024 13 6 3.0293 0.1436 -8.3931 14 6 3.3526 0.8031 -9.6367 15 6 3.2101 0.0156 -10.6960 16 16 2.6568 -1.5776 -10.2101 17 6 2.6348 -1.1471 -8.5610 18 6 3.2876 -1.5153 -0.6902 19 6 2.8190 -1.8753 0.7394 20 7 2.0300 -0.7124 1.1849 21 6 1.8049 -0.3522 2.4867 22 1 1.4852 0.6524 2.7215 23 6 1.9931 -1.2764 3.5052 24 7 2.2161 -0.8642 4.7351 25 14 1.9301 -3.1053 3.1300 26 1 3.2610 -3.5588 2.6524 27 1 1.5657 -3.8508 4.3615 28 1 0.9135 -3.3600 2.0780 29 1 -0.3634 0.5206 0.8860 30 1 -0.3634 0.5070 -0.8939 31 1 -0.3634 -1.0276 0.0078 32 1 2.7188 1.0959 -2.0512 33 1 2.2040 1.6408 -4.6398 34 1 3.8938 1.1059 -4.4763 35 1 2.5013 -0.8028 -6.0240 36 1 3.6796 1.8306 -9.6983 37 1 3.4034 0.3150 -11.7154 38 1 2.3474 -1.8098 -7.7581 39 1 3.4852 -2.4129 -1.2762 40 1 4.1655 -0.8700 -0.6598 41 1 3.6776 -2.0245 1.3941 42 1 2.1971 -2.7701 0.7181 43 1 2.3480 -1.5101 5.4467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689336598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:26 Heat of formation + Delta-G solvation = -33.650057 kcal Electronic energy + Delta-G solvation = -26012.057459 eV Core-core repulsion = 22183.752847 eV Total energy + Delta-G solvation = -3828.304612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48678 -40.67652 -39.41300 -37.77411 -35.83898 -35.49958 -34.09833 -32.27123 -31.62838 -30.92861 -28.82270 -26.42234 -25.87063 -25.53752 -22.96341 -22.32423 -21.71024 -21.30382 -20.39675 -19.23346 -18.85161 -18.32747 -17.72043 -17.40143 -17.00975 -16.95132 -16.64670 -15.98180 -15.77418 -15.53237 -15.22770 -14.77364 -14.61435 -14.37779 -14.16859 -14.04674 -13.98726 -13.90630 -13.59912 -13.38710 -13.35445 -13.21214 -12.92083 -12.59775 -12.46133 -12.13907 -12.10389 -12.04507 -11.61991 -11.49582 -11.14857 -11.07944 -10.81158 -10.38026 -10.10175 -9.99811 -9.37390 -9.08142 -8.16737 -5.43050 -0.23505 0.61629 0.96632 0.98466 1.29974 1.39152 1.44464 1.46481 1.66664 2.28179 2.34974 2.41444 3.03651 3.27059 3.57673 3.65901 3.74086 3.84104 3.94278 4.12479 4.28995 4.31072 4.31547 4.35983 4.43414 4.47091 4.53560 4.73369 4.80557 4.83648 4.88056 4.98700 5.05810 5.12296 5.15494 5.17875 5.27900 5.35290 5.52148 5.70239 6.11961 6.36256 6.42752 6.75671 7.05366 7.07976 7.54448 8.09481 9.02712 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029279 B = 0.001984 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.091417 B =14111.068147 C =14606.540180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.149 3.851 3 H 0.060 0.940 4 C 0.151 3.849 5 H 0.093 0.907 6 N -0.697 5.697 7 C 0.518 3.482 8 O -0.570 6.570 9 C 0.105 3.895 10 N -0.709 5.709 11 C 0.580 3.420 12 O -0.574 6.574 13 C -0.183 4.183 14 C -0.108 4.108 15 C -0.233 4.233 16 S 0.238 5.762 17 C -0.211 4.211 18 C -0.128 4.128 19 C 0.103 3.897 20 N -0.617 5.617 21 C -0.220 4.220 22 H 0.066 0.934 23 C -0.037 4.037 24 N -0.955 5.955 25 Si 0.939 3.061 26 H -0.272 1.272 27 H -0.311 1.311 28 H -0.272 1.272 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.419 0.581 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.414 0.586 36 H 0.149 0.851 37 H 0.195 0.805 38 H 0.184 0.816 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.021 0.979 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 0.073 -33.387 33.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.078 0.922 4 C 0.045 3.955 5 H 0.111 0.889 6 N -0.349 5.349 7 C 0.304 3.696 8 O -0.449 6.449 9 C -0.022 4.022 10 N -0.364 5.364 11 C 0.367 3.633 12 O -0.455 6.455 13 C -0.202 4.202 14 C -0.137 4.137 15 C -0.367 4.367 16 S 0.504 5.496 17 C -0.350 4.350 18 C -0.167 4.167 19 C -0.022 4.022 20 N -0.343 5.343 21 C -0.348 4.348 22 H 0.084 0.916 23 C -0.231 4.231 24 N -0.602 5.602 25 Si 0.768 3.232 26 H -0.198 1.198 27 H -0.240 1.240 28 H -0.198 1.198 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.257 0.743 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.253 0.747 36 H 0.166 0.834 37 H 0.213 0.787 38 H 0.201 0.799 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.375 -1.236 -34.083 34.133 hybrid contribution 0.143 0.427 1.948 1.999 sum 1.518 -0.809 -32.135 32.181 Atomic orbital electron populations 1.22122 0.96424 1.00985 1.01322 1.21296 0.93502 0.95679 0.85217 0.92190 1.21770 0.96395 0.90983 0.86346 0.88865 1.45697 1.67483 1.16734 1.05007 1.20669 0.76719 0.88271 0.83906 1.90685 1.49713 1.21967 1.82540 1.21131 1.05324 0.94882 0.80891 1.45533 1.68626 1.17297 1.04945 1.17853 0.76225 0.85323 0.83898 1.90779 1.49084 1.18043 1.87606 1.20224 1.11226 0.94820 0.93931 1.21185 1.01308 1.01526 0.89664 1.25890 1.08969 0.97678 1.04201 1.83036 1.60525 1.11354 0.94681 1.26036 1.04397 0.99308 1.05275 1.23018 0.98270 1.01212 0.94187 1.21971 0.94294 0.90430 0.95468 1.44873 1.58215 1.29939 1.01315 1.18496 1.39998 0.95633 0.80701 0.91640 1.25556 1.01345 1.01361 0.94847 1.69953 1.53503 1.35016 1.01692 0.86067 0.78763 0.82887 0.75456 1.19786 1.23989 1.19768 0.93928 0.90638 0.94191 0.74318 0.86588 0.86697 0.74679 0.83354 0.78743 0.79853 0.89686 0.89625 0.93704 0.96170 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.14 71.98 0.66 -4.27 16 2 C 0.15 5.08 3.48 45.34 0.16 5.24 16 3 H 0.06 1.92 7.72 -2.39 -0.02 1.90 16 4 C 0.15 4.24 2.85 46.18 0.13 4.38 16 5 H 0.09 2.84 7.26 -2.38 -0.02 2.82 16 6 N -0.70 -14.12 5.18 -436.92 -2.26 -16.38 16 7 C 0.52 10.66 7.90 87.65 0.69 11.35 16 8 O -0.57 -15.32 15.31 -3.02 -0.05 -15.37 16 9 C 0.10 1.72 6.15 85.63 0.53 2.25 16 10 N -0.71 -13.03 5.50 -470.34 -2.59 -15.61 16 11 C 0.58 12.55 7.79 86.60 0.67 13.23 16 12 O -0.57 -16.01 16.80 -4.16 -0.07 -16.08 16 13 C -0.18 -3.23 5.98 -19.87 -0.12 -3.34 16 14 C -0.11 -1.68 10.10 22.67 0.23 -1.45 16 15 C -0.23 -2.31 11.12 66.64 0.74 -1.57 16 16 S 0.24 2.05 23.02 -56.49 -1.30 0.75 16 17 C -0.21 -2.67 10.38 67.30 0.70 -1.98 16 18 C -0.13 -3.88 6.76 31.91 0.22 -3.66 16 19 C 0.10 4.21 4.68 86.78 0.41 4.62 16 20 N -0.62 -27.68 2.94 -668.72 -1.97 -29.65 16 21 C -0.22 -12.08 10.17 84.03 0.85 -11.22 16 22 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 23 C -0.04 -2.12 5.43 84.86 0.46 -1.66 16 24 N -0.95 -59.45 13.97 21.65 0.30 -59.15 16 25 Si 0.94 46.64 24.27 68.60 1.67 48.31 16 26 H -0.27 -12.75 6.49 99.48 0.65 -12.10 16 27 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 28 H -0.27 -13.15 6.66 99.48 0.66 -12.49 16 29 H 0.04 1.56 8.03 -2.39 -0.02 1.54 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.42 6.32 8.37 -92.71 -0.78 5.55 16 33 H 0.12 1.65 8.14 -2.39 -0.02 1.64 16 34 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 7.06 5.93 -92.71 -0.55 6.51 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.20 0.83 8.06 -2.91 -0.02 0.80 16 38 H 0.18 1.75 7.01 -2.91 -0.02 1.73 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.04 1.98 6.64 -2.39 -0.02 1.96 16 42 H 0.02 0.87 5.59 -2.39 -0.01 0.86 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -74.63 367.06 -0.31 -74.94 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.37 Total: 16.33 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.33 Total: 11.91 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -6.51 Total: -120.79 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.12 Total: -31.44 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.67 Total: 48.31 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.30 Total: 0.75 kcal Total: -74.63 -0.31 -74.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689336598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.290 kcal (2) G-P(sol) polarization free energy of solvation -74.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds