Wall clock time and date at job start Tue Mar 31 2020 20:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.36858 * 2 1 4 4 C 1.54378 * 110.41450 * 237.64773 * 2 1 3 5 5 H 1.08999 * 110.32293 * 336.26934 * 4 2 1 6 6 N 1.46507 * 110.32259 * 98.47221 * 4 2 1 7 7 C 1.34774 * 119.99703 * 205.00331 * 6 4 2 8 8 O 1.21697 * 120.00600 * 359.97438 * 7 6 4 9 9 C 1.46585 * 119.99474 * 180.02562 * 7 6 4 10 10 C 1.36654 * 125.45443 * 179.71633 * 9 7 6 11 11 C 1.37470 * 113.29644 * 179.83394 * 10 9 7 12 12 C 1.33822 * 115.09964 * 0.45973 * 11 10 9 13 13 S 1.70613 * 110.95301 * 359.74313 * 12 11 10 14 14 C 1.54258 * 105.06304 * 217.36934 * 4 2 1 15 15 C 1.54382 * 105.06228 * 359.97438 * 14 4 2 16 16 N 1.48559 * 110.41220 * 122.47403 * 2 1 3 17 17 C 1.46899 * 111.00103 * 277.81941 * 16 2 1 18 18 C 1.50703 * 109.47163 * 169.99711 * 17 16 2 19 19 O 1.21297 * 120.00105 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00238 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00120 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00246 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00014 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00202 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00115 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47014 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47262 * 119.99944 * 25 23 21 28 28 H 1.48503 * 109.46665 * 239.99838 * 25 23 21 29 29 H 1.09002 * 109.47153 * 182.34991 * 1 2 3 30 30 H 1.09001 * 109.46832 * 62.35182 * 1 2 3 31 31 H 1.09004 * 109.47261 * 302.35163 * 1 2 3 32 32 H 0.97003 * 119.99770 * 25.00503 * 6 4 2 33 33 H 1.08000 * 123.35075 * 0.02562 * 10 9 7 34 34 H 1.07998 * 122.45409 * 180.22292 * 11 10 9 35 35 H 1.07996 * 124.52362 * 179.72569 * 12 11 10 36 36 H 1.08994 * 110.32796 * 118.89484 * 14 4 2 37 37 H 1.09007 * 110.32578 * 241.10835 * 14 4 2 38 38 H 1.09001 * 110.41404 * 142.62920 * 15 14 4 39 39 H 1.09005 * 110.41200 * 265.07664 * 15 14 4 40 40 H 1.08993 * 109.47633 * 289.99770 * 17 16 2 41 41 H 1.09002 * 109.46977 * 49.99974 * 17 16 2 42 42 H 0.96997 * 119.99832 * 0.02562 * 20 18 17 43 43 H 0.96997 * 120.00115 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 1 1.3236 -1.4862 -1.5776 6 7 2.4356 0.1563 -2.2926 7 6 2.4425 -0.2600 -3.5744 8 8 2.1441 -1.4089 -3.8428 9 6 2.8104 0.6710 -4.6453 10 6 2.8599 0.3678 -5.9769 11 6 3.2326 1.4320 -6.7632 12 6 3.4895 2.5655 -6.0999 13 16 3.2661 2.3544 -4.4217 14 6 3.3178 -1.5181 -0.7070 15 6 3.4295 -1.1302 0.7831 16 7 2.0481 -0.7476 1.1746 17 6 2.0569 0.0988 2.3752 18 6 2.3502 -0.7496 3.5858 19 8 2.5344 -1.9419 3.4606 20 7 2.4090 -0.1833 4.8074 21 6 2.6764 -0.9550 5.9085 22 1 2.8396 -2.0167 5.7972 23 6 2.7364 -0.3713 7.1680 24 7 2.5374 0.9206 7.3037 25 14 3.1015 -1.4226 8.6683 26 1 3.2858 -2.8354 8.2497 27 1 4.3408 -0.9347 9.3250 28 1 1.9675 -1.3335 9.6229 29 1 -0.3633 -1.0268 0.0421 30 1 -0.3633 0.4769 -0.9103 31 1 -0.3634 0.5499 0.8682 32 1 2.6738 1.0720 -2.0787 33 1 2.6263 -0.6096 -6.3724 34 1 3.3158 1.3578 -7.8374 35 1 3.7974 3.4904 -6.5647 36 1 3.1862 -2.5952 -0.8093 37 1 4.2043 -1.1908 -1.2504 38 1 3.7694 -1.9814 1.3731 39 1 4.1079 -0.2859 0.9064 40 1 2.8251 0.8653 2.2740 41 1 1.0828 0.5739 2.4920 42 1 2.2621 0.7702 4.9075 43 1 2.5797 1.3282 8.1829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691639213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:18 Heat of formation + Delta-G solvation = -27.307779 kcal Electronic energy + Delta-G solvation = -26111.992881 eV Core-core repulsion = 22283.963291 eV Total energy + Delta-G solvation = -3828.029590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.39088 -39.10020 -37.95087 -37.42442 -34.57907 -33.81809 -31.56100 -31.29222 -31.06788 -29.87618 -26.64020 -25.78400 -24.69672 -24.12625 -22.08774 -20.84870 -20.60996 -19.57260 -19.14096 -18.71964 -17.87321 -16.75121 -16.21798 -15.96363 -15.67739 -15.40456 -14.90876 -14.72911 -14.53233 -14.22394 -13.89362 -13.78786 -13.44914 -13.30341 -13.19927 -13.16401 -12.72163 -12.44151 -12.21112 -11.89666 -11.70143 -11.50746 -11.43332 -11.36290 -11.25664 -11.13411 -10.82114 -10.63974 -10.33607 -10.28584 -10.21202 -9.49700 -9.42454 -9.18415 -9.02864 -8.54467 -8.04417 -7.93890 -6.40679 -3.81196 0.10317 1.04010 1.44335 2.00767 2.79354 2.92458 3.17047 3.27564 3.34995 3.91578 4.01153 4.24613 4.36423 4.50391 4.60966 4.69144 4.87990 4.99015 5.05477 5.16604 5.23467 5.26057 5.33954 5.42925 5.52148 5.62086 5.66440 5.72965 5.79321 5.87564 5.88846 5.90050 5.94821 6.11712 6.22506 6.28803 6.33545 6.40825 7.07803 7.12544 7.21355 7.56655 7.88657 8.07830 8.63386 9.19895 9.56018 10.08182 10.77273 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.002035 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.470490 B =13754.139089 C =14111.110578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.051 3.949 3 H 0.053 0.947 4 C 0.146 3.854 5 H 0.106 0.894 6 N -0.718 5.718 7 C 0.591 3.409 8 O -0.525 6.525 9 C -0.265 4.265 10 C -0.056 4.056 11 C -0.150 4.150 12 C -0.230 4.230 13 S 0.200 5.800 14 C -0.133 4.133 15 C 0.038 3.962 16 N -0.475 5.475 17 C 0.035 3.965 18 C 0.446 3.554 19 O -0.575 6.575 20 N -0.567 5.567 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.396 0.604 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.391 0.609 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 8.251 -25.644 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.058 4.058 3 H 0.071 0.929 4 C 0.042 3.958 5 H 0.124 0.876 6 N -0.369 5.369 7 C 0.377 3.623 8 O -0.402 6.402 9 C -0.386 4.386 10 C -0.090 4.090 11 C -0.181 4.181 12 C -0.368 4.368 13 S 0.467 5.533 14 C -0.172 4.172 15 C -0.090 4.090 16 N -0.199 5.199 17 C -0.097 4.097 18 C 0.231 3.769 19 O -0.458 6.458 20 N -0.204 5.204 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.187 0.813 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.224 0.776 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.522 7.217 -24.322 25.376 hybrid contribution 0.660 0.705 -0.505 1.089 sum 1.182 7.922 -24.827 26.087 Atomic orbital electron populations 1.21721 0.93076 1.03243 1.01371 1.22877 0.96912 0.95634 0.90398 0.92885 1.21827 0.97493 0.91017 0.85495 0.87605 1.46024 1.70029 1.14927 1.05965 1.16925 0.77239 0.86547 0.81574 1.90850 1.48297 1.18156 1.82944 1.24708 1.16824 0.98738 0.98323 1.20838 0.96627 1.00691 0.90806 1.20079 1.04166 0.91967 1.01893 1.25347 1.08560 1.03890 0.98986 1.83076 1.61524 1.04314 1.04372 1.22759 0.97180 1.01660 0.95611 1.23178 0.89521 1.01460 0.94853 1.65128 1.18778 1.35454 1.00546 1.22076 1.01920 0.94550 0.91142 1.19672 0.84555 0.88728 0.83906 1.90521 1.54418 1.15338 1.85535 1.41860 1.62462 1.10856 1.05207 1.19742 1.44599 0.94034 0.84196 0.87874 1.25254 0.97571 0.96084 0.99150 1.69620 1.50167 1.09879 1.24814 0.85808 0.77849 0.79974 0.80771 1.19219 1.20820 1.20778 0.91190 0.92499 0.92114 0.76985 0.82800 0.83632 0.81324 0.89998 0.91133 0.88228 0.94290 0.93168 0.89240 0.77573 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.30 37.16 0.35 -1.23 16 2 C 0.05 0.63 2.58 -66.07 -0.17 0.46 16 3 H 0.05 0.58 7.61 -51.93 -0.40 0.18 16 4 C 0.15 1.78 2.96 -66.55 -0.20 1.59 16 5 H 0.11 1.45 7.28 -51.93 -0.38 1.07 16 6 N -0.72 -7.42 5.02 -53.80 -0.27 -7.69 16 7 C 0.59 7.01 7.78 -12.90 -0.10 6.91 16 8 O -0.52 -8.06 16.49 5.19 0.09 -7.97 16 9 C -0.27 -2.52 6.45 -36.79 -0.24 -2.75 16 10 C -0.06 -0.48 10.01 -40.43 -0.40 -0.89 16 11 C -0.15 -0.97 10.15 -41.41 -0.42 -1.39 16 12 C -0.23 -1.34 10.92 29.18 0.32 -1.02 16 13 S 0.20 1.31 22.16 -107.50 -2.38 -1.07 16 14 C -0.13 -1.75 6.79 -25.35 -0.17 -1.92 16 15 C 0.04 0.58 5.92 -2.16 -0.01 0.57 16 16 N -0.47 -7.70 4.66 -223.54 -1.04 -8.75 16 17 C 0.03 0.61 5.27 -4.97 -0.03 0.58 16 18 C 0.45 10.45 7.63 -10.98 -0.08 10.37 16 19 O -0.57 -15.51 14.80 5.54 0.08 -15.43 16 20 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 21 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.70 7.39 -51.93 -0.38 0.31 16 32 H 0.40 3.23 7.49 -40.82 -0.31 2.92 16 33 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 38 H 0.10 1.84 7.24 -51.93 -0.38 1.46 16 39 H 0.04 0.57 7.75 -51.93 -0.40 0.16 16 40 H 0.05 0.79 7.77 -51.93 -0.40 0.38 16 41 H 0.09 1.41 7.23 -51.93 -0.38 1.04 16 42 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -33.20 372.94 -9.47 -42.67 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.80 Total: 11.29 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.40 Total: 3.36 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.65 Total: -54.53 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.38 Total: -1.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.20 -9.47 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691639213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.362 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds