Wall clock time and date at job start Tue Mar 31 2020 20:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46817 * 2 1 4 4 C 1.50692 * 109.47368 * 120.00522 * 2 1 3 5 5 O 1.21281 * 120.00478 * 119.99930 * 4 2 1 6 6 N 1.34778 * 119.99684 * 299.99789 * 4 2 1 7 7 C 1.46505 * 119.99984 * 180.02562 * 6 4 2 8 8 C 1.53943 * 113.73128 * 251.73228 * 7 6 4 9 9 N 1.47966 * 86.17637 * 221.91724 * 8 7 6 10 10 C 1.46893 * 110.99786 * 137.58332 * 9 8 7 11 11 C 1.50697 * 109.47265 * 70.63876 * 10 9 8 12 12 O 1.21291 * 120.00030 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00079 * 179.97438 * 11 10 9 14 14 C 1.37090 * 119.99962 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00194 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00062 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00073 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00073 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47247 * 59.99719 * 18 16 14 20 20 H 1.48501 * 109.47016 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47178 * 299.99640 * 18 16 14 22 22 C 1.47965 * 90.76292 * 24.69094 * 9 8 7 23 23 C 1.50702 * 109.47142 * 240.00788 * 2 1 3 24 24 C 1.33390 * 125.20683 * 119.99826 * 23 2 1 25 25 C 1.38422 * 114.91870 * 180.02562 * 24 23 2 26 26 C 1.33383 * 114.92604 * 0.02562 * 25 24 23 27 27 S 1.75889 * 109.59330 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47098 * 299.99757 * 1 2 3 29 29 H 1.09003 * 109.47484 * 59.99488 * 1 2 3 30 30 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00572 * 0.02562 * 6 4 2 32 32 H 1.08998 * 112.93375 * 23.43412 * 7 6 4 33 33 H 1.08997 * 113.75641 * 336.23256 * 8 7 6 34 34 H 1.08999 * 113.76049 * 107.60280 * 8 7 6 35 35 H 1.09002 * 109.47223 * 190.64041 * 10 9 8 36 36 H 1.09001 * 109.47196 * 310.63773 * 10 9 8 37 37 H 0.97004 * 119.99902 * 0.02562 * 13 11 10 38 38 H 0.96999 * 120.00231 * 179.97438 * 17 16 14 39 39 H 1.09002 * 113.75439 * 220.99279 * 22 9 8 40 40 H 1.08996 * 113.86374 * 89.63987 * 22 9 8 41 41 H 1.08000 * 122.53444 * 359.97438 * 24 23 2 42 42 H 1.08006 * 122.53655 * 179.97438 * 25 24 23 43 43 H 1.07996 * 125.20606 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9404 3.6506 8 6 1.1017 -1.7110 4.4118 9 7 1.7261 -1.1825 5.6447 10 6 0.7053 -0.7358 6.6019 11 6 -0.0119 -1.9345 7.1673 12 8 0.2972 -3.0511 6.8085 13 7 -0.9963 -1.7658 8.0724 14 6 -1.6484 -2.8563 8.5871 15 1 -1.3731 -3.8506 8.2677 16 6 -2.6635 -2.6824 9.5199 17 7 -2.9981 -1.4727 9.9090 18 14 -3.5516 -4.1684 10.2218 19 1 -2.5751 -5.0474 10.9139 20 1 -4.5833 -3.7168 11.1897 21 1 -4.2021 -4.9223 9.1200 22 6 2.2862 -0.0371 4.8938 23 6 2.0323 -0.7102 -1.2306 24 6 2.8024 -0.1644 -2.1731 25 6 3.1394 -1.0121 -3.2141 26 6 2.6427 -2.2462 -3.1174 27 16 1.6919 -2.3856 -1.6442 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1488 0.5384 2.5436 32 1 3.0975 -1.5238 3.4655 33 1 0.0945 -1.3344 4.2335 34 1 1.1763 -2.7937 4.3111 35 1 1.1830 -0.1832 7.4110 36 1 -0.0110 -0.0899 6.0942 37 1 -1.2432 -0.8728 8.3597 38 1 -3.7070 -1.3513 10.5599 39 1 3.3072 0.2174 5.1782 40 1 1.6268 0.8299 4.8556 41 1 3.1369 0.8615 -2.1276 42 1 3.7572 -0.6978 -4.0425 43 1 2.8001 -3.0387 -3.8341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692229867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:57 Heat of formation + Delta-G solvation = 1.528570 kcal Electronic energy + Delta-G solvation = -25810.658705 eV Core-core repulsion = 21983.879553 eV Total energy + Delta-G solvation = -3826.779152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64627 -39.42503 -37.94686 -37.56681 -34.47531 -34.02411 -33.63885 -31.28957 -29.78817 -28.75602 -26.04706 -25.76565 -25.03088 -23.93231 -22.87002 -20.62950 -20.19354 -19.61235 -19.22163 -17.93009 -17.63784 -16.99470 -16.34740 -16.16277 -15.82655 -15.31913 -15.20362 -14.67270 -14.60108 -14.14949 -13.85890 -13.78813 -13.45027 -13.19754 -12.98534 -12.83570 -12.58666 -12.57442 -12.47534 -12.08776 -12.04237 -11.81903 -11.72718 -11.53802 -11.25965 -11.05842 -10.80286 -10.61265 -10.44925 -10.22587 -10.01760 -9.51305 -9.17508 -8.89274 -8.72137 -8.52406 -8.26888 -7.98132 -6.43303 -3.84074 0.79661 1.49100 1.88873 2.41759 2.49785 2.97560 3.19257 3.24924 3.29660 3.86776 3.99164 4.16034 4.18499 4.42243 4.51153 4.64806 4.82841 4.85371 4.88473 4.95968 5.18615 5.20181 5.27257 5.28453 5.35011 5.39170 5.42903 5.63208 5.64473 5.70048 5.76313 5.86721 5.93546 6.06923 6.16397 6.25229 6.25846 6.35112 6.57230 7.11052 7.28560 7.53666 8.01883 8.03779 8.59567 9.16357 9.51935 10.03834 10.74348 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.002011 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.224080 B =13919.095750 C =14439.255392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 H 0.114 0.886 4 C 0.515 3.485 5 O -0.521 6.521 6 N -0.719 5.719 7 C 0.115 3.885 8 C 0.011 3.989 9 N -0.449 5.449 10 C 0.013 3.987 11 C 0.442 3.558 12 O -0.577 6.577 13 N -0.564 5.564 14 C -0.299 4.299 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 0.931 3.069 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.009 4.009 23 C -0.160 4.160 24 C -0.139 4.139 25 C -0.138 4.138 26 C -0.225 4.225 27 S 0.145 5.855 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.400 0.600 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.019 10.055 -23.256 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.131 0.869 4 C 0.299 3.701 5 O -0.396 6.396 6 N -0.370 5.370 7 C 0.010 3.990 8 C -0.119 4.119 9 N -0.172 5.172 10 C -0.119 4.119 11 C 0.227 3.773 12 O -0.461 6.461 13 N -0.201 5.201 14 C -0.429 4.429 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.544 5.544 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.139 4.139 23 C -0.279 4.279 24 C -0.170 4.170 25 C -0.169 4.169 26 C -0.361 4.361 27 S 0.411 5.589 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.234 0.766 32 H 0.142 0.858 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.180 7.018 -22.346 24.809 hybrid contribution -0.690 2.038 -0.293 2.171 sum 7.490 9.056 -22.639 25.508 Atomic orbital electron populations 1.21872 0.91521 1.03541 1.03372 1.19831 0.97726 0.99821 0.89035 0.86861 1.20473 0.80301 0.84799 0.84493 1.90763 1.36886 1.25513 1.86419 1.46036 1.53530 1.32025 1.05435 1.23153 0.99368 0.94498 0.82012 1.24302 0.96266 1.02804 0.88542 1.68388 1.24502 1.17073 1.07194 1.22448 0.94403 0.97244 0.97791 1.19668 0.83600 0.89837 0.84161 1.90536 1.67339 1.25309 1.62906 1.41855 1.31255 1.09811 1.37160 1.19650 1.13890 0.88676 1.20645 0.87980 1.25259 0.97577 0.97911 0.97194 1.69599 1.31123 1.20887 1.32770 0.85914 0.78839 0.80781 0.78675 1.19858 1.20972 1.19910 1.24435 1.02314 0.94481 0.92643 1.23915 1.05941 0.97891 1.00125 1.20035 1.00650 1.01445 0.94854 1.20056 1.03200 0.93195 1.00458 1.25728 1.06405 1.01536 1.02410 1.84448 1.49444 1.09278 1.15778 0.91163 0.90773 0.91598 0.76591 0.85778 0.91320 0.88245 0.88989 0.92846 0.77521 0.91825 0.88598 0.91052 0.84577 0.84566 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.01 37.16 0.33 -0.64 16 2 C -0.04 -0.33 3.10 -92.93 -0.29 -0.62 16 3 H 0.11 0.64 8.09 -51.93 -0.42 0.22 16 4 C 0.51 5.77 7.12 -10.99 -0.08 5.70 16 5 O -0.52 -8.03 14.85 5.56 0.08 -7.94 16 6 N -0.72 -6.91 5.26 -54.94 -0.29 -7.20 16 7 C 0.11 1.41 4.43 -69.62 -0.31 1.10 16 8 C 0.01 0.17 6.56 -2.76 -0.02 0.15 16 9 N -0.45 -7.32 5.95 -239.89 -1.43 -8.75 16 10 C 0.01 0.23 5.31 -4.98 -0.03 0.20 16 11 C 0.44 10.44 7.59 -10.98 -0.08 10.35 16 12 O -0.58 -15.78 15.13 5.55 0.08 -15.70 16 13 N -0.56 -14.24 5.29 -10.97 -0.06 -14.30 16 14 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 15 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 18 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.01 -0.10 7.73 -2.77 -0.02 -0.12 16 23 C -0.16 -1.59 4.60 -36.00 -0.17 -1.75 16 24 C -0.14 -1.23 10.01 -41.21 -0.41 -1.64 16 25 C -0.14 -1.19 10.18 -41.21 -0.42 -1.60 16 26 C -0.22 -2.03 11.23 29.04 0.33 -1.71 16 27 S 0.15 1.56 22.18 -107.50 -2.38 -0.83 16 28 H 0.07 0.37 7.56 -51.93 -0.39 -0.03 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 8.00 -51.93 -0.42 0.13 16 31 H 0.40 2.64 8.15 -40.82 -0.33 2.31 16 32 H 0.12 1.74 7.46 -51.93 -0.39 1.35 16 33 H 0.07 1.04 7.78 -51.93 -0.40 0.63 16 34 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 37 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.66 7.77 -51.93 -0.40 0.25 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -34.47 377.18 -9.95 -44.42 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.94 Total: 10.81 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.40 Total: 1.41 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.05 Total: -53.92 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.17 Total: -23.64 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.38 Total: -0.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.47 -9.95 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692229867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.952 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds