Wall clock time and date at job start Tue Mar 31 2020 20:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46817 * 2 1 4 4 C 1.50692 * 109.47368 * 120.00522 * 2 1 3 5 5 O 1.21281 * 120.00478 * 119.99930 * 4 2 1 6 6 N 1.34778 * 119.99684 * 299.99789 * 4 2 1 7 7 C 1.46505 * 119.99984 * 180.02562 * 6 4 2 8 8 C 1.53943 * 113.73128 * 251.73228 * 7 6 4 9 9 N 1.47966 * 86.17637 * 221.91724 * 8 7 6 10 10 C 1.46893 * 110.99786 * 137.58332 * 9 8 7 11 11 C 1.50697 * 109.47265 * 70.63876 * 10 9 8 12 12 O 1.21291 * 120.00030 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00079 * 179.97438 * 11 10 9 14 14 C 1.37090 * 119.99962 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00194 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00062 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00073 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00073 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47247 * 59.99719 * 18 16 14 20 20 H 1.48501 * 109.47016 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47178 * 299.99640 * 18 16 14 22 22 C 1.47965 * 90.76292 * 24.69094 * 9 8 7 23 23 C 1.50702 * 109.47142 * 240.00788 * 2 1 3 24 24 C 1.33390 * 125.20683 * 119.99826 * 23 2 1 25 25 C 1.38422 * 114.91870 * 180.02562 * 24 23 2 26 26 C 1.33383 * 114.92604 * 0.02562 * 25 24 23 27 27 S 1.75889 * 109.59330 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47098 * 299.99757 * 1 2 3 29 29 H 1.09003 * 109.47484 * 59.99488 * 1 2 3 30 30 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00572 * 0.02562 * 6 4 2 32 32 H 1.08998 * 112.93375 * 23.43412 * 7 6 4 33 33 H 1.08997 * 113.75641 * 336.23256 * 8 7 6 34 34 H 1.08999 * 113.76049 * 107.60280 * 8 7 6 35 35 H 1.09002 * 109.47223 * 190.64041 * 10 9 8 36 36 H 1.09001 * 109.47196 * 310.63773 * 10 9 8 37 37 H 0.97004 * 119.99902 * 0.02562 * 13 11 10 38 38 H 0.96999 * 120.00231 * 179.97438 * 17 16 14 39 39 H 1.09002 * 113.75439 * 220.99279 * 22 9 8 40 40 H 1.08996 * 113.86374 * 89.63987 * 22 9 8 41 41 H 1.08000 * 122.53444 * 359.97438 * 24 23 2 42 42 H 1.08006 * 122.53655 * 179.97438 * 25 24 23 43 43 H 1.07996 * 125.20606 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9404 3.6506 8 6 1.1017 -1.7110 4.4118 9 7 1.7261 -1.1825 5.6447 10 6 0.7053 -0.7358 6.6019 11 6 -0.0119 -1.9345 7.1673 12 8 0.2972 -3.0511 6.8085 13 7 -0.9963 -1.7658 8.0724 14 6 -1.6484 -2.8563 8.5871 15 1 -1.3731 -3.8506 8.2677 16 6 -2.6635 -2.6824 9.5199 17 7 -2.9981 -1.4727 9.9090 18 14 -3.5516 -4.1684 10.2218 19 1 -2.5751 -5.0474 10.9139 20 1 -4.5833 -3.7168 11.1897 21 1 -4.2021 -4.9223 9.1200 22 6 2.2862 -0.0371 4.8938 23 6 2.0323 -0.7102 -1.2306 24 6 2.8024 -0.1644 -2.1731 25 6 3.1394 -1.0121 -3.2141 26 6 2.6427 -2.2462 -3.1174 27 16 1.6919 -2.3856 -1.6442 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1488 0.5384 2.5436 32 1 3.0975 -1.5238 3.4655 33 1 0.0945 -1.3344 4.2335 34 1 1.1763 -2.7937 4.3111 35 1 1.1830 -0.1832 7.4110 36 1 -0.0110 -0.0899 6.0942 37 1 -1.2432 -0.8728 8.3597 38 1 -3.7070 -1.3513 10.5599 39 1 3.3072 0.2174 5.1782 40 1 1.6268 0.8299 4.8556 41 1 3.1369 0.8615 -2.1276 42 1 3.7572 -0.6978 -4.0425 43 1 2.8001 -3.0387 -3.8341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692229867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:57 Heat of formation + Delta-G solvation = -25.457564 kcal Electronic energy + Delta-G solvation = -25811.828912 eV Core-core repulsion = 21983.879553 eV Total energy + Delta-G solvation = -3827.949359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69848 -40.55731 -39.44434 -38.50702 -35.98854 -35.31835 -34.56425 -33.30332 -31.09341 -29.43909 -27.39640 -27.09391 -25.97696 -25.10586 -23.82997 -21.51959 -21.32462 -20.90636 -20.25875 -19.90345 -18.47362 -17.94676 -17.79702 -17.30008 -16.67077 -16.58003 -16.46571 -16.06953 -15.90985 -15.61572 -15.23982 -14.92418 -14.49995 -14.28412 -13.91792 -13.69998 -13.62505 -13.52848 -13.46605 -13.23250 -13.17237 -13.10498 -12.87383 -12.59811 -12.46299 -12.44266 -12.34894 -12.14467 -11.80006 -11.51399 -11.50989 -10.92482 -10.35889 -10.13694 -10.02873 -9.75646 -9.55077 -9.30390 -8.48120 -5.96591 0.10786 0.78675 1.20115 1.38006 1.40183 1.50776 1.56178 1.81434 2.03768 2.14495 2.28848 2.85678 3.18198 3.22267 3.50255 3.55148 3.74555 3.82910 4.05884 4.11763 4.24496 4.27517 4.30456 4.37824 4.43556 4.53946 4.64582 4.70334 4.72004 4.81404 4.82711 4.85450 4.98753 5.19127 5.23535 5.34056 5.39204 5.40031 5.43053 5.63714 5.86004 6.04885 6.51123 6.59209 7.11635 7.21693 7.54637 8.11366 8.68876 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.002011 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.224080 B =13919.095750 C =14439.255392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 H 0.150 0.850 4 C 0.511 3.489 5 O -0.569 6.569 6 N -0.702 5.702 7 C 0.130 3.870 8 C 0.005 3.995 9 N -0.482 5.482 10 C 0.027 3.973 11 C 0.437 3.563 12 O -0.622 6.622 13 N -0.572 5.572 14 C -0.335 4.335 15 H 0.075 0.925 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 0.991 3.009 19 H -0.274 1.274 20 H -0.268 1.268 21 H -0.273 1.273 22 C 0.011 3.989 23 C -0.170 4.170 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.226 4.226 27 S 0.074 5.926 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.419 0.581 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 13.273 -23.949 28.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 H 0.167 0.833 4 C 0.297 3.703 5 O -0.447 6.447 6 N -0.355 5.355 7 C 0.024 3.976 8 C -0.125 4.125 9 N -0.206 5.206 10 C -0.105 4.105 11 C 0.224 3.776 12 O -0.509 6.509 13 N -0.210 5.210 14 C -0.464 4.464 15 H 0.093 0.907 16 C -0.211 4.211 17 N -0.558 5.558 18 Si 0.814 3.186 19 H -0.199 1.199 20 H -0.192 1.192 21 H -0.198 1.198 22 C -0.118 4.118 23 C -0.288 4.288 24 C -0.170 4.170 25 C -0.172 4.172 26 C -0.362 4.362 27 S 0.338 5.662 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.257 0.743 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.182 0.818 42 H 0.180 0.820 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.229 10.308 -23.039 26.548 hybrid contribution -0.649 1.036 -0.145 1.231 sum 7.580 11.344 -23.184 26.901 Atomic orbital electron populations 1.21889 0.90443 1.02609 1.05112 1.19916 0.98453 1.00727 0.86503 0.83279 1.21107 0.79391 0.84194 0.85576 1.90753 1.39172 1.27702 1.87111 1.45835 1.53289 1.32142 1.04242 1.22715 0.97054 0.94414 0.83411 1.24227 0.97712 1.00690 0.89876 1.68345 1.24376 1.20145 1.07686 1.22355 0.94952 0.94300 0.98863 1.20853 0.82644 0.91330 0.82765 1.90512 1.68382 1.27964 1.64004 1.41913 1.31868 1.09374 1.37829 1.19578 1.15738 0.88610 1.22492 0.90703 1.25997 0.97595 1.00713 0.96818 1.69648 1.31311 1.22077 1.32796 0.85027 0.77850 0.77594 0.78095 1.19931 1.19235 1.19815 1.24487 1.03634 0.93780 0.89858 1.24150 1.06722 0.96697 1.01226 1.20428 0.99547 1.02690 0.94288 1.20449 1.02863 0.92820 1.01071 1.25960 1.06056 1.02548 1.01623 1.84692 1.51362 1.11990 1.18136 0.89198 0.89229 0.93901 0.74309 0.87956 0.90791 0.92683 0.86786 0.89642 0.76859 0.91234 0.86913 0.87468 0.81849 0.82013 0.80464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.01 71.98 0.65 -0.99 16 2 C -0.03 -0.47 3.10 -12.29 -0.04 -0.51 16 3 H 0.15 1.05 8.09 -2.38 -0.02 1.03 16 4 C 0.51 10.97 7.12 87.65 0.62 11.59 16 5 O -0.57 -18.01 14.85 -3.03 -0.05 -18.05 16 6 N -0.70 -12.08 5.26 -446.12 -2.35 -14.43 16 7 C 0.13 3.08 4.43 46.56 0.21 3.29 16 8 C 0.01 0.17 6.56 86.41 0.57 0.73 16 9 N -0.48 -15.22 5.95 -912.87 -5.43 -20.65 16 10 C 0.03 0.88 5.31 85.56 0.45 1.34 16 11 C 0.44 20.88 7.59 87.66 0.67 21.54 16 12 O -0.62 -35.46 15.13 -3.06 -0.05 -35.51 16 13 N -0.57 -29.28 5.29 -306.99 -1.62 -30.90 16 14 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 15 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 16 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 17 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 18 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 C 0.01 0.21 7.73 86.40 0.67 0.88 16 23 C -0.17 -3.17 4.60 24.59 0.11 -3.06 16 24 C -0.14 -2.14 10.01 21.22 0.21 -1.93 16 25 C -0.14 -2.16 10.18 21.21 0.22 -1.95 16 26 C -0.23 -3.99 11.23 66.72 0.75 -3.24 16 27 S 0.07 1.65 22.18 -56.49 -1.25 0.40 16 28 H 0.09 0.66 7.56 -2.39 -0.02 0.64 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.70 8.00 -2.38 -0.02 0.68 16 31 H 0.42 3.98 8.15 -92.71 -0.76 3.22 16 32 H 0.10 2.93 7.46 -2.39 -0.02 2.92 16 33 H 0.07 2.21 7.78 -2.39 -0.02 2.20 16 34 H 0.05 2.20 8.09 -2.39 -0.02 2.18 16 35 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.09 2.27 7.69 -2.39 -0.02 2.25 16 37 H 0.40 19.01 7.90 -92.71 -0.73 18.27 16 38 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 1.38 7.77 -2.39 -0.02 1.36 16 41 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -79.67 377.18 -2.50 -82.18 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.44 Total: 31.30 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.37 Total: 9.22 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -9.11 Total: -114.76 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -0.09 Total: -53.56 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.25 Total: 0.40 kcal Total: -79.67 -2.50 -82.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692229867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.718 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds