Wall clock time and date at job start Tue Mar 31 2020 20:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 5 5 O 1.21283 * 119.99488 * 239.99768 * 4 2 1 6 6 N 1.34777 * 120.00290 * 60.00208 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 C 1.53936 * 113.73270 * 251.44776 * 7 6 4 9 9 N 1.47959 * 86.18356 * 221.92311 * 8 7 6 10 10 C 1.46894 * 111.00144 * 137.57854 * 9 8 7 11 11 C 1.50707 * 109.46967 * 70.64492 * 10 9 8 12 12 O 1.21297 * 119.99995 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00228 * 180.02562 * 11 10 9 14 14 C 1.37096 * 119.99806 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00117 * 0.02562 * 14 13 11 16 16 C 1.38950 * 119.99733 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99885 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00101 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46643 * 90.00199 * 18 16 14 20 20 H 1.48493 * 109.47125 * 210.00089 * 18 16 14 21 21 H 1.48498 * 109.46943 * 330.00515 * 18 16 14 22 22 C 1.47964 * 90.75982 * 24.68782 * 9 8 7 23 23 C 1.50701 * 109.47098 * 120.00393 * 2 1 3 24 24 C 1.38420 * 122.53470 * 239.99917 * 23 2 1 25 25 C 1.33393 * 114.92017 * 179.97438 * 24 23 2 26 26 S 1.75890 * 109.58970 * 359.97438 * 25 24 23 27 27 C 1.33378 * 122.53869 * 59.70850 * 23 2 1 28 28 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 29 29 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 31 31 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 32 32 H 1.09006 * 112.94053 * 23.15496 * 7 6 4 33 33 H 1.09003 * 113.75717 * 336.24452 * 8 7 6 34 34 H 1.08999 * 113.75748 * 107.60215 * 8 7 6 35 35 H 1.08997 * 109.47170 * 190.63773 * 10 9 8 36 36 H 1.08995 * 109.47669 * 310.64578 * 10 9 8 37 37 H 0.96994 * 119.99490 * 359.97438 * 13 11 10 38 38 H 0.96997 * 119.99951 * 179.97438 * 17 16 14 39 39 H 1.08996 * 113.75833 * 220.99163 * 22 9 8 40 40 H 1.09000 * 113.85776 * 89.64326 * 22 9 8 41 41 H 1.07995 * 122.54377 * 359.95257 * 24 23 2 42 42 H 1.07993 * 125.20747 * 179.97438 * 25 24 23 43 43 H 1.07998 * 125.20784 * 0.02562 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1900 -0.9439 -3.6508 8 6 3.2781 -0.1715 -4.4182 9 7 2.5670 -0.5871 -5.6473 10 6 2.4824 0.5218 -6.6070 11 6 3.8495 0.7969 -7.1785 12 8 4.8008 0.1347 -6.8210 13 7 4.0154 1.7795 -8.0860 14 6 5.2591 2.0300 -8.6054 15 1 6.1060 1.4398 -8.2877 16 6 5.4300 3.0427 -9.5414 17 7 4.3995 3.7605 -9.9284 18 14 7.1248 3.3846 -10.2487 19 1 7.3270 2.5624 -11.4687 20 1 7.2343 4.8237 -10.5979 21 1 8.1602 3.0393 -9.2418 22 6 1.3034 -0.7314 -4.8911 23 6 2.0323 -0.7105 1.2304 24 6 2.8306 -0.0890 2.1752 25 6 3.1876 -0.8595 3.2039 26 16 2.4970 -2.4650 3.0057 27 6 1.7368 -1.9841 1.4944 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1488 0.5387 -2.5436 32 1 2.4401 -1.9883 -3.4641 33 1 3.2597 0.9041 -4.2425 34 1 4.2744 -0.6026 -4.3202 35 1 1.7991 0.2536 -7.4128 36 1 2.1143 1.4138 -6.1002 37 1 3.2547 2.3093 -8.3716 38 1 4.5188 4.4676 -10.5815 39 1 0.7220 -1.6098 -5.1711 40 1 0.7060 0.1795 -4.8530 41 1 3.1412 0.9414 2.0860 42 1 3.8059 -0.5456 4.0318 43 1 1.1254 -2.6228 0.8742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714947092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:13 Heat of formation + Delta-G solvation = -25.989130 kcal Electronic energy + Delta-G solvation = -25805.338766 eV Core-core repulsion = 21977.366357 eV Total energy + Delta-G solvation = -3827.972409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73021 -40.72973 -39.53518 -38.51655 -35.98623 -35.18790 -33.87839 -33.29246 -31.05059 -29.61889 -27.37720 -27.09649 -26.30852 -25.28229 -23.74630 -21.48694 -21.31934 -20.90178 -19.90450 -19.54304 -18.71673 -17.97920 -17.88069 -17.60141 -16.60759 -16.57946 -16.35307 -16.06925 -15.70150 -15.56631 -15.13488 -14.90776 -14.52127 -14.19351 -14.01410 -13.76528 -13.66480 -13.53146 -13.42547 -13.26207 -13.18292 -13.12349 -12.86822 -12.58145 -12.44717 -12.38484 -12.26095 -12.14445 -11.79883 -11.58715 -11.51722 -10.83755 -10.35723 -10.10933 -10.02635 -9.73875 -9.64944 -9.29568 -8.48306 -5.96729 0.14353 0.78915 1.10797 1.36315 1.40332 1.52714 1.61484 1.69219 2.03711 2.21108 2.29931 2.86798 3.18193 3.22748 3.56189 3.68846 3.79876 3.83176 4.10005 4.13846 4.27858 4.29399 4.32836 4.39619 4.44018 4.50964 4.54390 4.70136 4.75067 4.83196 4.89941 4.91721 4.99616 5.16024 5.29062 5.34637 5.39658 5.45627 5.48943 5.58511 5.86428 6.05203 6.55936 6.59176 7.11698 7.26955 7.54646 8.11345 8.68951 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.001899 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.859551 B =14739.657625 C =15227.052972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 H 0.128 0.872 4 C 0.515 3.485 5 O -0.575 6.575 6 N -0.704 5.704 7 C 0.131 3.869 8 C 0.005 3.995 9 N -0.482 5.482 10 C 0.027 3.973 11 C 0.437 3.563 12 O -0.622 6.622 13 N -0.573 5.573 14 C -0.334 4.334 15 H 0.075 0.925 16 C -0.012 4.012 17 N -0.918 5.918 18 Si 0.991 3.009 19 H -0.272 1.272 20 H -0.268 1.268 21 H -0.275 1.275 22 C 0.011 3.989 23 C -0.101 4.101 24 C -0.138 4.138 25 C -0.217 4.217 26 S 0.082 5.918 27 C -0.194 4.194 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.418 0.582 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.159 0.841 42 H 0.185 0.815 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 -3.110 23.954 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.069 4.069 3 H 0.146 0.854 4 C 0.303 3.697 5 O -0.454 6.454 6 N -0.356 5.356 7 C 0.024 3.976 8 C -0.126 4.126 9 N -0.206 5.206 10 C -0.105 4.105 11 C 0.224 3.776 12 O -0.509 6.509 13 N -0.210 5.210 14 C -0.463 4.463 15 H 0.093 0.907 16 C -0.212 4.212 17 N -0.559 5.559 18 Si 0.815 3.185 19 H -0.197 1.197 20 H -0.193 1.193 21 H -0.200 1.200 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.168 4.168 25 C -0.352 4.352 26 S 0.346 5.654 27 C -0.329 4.329 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.256 0.744 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.176 0.824 42 H 0.202 0.798 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.661 -5.975 24.588 28.756 hybrid contribution 0.396 2.579 -1.364 2.945 sum -13.266 -3.396 23.224 26.961 Atomic orbital electron populations 1.21806 0.89806 1.03045 1.04587 1.20070 0.99076 1.00284 0.87458 0.85406 1.21141 0.79090 0.84015 0.85501 1.90727 1.39092 1.28349 1.87216 1.45860 1.53463 1.32012 1.04313 1.22694 0.93955 0.97439 0.83489 1.24231 0.99070 0.99349 0.89916 1.68341 1.09489 1.35084 1.07660 1.22355 0.94125 0.95189 0.98800 1.20860 0.91713 0.82235 0.82767 1.90513 1.44129 1.52075 1.64147 1.41919 1.10210 1.31199 1.37692 1.19613 0.87615 1.16877 1.22211 0.90712 1.26003 1.02895 0.95409 0.96857 1.69659 1.31597 1.21888 1.32727 0.84959 0.77325 0.77904 0.78339 1.19706 1.19276 1.20041 1.24485 0.92779 1.04638 0.89886 1.18615 1.01113 0.94218 0.97454 1.20319 0.99960 1.02447 0.94087 1.25850 1.08178 0.96090 1.05097 1.84230 1.47725 1.14138 1.19330 1.25438 1.07281 0.99481 1.00748 0.89502 0.92742 0.89935 0.74368 0.88006 0.90794 0.92689 0.86795 0.89643 0.76858 0.91244 0.86953 0.87506 0.82371 0.79803 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.92 71.98 0.64 -0.49 16 2 C -0.05 -0.63 2.97 -12.28 -0.04 -0.67 16 3 H 0.13 1.23 8.03 -2.39 -0.02 1.21 16 4 C 0.52 10.90 7.06 87.66 0.62 11.52 16 5 O -0.58 -18.07 14.84 -3.04 -0.05 -18.12 16 6 N -0.70 -12.03 5.26 -446.11 -2.35 -14.37 16 7 C 0.13 3.07 4.43 46.55 0.21 3.28 16 8 C 0.00 0.15 6.56 86.41 0.57 0.71 16 9 N -0.48 -15.21 5.95 -912.84 -5.43 -20.64 16 10 C 0.03 0.88 5.31 85.56 0.45 1.34 16 11 C 0.44 20.88 7.59 87.66 0.67 21.54 16 12 O -0.62 -35.45 15.13 -3.08 -0.05 -35.50 16 13 N -0.57 -29.28 5.29 -306.97 -1.62 -30.91 16 14 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 15 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 16 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 17 N -0.92 -49.05 13.05 21.66 0.28 -48.76 16 18 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.01 0.21 7.73 86.40 0.67 0.88 16 23 C -0.10 -1.84 4.28 -20.92 -0.09 -1.93 16 24 C -0.14 -2.24 9.92 21.22 0.21 -2.03 16 25 C -0.22 -3.39 11.23 66.72 0.75 -2.64 16 26 S 0.08 1.45 23.34 -56.49 -1.32 0.13 16 27 C -0.19 -3.85 9.27 66.72 0.62 -3.23 16 28 H 0.09 0.36 7.56 -2.38 -0.02 0.34 16 29 H 0.05 0.57 7.73 -2.39 -0.02 0.55 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.42 4.00 8.15 -92.71 -0.76 3.25 16 32 H 0.10 2.91 7.46 -2.38 -0.02 2.89 16 33 H 0.07 2.21 7.78 -2.39 -0.02 2.19 16 34 H 0.05 2.20 8.09 -2.39 -0.02 2.18 16 35 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.09 2.27 7.69 -2.39 -0.02 2.26 16 37 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 38 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 39 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.11 1.38 7.77 -2.39 -0.02 1.36 16 41 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.16 3.08 7.93 -2.91 -0.02 3.06 16 Total: -1.00 -78.63 376.26 -2.38 -81.00 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.43 Total: 32.13 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.55 Total: 9.85 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -9.11 Total: -114.68 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.09 Total: -53.62 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.32 Total: 0.13 kcal Total: -78.63 -2.38 -81.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714947092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.015 kcal (2) G-P(sol) polarization free energy of solvation -78.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds