Wall clock time and date at job start Tue Mar 31 2020 20:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46803 * 2 1 4 4 C 1.50698 * 109.46924 * 119.99891 * 2 1 3 5 5 O 1.21288 * 119.99793 * 120.00109 * 4 2 1 6 6 N 1.34775 * 120.00613 * 299.99611 * 4 2 1 7 7 C 1.46496 * 120.00454 * 179.97438 * 6 4 2 8 8 C 1.53513 * 114.17158 * 154.99995 * 7 6 4 9 9 N 1.47484 * 87.93060 * 87.81542 * 8 7 6 10 10 C 1.46895 * 110.99756 * 138.70311 * 9 8 7 11 11 C 1.50706 * 109.47182 * 170.00145 * 10 9 8 12 12 O 1.21297 * 119.99667 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72734 * 11 10 9 14 14 C 1.37095 * 119.99878 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00160 * 359.97438 * 14 13 11 16 16 C 1.38950 * 120.00380 * 179.97438 * 14 13 11 17 17 N 1.31412 * 119.99401 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00554 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46681 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47048 * 120.00010 * 18 16 14 21 21 H 1.48501 * 109.47100 * 240.00460 * 18 16 14 22 22 C 1.47477 * 87.83167 * 27.01125 * 9 8 7 23 23 C 1.50697 * 109.46872 * 240.00168 * 2 1 3 24 24 C 1.38427 * 122.54099 * 120.00117 * 23 2 1 25 25 C 1.33388 * 114.91857 * 179.97438 * 24 23 2 26 26 S 1.75887 * 109.59473 * 359.97438 * 25 24 23 27 27 C 1.33392 * 122.53684 * 299.70859 * 23 2 1 28 28 H 1.08997 * 109.47469 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46950 * 299.99820 * 1 2 3 30 30 H 1.08991 * 109.46984 * 59.99775 * 1 2 3 31 31 H 0.96999 * 119.99191 * 0.02562 * 6 4 2 32 32 H 1.09001 * 113.25341 * 22.05874 * 7 6 4 33 33 H 1.09005 * 113.47855 * 333.05418 * 8 7 6 34 34 H 1.08997 * 113.53455 * 202.58998 * 8 7 6 35 35 H 1.09001 * 109.47613 * 50.00491 * 10 9 8 36 36 H 1.08998 * 109.47678 * 290.00386 * 10 9 8 37 37 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 38 38 H 0.97004 * 120.00112 * 179.97438 * 17 16 14 39 39 H 1.09000 * 113.48071 * 87.76093 * 22 9 8 40 40 H 1.09004 * 113.47566 * 218.21901 * 22 9 8 41 41 H 1.07994 * 122.53695 * 0.02562 * 24 23 2 42 42 H 1.07999 * 125.19766 * 179.97438 * 25 24 23 43 43 H 1.07996 * 125.20695 * 0.02639 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1947 -0.9409 3.6507 8 6 2.2894 -0.0494 4.8969 9 7 0.8836 -0.3917 5.1830 10 6 0.6827 -0.6354 6.6176 11 6 -0.7925 -0.7386 6.9079 12 8 -1.5973 -0.6211 6.0080 13 7 -1.2174 -0.9673 8.1663 14 6 -2.5594 -1.0616 8.4302 15 1 -3.2762 -0.9523 7.6297 16 6 -2.9974 -1.2980 9.7275 17 7 -2.1253 -1.4315 10.7013 18 14 -4.8260 -1.4258 10.0872 19 1 -5.5921 -1.2407 8.8287 20 1 -5.1261 -2.7641 10.6565 21 1 -5.2133 -0.3749 11.0622 22 6 1.1026 -1.6569 4.4576 23 6 2.0323 -0.7104 -1.2305 24 6 2.8306 -0.0889 -2.1753 25 6 3.1883 -0.8597 -3.2035 26 16 2.4998 -2.4659 -3.0041 27 6 1.7460 -1.9873 -1.4888 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.1489 0.5385 2.5435 32 1 3.0825 -1.5458 3.4663 33 1 2.4411 1.0050 4.6660 34 1 2.9880 -0.4216 5.6462 35 1 1.1086 0.1890 7.1894 36 1 1.1746 -1.5660 6.9006 37 1 -0.5737 -1.0659 8.8852 38 1 -2.4310 -1.5962 11.6071 39 1 1.4846 -2.4591 5.0890 40 1 0.2486 -1.9650 3.8544 41 1 3.1410 0.9416 -2.0862 42 1 3.8061 -0.5455 -4.0317 43 1 1.1423 -2.6288 -0.8639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714947093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:16 Heat of formation + Delta-G solvation = 4.315431 kcal Electronic energy + Delta-G solvation = -25857.258815 eV Core-core repulsion = 22030.600510 eV Total energy + Delta-G solvation = -3826.658305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80334 -39.68779 -37.98617 -37.52482 -34.20087 -33.85798 -33.06057 -31.25159 -29.80880 -28.86273 -25.95457 -25.81464 -25.41928 -23.91677 -23.06099 -20.73931 -19.88056 -19.23995 -18.82192 -17.99948 -17.90344 -17.12900 -16.33994 -16.03218 -15.50808 -15.32965 -15.12605 -14.81312 -14.57184 -14.13235 -13.84205 -13.68704 -13.43819 -13.21822 -13.13683 -12.87208 -12.71463 -12.56844 -12.40741 -12.09517 -11.88265 -11.68607 -11.59362 -11.41641 -11.16596 -11.07510 -10.89980 -10.69123 -10.34881 -10.22463 -9.86616 -9.51299 -9.10161 -8.94597 -8.82790 -8.58516 -8.21677 -7.96253 -6.41985 -3.82651 0.85367 1.48179 1.80291 2.41953 2.51070 3.11397 3.15795 3.26229 3.33478 3.90081 3.99866 4.22988 4.38325 4.43610 4.55266 4.79626 4.84954 4.95253 4.99212 5.01114 5.12240 5.18861 5.36439 5.39140 5.40980 5.51211 5.51312 5.58148 5.65182 5.68487 5.70571 5.82560 5.89691 6.01116 6.17486 6.24685 6.27676 6.44562 6.50950 7.10072 7.44899 7.55055 8.06090 8.13552 8.61949 9.18457 9.54681 10.06932 10.75970 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.001900 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.003521 B =14733.788081 C =15256.753251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 H 0.105 0.895 4 C 0.520 3.480 5 O -0.534 6.534 6 N -0.699 5.699 7 C 0.117 3.883 8 C -0.014 4.014 9 N -0.439 5.439 10 C 0.008 3.992 11 C 0.447 3.553 12 O -0.576 6.576 13 N -0.567 5.567 14 C -0.297 4.297 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.008 4.008 23 C -0.094 4.094 24 C -0.123 4.123 25 C -0.219 4.219 26 S 0.090 5.910 27 C -0.171 4.171 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.409 0.591 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.391 0.609 38 H 0.270 0.730 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.955 3.123 -22.084 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 H 0.123 0.877 4 C 0.306 3.694 5 O -0.410 6.410 6 N -0.350 5.350 7 C 0.010 3.990 8 C -0.144 4.144 9 N -0.161 5.161 10 C -0.125 4.125 11 C 0.232 3.768 12 O -0.459 6.459 13 N -0.205 5.205 14 C -0.427 4.427 15 H 0.121 0.879 16 C -0.181 4.181 17 N -0.544 5.544 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.139 4.139 23 C -0.106 4.106 24 C -0.154 4.154 25 C -0.354 4.354 26 S 0.354 5.646 27 C -0.306 4.306 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.244 0.756 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.224 0.776 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.157 0.843 42 H 0.180 0.820 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.359 1.561 -23.597 26.684 hybrid contribution -0.157 0.973 2.226 2.434 sum 12.202 2.534 -21.372 24.740 Atomic orbital electron populations 1.21824 0.91579 1.03345 1.03263 1.19968 0.97760 0.99844 0.89680 0.87664 1.20509 0.79935 0.84601 0.84386 1.90710 1.37642 1.26046 1.86630 1.45496 1.53194 1.31966 1.04323 1.21948 0.97749 0.94965 0.84296 1.24294 0.92454 1.01535 0.96160 1.68825 1.18892 1.19744 1.08685 1.22509 0.97687 1.01399 0.90857 1.19662 0.89045 0.84319 0.83802 1.90520 1.55471 1.54908 1.44979 1.41881 1.08325 1.63041 1.07214 1.19738 0.82853 1.45684 0.94405 0.87929 1.25258 1.00166 0.97410 0.95221 1.69619 1.34260 1.49554 1.01010 0.85805 0.82271 0.77728 0.78574 1.19238 1.20785 1.20755 1.24365 0.99149 0.93241 0.97104 1.18326 1.01273 0.94067 0.96925 1.20019 0.99911 1.01252 0.94231 1.25488 1.08560 0.96910 1.04490 1.84261 1.47894 1.13162 1.19314 1.25383 1.06293 0.99019 0.99941 0.91812 0.91116 0.91137 0.75568 0.87324 0.89279 0.90171 0.89357 0.92139 0.77568 0.91963 0.90571 0.89195 0.84345 0.82005 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.92 37.16 0.33 -0.82 16 2 C -0.05 -0.43 2.97 -92.92 -0.28 -0.71 16 3 H 0.11 0.70 8.03 -51.93 -0.42 0.29 16 4 C 0.52 6.01 7.05 -10.99 -0.08 5.94 16 5 O -0.53 -8.03 14.81 5.55 0.08 -7.95 16 6 N -0.70 -7.55 5.29 -53.55 -0.28 -7.84 16 7 C 0.12 1.36 4.59 -67.72 -0.31 1.05 16 8 C -0.01 -0.16 7.45 -7.55 -0.06 -0.22 16 9 N -0.44 -6.81 5.82 -246.13 -1.43 -8.24 16 10 C 0.01 0.13 5.30 -4.98 -0.03 0.10 16 11 C 0.45 10.52 7.85 -10.98 -0.09 10.44 16 12 O -0.58 -15.70 16.01 5.54 0.09 -15.61 16 13 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 14 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 15 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 16 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 17 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 18 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.01 -0.12 7.53 -7.56 -0.06 -0.17 16 23 C -0.09 -0.93 4.29 -106.25 -0.46 -1.38 16 24 C -0.12 -1.07 9.92 -41.21 -0.41 -1.48 16 25 C -0.22 -1.81 11.23 29.04 0.33 -1.48 16 26 S 0.09 0.82 23.34 -107.50 -2.51 -1.69 16 27 C -0.17 -1.80 9.25 29.04 0.27 -1.53 16 28 H 0.06 0.57 7.76 -51.93 -0.40 0.17 16 29 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.41 3.95 8.18 -40.82 -0.33 3.62 16 32 H 0.11 1.28 7.45 -51.93 -0.39 0.89 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 35 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 36 H 0.06 0.93 7.30 -51.93 -0.38 0.55 16 37 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.08 1.01 7.42 -51.93 -0.39 0.63 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.16 1.73 7.96 -52.49 -0.42 1.31 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -34.00 377.57 -9.68 -43.69 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.89 Total: 12.40 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.07 Total: 1.75 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -1.05 Total: -54.34 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.17 Total: -23.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.00 -9.68 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714947093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.004 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds