Wall clock time and date at job start Tue Mar 31 2020 20:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46803 * 2 1 4 4 C 1.50698 * 109.46924 * 119.99891 * 2 1 3 5 5 O 1.21288 * 119.99793 * 120.00109 * 4 2 1 6 6 N 1.34775 * 120.00613 * 299.99611 * 4 2 1 7 7 C 1.46496 * 120.00454 * 179.97438 * 6 4 2 8 8 C 1.53513 * 114.17158 * 154.99995 * 7 6 4 9 9 N 1.47484 * 87.93060 * 87.81542 * 8 7 6 10 10 C 1.46895 * 110.99756 * 138.70311 * 9 8 7 11 11 C 1.50706 * 109.47182 * 170.00145 * 10 9 8 12 12 O 1.21297 * 119.99667 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72734 * 11 10 9 14 14 C 1.37095 * 119.99878 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00160 * 359.97438 * 14 13 11 16 16 C 1.38950 * 120.00380 * 179.97438 * 14 13 11 17 17 N 1.31412 * 119.99401 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00554 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46681 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47048 * 120.00010 * 18 16 14 21 21 H 1.48501 * 109.47100 * 240.00460 * 18 16 14 22 22 C 1.47477 * 87.83167 * 27.01125 * 9 8 7 23 23 C 1.50697 * 109.46872 * 240.00168 * 2 1 3 24 24 C 1.38427 * 122.54099 * 120.00117 * 23 2 1 25 25 C 1.33388 * 114.91857 * 179.97438 * 24 23 2 26 26 S 1.75887 * 109.59473 * 359.97438 * 25 24 23 27 27 C 1.33392 * 122.53684 * 299.70859 * 23 2 1 28 28 H 1.08997 * 109.47469 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46950 * 299.99820 * 1 2 3 30 30 H 1.08991 * 109.46984 * 59.99775 * 1 2 3 31 31 H 0.96999 * 119.99191 * 0.02562 * 6 4 2 32 32 H 1.09001 * 113.25341 * 22.05874 * 7 6 4 33 33 H 1.09005 * 113.47855 * 333.05418 * 8 7 6 34 34 H 1.08997 * 113.53455 * 202.58998 * 8 7 6 35 35 H 1.09001 * 109.47613 * 50.00491 * 10 9 8 36 36 H 1.08998 * 109.47678 * 290.00386 * 10 9 8 37 37 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 38 38 H 0.97004 * 120.00112 * 179.97438 * 17 16 14 39 39 H 1.09000 * 113.48071 * 87.76093 * 22 9 8 40 40 H 1.09004 * 113.47566 * 218.21901 * 22 9 8 41 41 H 1.07994 * 122.53695 * 0.02562 * 24 23 2 42 42 H 1.07999 * 125.19766 * 179.97438 * 25 24 23 43 43 H 1.07996 * 125.20695 * 0.02639 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1947 -0.9409 3.6507 8 6 2.2894 -0.0494 4.8969 9 7 0.8836 -0.3917 5.1830 10 6 0.6827 -0.6354 6.6176 11 6 -0.7925 -0.7386 6.9079 12 8 -1.5973 -0.6211 6.0080 13 7 -1.2174 -0.9673 8.1663 14 6 -2.5594 -1.0616 8.4302 15 1 -3.2762 -0.9523 7.6297 16 6 -2.9974 -1.2980 9.7275 17 7 -2.1253 -1.4315 10.7013 18 14 -4.8260 -1.4258 10.0872 19 1 -5.5921 -1.2407 8.8287 20 1 -5.1261 -2.7641 10.6565 21 1 -5.2133 -0.3749 11.0622 22 6 1.1026 -1.6569 4.4576 23 6 2.0323 -0.7104 -1.2305 24 6 2.8306 -0.0889 -2.1753 25 6 3.1883 -0.8597 -3.2035 26 16 2.4998 -2.4659 -3.0041 27 6 1.7460 -1.9873 -1.4888 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.1489 0.5385 2.5435 32 1 3.0825 -1.5458 3.4663 33 1 2.4411 1.0050 4.6660 34 1 2.9880 -0.4216 5.6462 35 1 1.1086 0.1890 7.1894 36 1 1.1746 -1.5660 6.9006 37 1 -0.5737 -1.0659 8.8852 38 1 -2.4310 -1.5962 11.6071 39 1 1.4846 -2.4591 5.0890 40 1 0.2486 -1.9650 3.8544 41 1 3.1410 0.9416 -2.0862 42 1 3.8061 -0.5455 -4.0317 43 1 1.1423 -2.6288 -0.8639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714947093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:16 Heat of formation + Delta-G solvation = -21.726659 kcal Electronic energy + Delta-G solvation = -25858.388085 eV Core-core repulsion = 22030.600510 eV Total energy + Delta-G solvation = -3827.787575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81743 -40.71052 -39.60077 -38.51473 -35.95371 -35.10073 -33.87533 -33.25822 -31.06322 -29.60924 -27.41014 -26.93334 -26.31997 -25.31293 -23.97249 -21.56759 -21.21932 -20.69893 -19.90327 -19.55344 -18.70253 -18.06555 -17.76148 -17.24958 -16.69032 -16.57263 -16.43861 -15.94948 -15.91273 -15.54388 -15.10467 -14.85074 -14.58501 -14.43092 -14.00762 -13.77189 -13.71337 -13.54699 -13.45214 -13.25010 -13.18048 -12.99973 -12.65465 -12.50567 -12.45038 -12.37366 -12.25220 -12.11010 -11.81545 -11.58068 -11.50439 -10.81345 -10.38196 -10.06210 -10.00662 -9.72686 -9.64311 -9.29455 -8.47178 -5.95560 0.15277 0.78998 1.12200 1.35625 1.40639 1.54702 1.60335 1.70571 2.06766 2.26791 2.28954 2.85739 3.19163 3.35357 3.53029 3.70544 3.78652 3.82791 4.09661 4.16550 4.28639 4.30613 4.30978 4.41352 4.49254 4.53210 4.54278 4.65295 4.73542 4.79523 4.84293 4.86658 4.87527 5.16509 5.24451 5.33064 5.40611 5.50366 5.53047 5.59430 5.86784 6.06887 6.57532 6.60960 7.13465 7.24816 7.57431 8.14019 8.70475 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.001900 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.003521 B =14733.788081 C =15256.753251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 H 0.135 0.865 4 C 0.519 3.481 5 O -0.572 6.572 6 N -0.694 5.694 7 C 0.127 3.873 8 C 0.001 3.999 9 N -0.467 5.467 10 C 0.021 3.979 11 C 0.442 3.558 12 O -0.619 6.619 13 N -0.577 5.577 14 C -0.331 4.331 15 H 0.076 0.924 16 C -0.014 4.014 17 N -0.921 5.921 18 Si 0.992 3.008 19 H -0.274 1.274 20 H -0.271 1.271 21 H -0.270 1.270 22 C -0.015 4.015 23 C -0.097 4.097 24 C -0.134 4.134 25 C -0.213 4.213 26 S 0.082 5.918 27 C -0.198 4.198 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.415 0.585 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.164 0.836 42 H 0.189 0.811 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.262 4.560 -22.261 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 H 0.153 0.847 4 C 0.306 3.694 5 O -0.451 6.451 6 N -0.344 5.344 7 C 0.020 3.980 8 C -0.128 4.128 9 N -0.189 5.189 10 C -0.111 4.111 11 C 0.229 3.771 12 O -0.505 6.505 13 N -0.215 5.215 14 C -0.461 4.461 15 H 0.094 0.906 16 C -0.214 4.214 17 N -0.562 5.562 18 Si 0.816 3.184 19 H -0.199 1.199 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.145 4.145 23 C -0.110 4.110 24 C -0.164 4.164 25 C -0.348 4.348 26 S 0.346 5.654 27 C -0.334 4.334 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.252 0.748 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.182 0.818 42 H 0.206 0.794 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.686 3.015 -23.760 27.584 hybrid contribution -0.541 0.513 2.228 2.350 sum 13.144 3.528 -21.531 25.472 Atomic orbital electron populations 1.21798 0.91156 1.02522 1.04140 1.20018 0.97943 1.00797 0.87895 0.84735 1.20996 0.79134 0.84073 0.85155 1.90694 1.39498 1.27728 1.87159 1.45502 1.52937 1.31914 1.04083 1.21842 0.96588 0.94874 0.84713 1.24338 0.90164 1.02522 0.95804 1.68782 1.22320 1.20374 1.07448 1.22402 0.92614 1.03536 0.92566 1.20846 0.91782 0.81942 0.82516 1.90486 1.57653 1.56258 1.46063 1.41958 1.07612 1.63743 1.08174 1.19665 0.83970 1.48012 0.94464 0.90567 1.26022 1.04359 0.96418 0.94574 1.69674 1.35858 1.49269 1.01381 0.84888 0.77106 0.78317 0.78130 1.19916 1.19668 1.19492 1.24421 0.98959 0.93555 0.97569 1.18592 1.01110 0.93907 0.97407 1.20290 0.99720 1.02518 0.93892 1.25865 1.08044 0.95868 1.05057 1.84235 1.48068 1.14424 1.18691 1.25416 1.07476 0.99658 1.00861 0.93526 0.90822 0.89606 0.74779 0.87046 0.87553 0.87709 0.86912 0.89904 0.77022 0.91343 0.89640 0.92257 0.81837 0.79426 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.92 71.98 0.64 -1.50 16 2 C -0.04 -0.71 2.97 -12.29 -0.04 -0.74 16 3 H 0.13 1.42 8.03 -2.39 -0.02 1.40 16 4 C 0.52 11.70 7.05 87.66 0.62 12.32 16 5 O -0.57 -17.26 14.81 -3.05 -0.05 -17.31 16 6 N -0.69 -14.25 5.29 -441.71 -2.33 -16.59 16 7 C 0.13 2.78 4.59 45.44 0.21 2.99 16 8 C 0.00 0.01 7.45 83.57 0.62 0.64 16 9 N -0.47 -13.81 5.82 -932.63 -5.43 -19.24 16 10 C 0.02 0.67 5.30 85.56 0.45 1.12 16 11 C 0.44 21.00 7.85 87.66 0.69 21.69 16 12 O -0.62 -34.72 16.01 -3.08 -0.05 -34.76 16 13 N -0.58 -29.61 5.29 -306.98 -1.62 -31.23 16 14 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 15 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 16 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 17 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 18 Si 0.99 43.18 29.55 68.60 2.03 45.20 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 C -0.01 -0.41 7.53 83.57 0.63 0.22 16 23 C -0.10 -1.85 4.29 -20.92 -0.09 -1.94 16 24 C -0.13 -2.05 9.92 21.22 0.21 -1.84 16 25 C -0.21 -3.11 11.23 66.72 0.75 -2.36 16 26 S 0.08 1.48 23.34 -56.49 -1.32 0.16 16 27 C -0.20 -4.29 9.25 66.72 0.62 -3.67 16 28 H 0.05 0.88 7.76 -2.39 -0.02 0.86 16 29 H 0.07 1.09 7.56 -2.38 -0.02 1.07 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.42 7.45 8.18 -92.71 -0.76 6.69 16 32 H 0.11 2.46 7.45 -2.39 -0.02 2.45 16 33 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.10 1.59 7.91 -2.39 -0.02 1.57 16 35 H 0.11 3.15 8.08 -2.39 -0.02 3.13 16 36 H 0.08 2.35 7.30 -2.39 -0.02 2.34 16 37 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 38 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.09 2.20 7.42 -2.39 -0.02 2.19 16 40 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.15 3.46 7.96 -2.91 -0.02 3.44 16 Total: -1.00 -75.50 377.57 -2.33 -77.83 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.44 Total: 36.87 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.59 Total: 8.47 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -9.10 Total: -116.46 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.09 Total: -52.07 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.32 Total: 0.16 kcal Total: -75.50 -2.33 -77.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714947093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.108 kcal (2) G-P(sol) polarization free energy of solvation -75.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds