Wall clock time and date at job start Tue Mar 31 2020 20:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.88638 * 2 1 4 4 C 1.55126 * 110.90706 * 124.10240 * 2 1 3 5 5 N 1.47426 * 104.72167 * 155.27177 * 4 2 1 6 6 C 1.34779 * 125.64978 * 155.81448 * 5 4 2 7 7 O 1.21706 * 119.99697 * 4.56372 * 6 5 4 8 8 C 1.46576 * 120.00294 * 184.56569 * 6 5 4 9 9 C 1.36646 * 125.46259 * 174.51085 * 8 6 5 10 10 C 1.37465 * 113.30408 * 180.02562 * 9 8 6 11 11 C 1.33820 * 115.09645 * 359.97438 * 10 9 8 12 12 S 1.70617 * 110.95634 * 359.97438 * 11 10 9 13 13 C 1.47019 * 108.70485 * 335.55380 * 5 4 2 14 14 C 1.54327 * 107.26896 * 1.28533 * 13 5 4 15 15 H 1.08999 * 110.71931 * 263.65258 * 14 13 5 16 16 N 1.46902 * 110.72044 * 140.55869 * 14 13 5 17 17 C 1.46904 * 111.00186 * 86.44949 * 16 14 13 18 18 C 1.50695 * 109.46876 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00422 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00197 * 180.02562 * 18 17 16 21 21 C 1.37090 * 120.00366 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00110 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99814 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99675 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00137 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47276 * 90.00155 * 25 23 21 27 27 H 1.48505 * 109.47143 * 210.00327 * 25 23 21 28 28 H 1.48504 * 109.46869 * 329.99951 * 25 23 21 29 29 H 1.09007 * 109.47231 * 183.87648 * 1 2 3 30 30 H 1.09003 * 109.47134 * 303.87448 * 1 2 3 31 31 H 1.09000 * 109.47703 * 63.87255 * 1 2 3 32 32 H 1.09000 * 110.49614 * 36.43484 * 4 2 1 33 33 H 1.09001 * 110.34420 * 274.03658 * 4 2 1 34 34 H 1.08011 * 123.34819 * 359.97438 * 9 8 6 35 35 H 1.08000 * 122.45607 * 179.97438 * 10 9 8 36 36 H 1.08003 * 124.51954 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.88544 * 120.70048 * 13 5 4 38 38 H 1.08996 * 109.88544 * 241.71403 * 13 5 4 39 39 H 1.00908 * 111.00039 * 322.49822 * 16 14 13 40 40 H 1.09001 * 109.46970 * 300.00271 * 17 16 14 41 41 H 1.09000 * 109.46620 * 60.00229 * 17 16 14 42 42 H 0.97005 * 119.99343 * 359.97438 * 20 18 17 43 43 H 0.97002 * 119.99553 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8125 1.1999 5 7 3.4271 -1.2435 0.7726 6 6 4.4477 -1.5624 1.5931 7 8 4.2753 -1.5866 2.7976 8 6 5.7652 -1.8800 1.0348 9 6 6.8989 -2.1132 1.7612 10 6 7.9973 -2.3879 0.9818 11 6 7.7732 -2.3810 -0.3375 12 16 6.1400 -2.0231 -0.6772 13 6 3.4674 -1.2738 -0.6967 14 6 2.0860 -0.8074 -1.2026 15 1 1.4477 -1.6626 -1.4247 16 7 2.2289 0.0530 -2.3848 17 6 2.2895 -0.7480 -3.6147 18 6 2.4363 0.1668 -4.8032 19 8 2.4860 1.3679 -4.6415 20 7 2.5123 -0.3495 -6.0458 21 6 2.6464 0.4826 -7.1269 22 1 2.6907 1.5521 -6.9830 23 6 2.7242 -0.0498 -8.4081 24 7 2.8522 0.7480 -9.4445 25 14 2.6468 -1.8995 -8.6571 26 1 1.2330 -2.3159 -8.8384 27 1 3.4305 -2.2698 -9.8629 28 1 3.2156 -2.5832 -7.4678 29 1 -0.3634 -1.0254 0.0695 30 1 -0.3633 0.5728 0.8532 31 1 -0.3634 0.4525 -0.9226 32 1 1.4524 -1.6788 1.3979 33 1 2.1516 -0.1812 2.0859 34 1 6.9290 -2.0837 2.8405 35 1 8.9701 -2.5941 1.4032 36 1 8.5257 -2.5767 -1.0872 37 1 4.2425 -0.5992 -1.0604 38 1 3.6677 -2.2884 -1.0412 39 1 3.0381 0.6500 -2.3019 40 1 3.1448 -1.4220 -3.5675 41 1 1.3733 -1.3300 -3.7147 42 1 2.4728 -1.3101 -6.1750 43 1 2.9069 0.3763 -10.3388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717272442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:19 Heat of formation + Delta-G solvation = -22.856677 kcal Electronic energy + Delta-G solvation = -26432.697880 eV Core-core repulsion = 22604.861304 eV Total energy + Delta-G solvation = -3827.836576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52595 -38.88640 -38.23987 -37.38994 -34.82574 -33.91103 -33.02674 -31.71229 -30.17671 -29.15857 -26.99071 -26.46948 -24.87570 -23.97801 -22.43997 -21.19912 -20.62947 -19.42975 -19.30918 -18.39261 -18.30740 -16.72451 -16.57604 -15.99516 -15.82188 -15.47560 -15.16841 -14.88484 -14.58530 -14.41909 -13.88662 -13.72475 -13.35297 -13.31730 -13.08942 -13.03854 -12.81553 -12.67389 -12.54166 -12.49940 -12.31251 -12.13863 -11.86271 -11.55933 -11.22723 -11.16710 -10.95023 -10.87375 -10.64338 -10.33349 -10.02332 -9.62693 -9.30220 -9.01301 -8.82143 -8.67348 -8.31629 -8.22911 -6.35886 -3.87624 0.21943 1.19159 1.62645 2.08935 2.56899 2.92059 2.97294 3.02608 3.11272 3.66445 3.87292 4.05429 4.08693 4.21349 4.49868 4.70569 4.72066 4.77840 4.85597 4.97987 5.01462 5.12864 5.16590 5.18104 5.37743 5.39200 5.47338 5.52190 5.55879 5.61061 5.69607 5.78306 5.81176 5.85236 5.95424 6.01172 6.05371 6.19325 6.91321 7.10119 7.37446 7.52413 7.79527 8.09043 8.53907 8.89826 9.36912 9.76161 10.77132 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011862 B = 0.003072 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.007005 B = 9111.619997 C =10887.450539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.093 0.907 4 C 0.111 3.889 5 N -0.612 5.612 6 C 0.606 3.394 7 O -0.533 6.533 8 C -0.271 4.271 9 C -0.055 4.055 10 C -0.153 4.153 11 C -0.244 4.244 12 S 0.222 5.778 13 C 0.053 3.947 14 C 0.088 3.912 15 H 0.100 0.900 16 N -0.649 5.649 17 C 0.044 3.956 18 C 0.449 3.551 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.355 0.645 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.370 0.630 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -10.373 19.925 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.111 0.889 4 C -0.011 4.011 5 N -0.345 5.345 6 C 0.395 3.605 7 O -0.411 6.411 8 C -0.391 4.391 9 C -0.089 4.089 10 C -0.184 4.184 11 C -0.381 4.381 12 S 0.491 5.509 13 C -0.074 4.074 14 C -0.024 4.024 15 H 0.118 0.882 16 N -0.281 5.281 17 C -0.089 4.089 18 C 0.234 3.766 19 O -0.446 6.446 20 N -0.228 5.228 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.185 0.815 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.176 0.824 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.203 0.797 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.623 -9.278 19.040 21.342 hybrid contribution 2.091 -2.126 0.737 3.072 sum 4.713 -11.404 19.777 23.311 Atomic orbital electron populations 1.21634 0.92925 1.01862 1.02935 1.22423 0.97037 0.99712 0.91986 0.88854 1.22481 0.81708 0.98595 0.98296 1.48184 1.12597 1.67144 1.06591 1.16579 0.81796 0.76739 0.85383 1.90830 1.83147 1.53422 1.13742 1.24575 0.98465 1.18264 0.97795 1.20770 0.90191 0.96398 1.01574 1.20028 1.00449 1.05378 0.92505 1.25700 1.03668 1.07666 1.01084 1.83611 1.00729 1.63118 1.03492 1.23233 1.01057 1.02461 0.80631 1.22766 0.92885 0.95847 0.90908 0.88202 1.60163 1.48712 1.20044 0.99199 1.21809 1.01578 0.95329 0.90161 1.19644 0.84255 0.89156 0.83535 1.90582 1.53930 1.15098 1.84950 1.42199 1.66363 1.08040 1.06228 1.19429 1.47529 0.93382 0.83109 0.86249 1.25048 0.97579 0.98295 0.95206 1.69625 1.48709 1.34857 0.98794 0.86678 0.78993 0.85118 0.78613 1.19560 1.20185 1.19521 0.92708 0.92471 0.90778 0.90895 0.89968 0.83001 0.83898 0.81469 0.90363 0.90623 0.82415 0.93531 0.89116 0.79690 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.31 37.16 0.35 -0.79 16 2 C -0.09 -0.85 3.34 -88.35 -0.30 -1.15 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.11 1.07 6.36 -2.41 -0.02 1.06 16 5 N -0.61 -6.75 3.32 -171.95 -0.57 -7.32 16 6 C 0.61 7.88 7.80 -12.90 -0.10 7.78 16 7 O -0.53 -8.43 17.14 5.18 0.09 -8.34 16 8 C -0.27 -3.06 6.38 -36.80 -0.23 -3.30 16 9 C -0.06 -0.56 10.01 -40.44 -0.40 -0.97 16 10 C -0.15 -1.30 10.15 -41.41 -0.42 -1.72 16 11 C -0.24 -2.05 10.92 29.18 0.32 -1.73 16 12 S 0.22 2.07 18.47 -107.50 -1.99 0.08 16 13 C 0.05 0.51 4.84 -3.06 -0.01 0.50 16 14 C 0.09 0.87 2.70 -65.87 -0.18 0.69 16 15 H 0.10 0.89 7.80 -51.93 -0.40 0.48 16 16 N -0.65 -8.54 5.98 -106.05 -0.63 -9.17 16 17 C 0.04 0.63 6.02 -4.98 -0.03 0.60 16 18 C 0.45 9.44 7.82 -10.99 -0.09 9.35 16 19 O -0.56 -14.31 15.78 5.54 0.09 -14.22 16 20 N -0.59 -13.25 5.09 -10.96 -0.06 -13.31 16 21 C -0.31 -8.35 10.16 -14.93 -0.15 -8.50 16 22 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 23 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 24 N -0.88 -25.14 13.96 55.50 0.77 -24.36 16 25 Si 0.88 18.65 27.74 -169.99 -4.71 13.94 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 29 H 0.05 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.64 7.99 -51.93 -0.41 0.23 16 33 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.08 0.79 6.10 -51.91 -0.32 0.47 16 38 H 0.08 0.67 7.14 -51.93 -0.37 0.30 16 39 H 0.35 4.96 7.85 -39.29 -0.31 4.65 16 40 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 41 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 42 H 0.37 7.24 5.76 -40.82 -0.24 7.01 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -33.58 368.84 -8.64 -42.22 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.82 Total: 12.09 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.36 Total: 2.83 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.49 Total: -54.17 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.18 Total: -22.55 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.71 Total: 13.94 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.99 Total: 0.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.58 -8.64 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717272442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.360 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds