Wall clock time and date at job start Tue Mar 31 2020 20:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47764 * 2 1 4 4 N 1.46504 * 109.47612 * 239.99476 * 2 1 3 5 5 C 1.34778 * 119.99632 * 84.99754 * 4 2 1 6 6 O 1.21705 * 120.00029 * 0.02562 * 5 4 2 7 7 C 1.46587 * 119.99989 * 180.02562 * 5 4 2 8 8 C 1.36644 * 125.45418 * 180.02562 * 7 5 4 9 9 C 1.37479 * 113.29279 * 179.97438 * 8 7 5 10 10 C 1.33813 * 115.09908 * 359.97438 * 9 8 7 11 11 S 1.70616 * 110.95764 * 359.72602 * 10 9 8 12 12 C 1.53010 * 109.47158 * 119.99884 * 2 1 3 13 13 C 1.53935 * 113.72848 * 300.00172 * 12 2 1 14 14 N 1.47962 * 86.30001 * 221.86345 * 13 12 2 15 15 C 1.46903 * 111.00056 * 137.63674 * 14 13 12 16 16 C 1.50700 * 109.47048 * 169.99964 * 15 14 13 17 17 O 1.21287 * 120.00092 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99908 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00045 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99958 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00062 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00011 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99890 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46808 * 90.00563 * 23 21 19 25 25 H 1.48498 * 109.47104 * 210.00361 * 23 21 19 26 26 H 1.48500 * 109.47382 * 330.00644 * 23 21 19 27 27 C 1.48308 * 90.62534 * 24.68684 * 14 13 12 28 28 H 1.08993 * 109.47529 * 300.00148 * 1 2 3 29 29 H 1.09002 * 109.46903 * 60.00721 * 1 2 3 30 30 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00343 * 265.00206 * 4 2 1 32 32 H 1.07994 * 123.35895 * 359.97438 * 8 7 5 33 33 H 1.07996 * 122.44763 * 180.02562 * 9 8 7 34 34 H 1.08000 * 124.52121 * 180.02562 * 10 9 8 35 35 H 1.08999 * 112.93383 * 71.56619 * 12 2 1 36 36 H 1.09002 * 113.76229 * 336.23742 * 13 12 2 37 37 H 1.09005 * 113.75703 * 107.49267 * 13 12 2 38 38 H 1.08997 * 109.47397 * 290.00293 * 15 14 13 39 39 H 1.09006 * 109.46564 * 49.99948 * 15 14 13 40 40 H 0.97002 * 119.99746 * 0.02562 * 18 16 15 41 41 H 0.97004 * 120.00081 * 179.97438 * 22 21 19 42 42 H 1.09003 * 113.75437 * 220.98675 * 27 14 13 43 43 H 1.08998 * 113.85723 * 89.64375 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8580 1.1626 -2.4117 7 6 2.6353 -0.7096 -3.5541 8 6 2.8085 -0.1390 -4.7836 9 6 3.2802 -1.0183 -5.7293 10 6 3.4874 -2.2657 -5.2915 11 16 3.1008 -2.4032 -3.6354 12 6 2.0400 -0.7213 1.2493 13 6 1.5822 -0.0738 2.5687 14 7 2.9593 -0.3146 3.0533 15 6 3.4649 0.8452 3.7999 16 6 4.7577 0.4786 4.4821 17 8 5.2133 -0.6386 4.3582 18 7 5.4077 1.3923 5.2300 19 6 6.5840 1.0590 5.8502 20 1 6.9901 0.0645 5.7392 21 6 7.2538 2.0008 6.6216 22 7 8.3816 1.6815 7.2156 23 14 6.5518 3.7213 6.8130 24 1 5.6515 3.7600 7.9933 25 1 7.6609 4.6900 7.0044 26 1 5.7849 4.0815 5.5934 27 6 3.4669 -0.3154 1.6599 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6318 -1.1525 32 1 2.5960 0.8991 -4.9917 33 1 3.4705 -0.7235 -6.7507 34 1 3.8551 -3.0760 -5.9034 35 1 1.8823 -1.7991 1.2116 36 1 1.3279 0.9820 2.4748 37 1 0.8230 -0.6483 3.0996 38 1 3.6390 1.6724 3.1119 39 1 2.7309 1.1435 4.5485 40 1 5.0431 2.2857 5.3293 41 1 8.8494 2.3391 7.7539 42 1 4.2152 -1.0838 1.4656 43 1 3.7647 0.6690 1.2986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717542341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:19 Heat of formation + Delta-G solvation = 5.846362 kcal Electronic energy + Delta-G solvation = -25801.279520 eV Core-core repulsion = 21974.687601 eV Total energy + Delta-G solvation = -3826.591919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63733 -39.65662 -38.06618 -37.73475 -35.47545 -33.90503 -32.04349 -31.61469 -30.12446 -29.35043 -26.45802 -25.63764 -25.39295 -23.98344 -22.42812 -21.10982 -20.23360 -19.55687 -19.31783 -18.71793 -18.18894 -16.82635 -16.24452 -16.08102 -15.83102 -15.43094 -15.19917 -14.93402 -14.84717 -14.43647 -13.97841 -13.65838 -13.40288 -13.22333 -13.15392 -13.09848 -12.75849 -12.70299 -12.64481 -12.43504 -12.18245 -11.94635 -11.54376 -11.41220 -11.17410 -11.02309 -10.78256 -10.72392 -10.57489 -10.29751 -9.94942 -9.53558 -9.51246 -9.23867 -9.01343 -8.79510 -8.27029 -8.14502 -6.28224 -3.79371 0.11120 1.05589 1.45796 2.01202 2.75971 2.90841 3.04473 3.08581 3.16638 3.76675 3.85096 4.12612 4.22125 4.45282 4.47694 4.59483 4.72184 4.89087 4.95277 5.06385 5.08930 5.13177 5.18072 5.31308 5.35195 5.44733 5.52060 5.56043 5.56872 5.64216 5.67667 5.77597 5.85440 5.90576 5.95118 5.97865 6.05554 6.24224 6.48341 7.07205 7.12863 7.61361 7.84656 8.17475 8.63873 8.98718 9.45873 9.88007 10.85091 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.002171 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.078325 B =12895.301291 C =13423.537067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.092 0.908 4 N -0.718 5.718 5 C 0.592 3.408 6 O -0.529 6.529 7 C -0.268 4.268 8 C -0.056 4.056 9 C -0.151 4.151 10 C -0.229 4.229 11 S 0.205 5.795 12 C -0.126 4.126 13 C 0.011 3.989 14 N -0.448 5.448 15 C 0.006 3.994 16 C 0.456 3.544 17 O -0.557 6.557 18 N -0.595 5.595 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.883 5.883 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.016 3.984 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.398 0.602 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.369 0.631 41 H 0.273 0.727 42 H 0.092 0.908 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.992 -4.912 -24.034 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.110 0.890 4 N -0.369 5.369 5 C 0.378 3.622 6 O -0.408 6.408 7 C -0.388 4.388 8 C -0.089 4.089 9 C -0.182 4.182 10 C -0.367 4.367 11 S 0.471 5.529 12 C -0.146 4.146 13 C -0.119 4.119 14 N -0.170 5.170 15 C -0.126 4.126 16 C 0.241 3.759 17 O -0.438 6.438 18 N -0.235 5.235 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.113 4.113 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.233 0.767 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.202 0.798 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.496 -6.515 -22.486 28.639 hybrid contribution -0.284 2.896 -1.323 3.196 sum -16.780 -3.619 -23.809 29.352 Atomic orbital electron populations 1.22150 0.94706 1.02419 1.02751 1.21112 0.94364 0.97247 0.82602 0.89045 1.45938 1.67576 1.13879 1.09548 1.16942 0.77288 0.86113 0.81817 1.90839 1.50382 1.14922 1.84612 1.24682 1.16155 0.98832 0.99131 1.20828 0.96308 1.01454 0.90359 1.20075 1.03973 0.92460 1.01676 1.25358 1.08356 1.02375 1.00644 1.83086 1.58691 1.06073 1.05006 1.23324 0.97056 1.01304 0.92887 1.23963 0.94193 0.99974 0.93758 1.68484 1.01987 1.35754 1.10801 1.22522 0.97928 0.93028 0.99096 1.19590 0.86381 0.86221 0.83699 1.90556 1.68159 1.21084 1.63987 1.42230 1.23015 1.12148 1.46089 1.19419 0.96958 1.01511 1.25288 0.86337 1.25031 0.95963 0.98342 0.96908 1.69621 1.15453 1.35282 1.31975 0.86674 0.79409 0.84563 0.78749 1.19627 1.20209 1.19564 1.24075 0.96295 1.01730 0.89197 0.91119 0.92082 0.92202 0.76713 0.82871 0.83642 0.81297 0.87623 0.91127 0.88926 0.92317 0.89249 0.79800 0.91668 0.88920 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.29 37.16 0.35 -0.98 16 2 C 0.15 1.43 2.41 -67.92 -0.16 1.26 16 3 H 0.09 1.03 7.37 -51.93 -0.38 0.65 16 4 N -0.72 -6.64 5.07 -55.14 -0.28 -6.92 16 5 C 0.59 6.71 7.75 -12.89 -0.10 6.61 16 6 O -0.53 -7.77 16.50 5.18 0.09 -7.68 16 7 C -0.27 -2.52 6.45 -36.79 -0.24 -2.76 16 8 C -0.06 -0.49 10.01 -40.43 -0.40 -0.89 16 9 C -0.15 -1.01 10.15 -41.41 -0.42 -1.43 16 10 C -0.23 -1.39 10.92 29.18 0.32 -1.07 16 11 S 0.20 1.36 22.16 -107.50 -2.38 -1.02 16 12 C -0.13 -1.25 3.49 -89.68 -0.31 -1.57 16 13 C 0.01 0.12 6.56 -2.77 -0.02 0.10 16 14 N -0.45 -6.98 5.66 -238.67 -1.35 -8.33 16 15 C 0.01 0.11 5.28 -4.97 -0.03 0.08 16 16 C 0.46 10.62 7.83 -10.98 -0.09 10.54 16 17 O -0.56 -15.38 16.01 5.55 0.09 -15.29 16 18 N -0.59 -14.48 5.09 -10.97 -0.06 -14.54 16 19 C -0.30 -8.72 10.16 -14.94 -0.15 -8.87 16 20 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -26.13 13.96 55.50 0.77 -25.36 16 23 Si 0.88 19.68 27.74 -169.99 -4.71 14.96 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.52 6.52 56.52 0.37 -5.16 16 27 C 0.02 0.22 7.52 -2.58 -0.02 0.20 16 28 H 0.07 0.51 7.43 -51.93 -0.39 0.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.40 2.91 7.72 -40.82 -0.31 2.60 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.88 7.39 -51.93 -0.38 0.49 16 39 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 40 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.07 0.94 7.31 -51.93 -0.38 0.56 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -36.08 375.73 -9.39 -45.47 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.85 Total: 10.80 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.37 Total: 2.24 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.91 Total: -55.15 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.97 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.71 Total: 14.96 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.38 Total: -1.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.08 -9.39 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717542341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.317 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds