Wall clock time and date at job start Tue Mar 31 2020 20:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46719 * 2 1 4 4 N 1.46508 * 109.46996 * 119.99563 * 2 1 3 5 5 C 1.34776 * 119.99899 * 275.00283 * 4 2 1 6 6 O 1.21695 * 120.00123 * 0.02562 * 5 4 2 7 7 C 1.46578 * 119.99683 * 180.02562 * 5 4 2 8 8 C 1.36648 * 125.45649 * 180.02562 * 7 5 4 9 9 C 1.37480 * 113.29759 * 179.97438 * 8 7 5 10 10 C 1.33817 * 115.09758 * 0.02562 * 9 8 7 11 11 S 1.70620 * 110.95739 * 359.71674 * 10 9 8 12 12 C 1.52991 * 109.47320 * 239.99699 * 2 1 3 13 13 C 1.53510 * 114.17166 * 60.00108 * 12 2 1 14 14 N 1.47472 * 87.93567 * 139.67088 * 13 12 2 15 15 C 1.46906 * 111.00187 * 221.29686 * 14 13 12 16 16 C 1.50701 * 109.46965 * 169.99871 * 15 14 13 17 17 O 1.21289 * 120.00042 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99669 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00007 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99870 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00222 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99640 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99972 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47317 * 90.00302 * 23 21 19 25 25 H 1.48506 * 109.47007 * 210.00287 * 23 21 19 26 26 H 1.48503 * 109.47242 * 329.99897 * 23 21 19 27 27 C 1.47474 * 87.83857 * 332.99021 * 14 13 12 28 28 H 1.09002 * 109.47330 * 300.00230 * 1 2 3 29 29 H 1.08999 * 109.47037 * 60.00394 * 1 2 3 30 30 H 1.09005 * 109.47262 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99775 * 95.00220 * 4 2 1 32 32 H 1.07997 * 123.35528 * 359.97438 * 8 7 5 33 33 H 1.07991 * 122.45220 * 180.02562 * 9 8 7 34 34 H 1.08004 * 124.52253 * 180.02562 * 10 9 8 35 35 H 1.09001 * 113.25606 * 287.05067 * 12 2 1 36 36 H 1.08999 * 113.47644 * 24.90173 * 13 12 2 37 37 H 1.09005 * 113.47783 * 254.44028 * 13 12 2 38 38 H 1.08993 * 109.47164 * 289.99814 * 15 14 13 39 39 H 1.08996 * 109.46920 * 49.99848 * 15 14 13 40 40 H 0.97001 * 120.00106 * 359.97438 * 18 16 15 41 41 H 0.96999 * 119.99752 * 179.97438 * 22 21 19 42 42 H 1.08998 * 113.48515 * 141.77227 * 27 14 13 43 43 H 1.09001 * 113.47583 * 272.24643 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8571 1.1625 2.4119 7 6 2.6361 -0.7089 3.5539 8 6 2.8084 -0.1385 4.7837 9 6 3.2803 -1.0176 5.7295 10 6 3.4884 -2.2649 5.2915 11 16 3.0880 -2.4061 3.6389 12 6 2.0400 -0.7213 -1.2491 13 6 1.5894 -0.0840 -2.5710 14 7 2.9423 -0.3453 -3.0965 15 6 3.4289 0.7931 -3.8873 16 6 4.8906 0.5999 -4.1992 17 8 5.4698 -0.3891 -3.8022 18 7 5.5541 1.5260 -4.9193 19 6 6.8839 1.3505 -5.2026 20 1 7.3997 0.4699 -4.8491 21 6 7.5679 2.3050 -5.9455 22 7 6.9401 3.3762 -6.3760 23 14 9.3797 2.0655 -6.3321 24 1 9.5191 1.3286 -7.6137 25 1 10.0403 3.3904 -6.4485 26 1 10.0199 1.2873 -5.2413 27 6 3.4348 -0.2734 -1.7083 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2490 -1.6317 1.1528 32 1 2.5951 0.8995 4.9919 33 1 3.4692 -0.7232 6.7512 34 1 3.8557 -3.0753 5.9036 35 1 1.9066 -1.8022 -1.2065 36 1 1.3548 0.9769 -2.4838 37 1 0.8088 -0.6483 -3.0813 38 1 2.8643 0.8571 -4.8174 39 1 3.2973 1.7134 -3.3183 40 1 5.0907 2.3167 -5.2371 41 1 7.4177 4.0428 -6.8942 42 1 4.2182 -0.9982 -1.4872 43 1 3.6927 0.7370 -1.3908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717542342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:22 Heat of formation + Delta-G solvation = 0.087747 kcal Electronic energy + Delta-G solvation = -25859.392652 eV Core-core repulsion = 22032.551020 eV Total energy + Delta-G solvation = -3826.841631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66769 -39.66958 -37.95377 -37.63272 -35.42485 -33.88688 -31.97288 -31.23100 -30.04088 -29.25314 -26.27235 -25.46412 -25.31696 -24.09788 -22.46123 -21.05153 -20.20554 -19.49189 -19.18260 -18.57194 -17.84711 -16.73789 -16.16369 -16.07515 -15.77222 -15.37815 -15.17471 -14.77781 -14.65012 -14.22941 -13.91949 -13.71611 -13.54516 -13.24595 -13.14684 -13.02180 -12.69746 -12.61921 -12.46384 -12.23452 -11.81225 -11.73785 -11.46710 -11.36522 -11.08273 -10.94783 -10.71898 -10.44681 -10.38797 -10.22538 -10.19030 -9.49552 -9.44140 -9.18146 -8.96560 -8.70617 -8.24164 -7.95408 -6.40706 -3.81480 0.16261 1.10439 1.50590 2.06329 2.83031 2.97551 3.18544 3.26992 3.32900 3.90377 4.02687 4.20443 4.32475 4.52118 4.60766 4.65504 4.93699 4.94121 5.04051 5.11227 5.17471 5.21720 5.25100 5.39872 5.47542 5.55234 5.57314 5.69114 5.71836 5.74735 5.80159 5.84361 5.95172 5.97712 6.06932 6.17296 6.26899 6.33187 6.59060 7.19363 7.22114 7.56043 7.91822 8.06616 8.62419 9.18915 9.55139 10.06905 10.77146 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.002266 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.879392 B =12354.651984 C =13449.173397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.092 0.908 4 N -0.718 5.718 5 C 0.592 3.408 6 O -0.529 6.529 7 C -0.266 4.266 8 C -0.057 4.057 9 C -0.150 4.150 10 C -0.230 4.230 11 S 0.204 5.796 12 C -0.130 4.130 13 C 0.007 3.993 14 N -0.444 5.444 15 C 0.009 3.991 16 C 0.444 3.556 17 O -0.579 6.579 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.020 3.980 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.398 0.602 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.090 0.910 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.892 -9.091 20.487 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.110 0.890 4 N -0.369 5.369 5 C 0.378 3.622 6 O -0.407 6.407 7 C -0.386 4.386 8 C -0.090 4.090 9 C -0.182 4.182 10 C -0.368 4.368 11 S 0.471 5.529 12 C -0.149 4.149 13 C -0.123 4.123 14 N -0.165 5.165 15 C -0.124 4.124 16 C 0.230 3.770 17 O -0.463 6.463 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.109 4.109 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.232 0.768 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.187 0.813 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.436 -10.518 19.155 25.653 hybrid contribution 0.719 1.947 1.068 2.334 sum -12.717 -8.571 20.223 25.380 Atomic orbital electron populations 1.22146 0.94734 1.02340 1.02733 1.21049 0.94272 0.97252 0.82497 0.88998 1.45930 1.67546 1.13847 1.09545 1.16933 0.77334 0.86121 0.81826 1.90837 1.50341 1.14909 1.84597 1.24690 1.16107 0.98695 0.99138 1.20831 0.96383 1.01482 0.90318 1.20071 1.03931 0.92514 1.01635 1.25350 1.08399 1.02369 1.00704 1.83075 1.58752 1.05819 1.05304 1.23102 0.97969 1.01022 0.92847 1.23842 0.94797 1.00021 0.93646 1.68822 1.02361 1.36108 1.09243 1.22496 0.96995 0.92926 0.99936 1.19666 0.87605 0.85476 0.84302 1.90516 1.69075 1.30286 1.56415 1.41873 1.10529 1.20598 1.47169 1.19691 0.85041 1.07018 1.31041 0.87963 1.25264 1.00507 0.95256 0.96963 1.69613 1.37421 1.10117 1.37196 0.85857 0.81957 0.77499 0.78974 1.20386 1.20926 1.19430 1.23734 0.96409 1.01478 0.89278 0.92103 0.91126 0.92256 0.76756 0.82856 0.83665 0.81332 0.87530 0.91193 0.89426 0.89046 0.92655 0.77493 0.91878 0.89123 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.29 37.16 0.35 -1.09 16 2 C 0.15 1.61 2.47 -67.93 -0.17 1.44 16 3 H 0.09 1.15 7.33 -51.93 -0.38 0.77 16 4 N -0.72 -7.28 5.07 -55.15 -0.28 -7.56 16 5 C 0.59 7.20 7.75 -12.90 -0.10 7.10 16 6 O -0.53 -8.21 16.50 5.19 0.09 -8.13 16 7 C -0.27 -2.69 6.45 -36.79 -0.24 -2.93 16 8 C -0.06 -0.53 10.01 -40.43 -0.40 -0.93 16 9 C -0.15 -1.09 10.15 -41.41 -0.42 -1.51 16 10 C -0.23 -1.51 10.92 29.18 0.32 -1.19 16 11 S 0.20 1.47 22.16 -107.50 -2.38 -0.91 16 12 C -0.13 -1.42 3.64 -90.09 -0.33 -1.75 16 13 C 0.01 0.08 6.36 -7.56 -0.05 0.03 16 14 N -0.44 -7.31 6.06 -246.12 -1.49 -8.80 16 15 C 0.01 0.15 5.31 -4.97 -0.03 0.13 16 16 C 0.44 10.70 7.62 -10.98 -0.08 10.62 16 17 O -0.58 -15.93 15.34 5.55 0.09 -15.85 16 18 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 23 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.02 0.30 6.28 -7.55 -0.05 0.26 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.56 7.48 -51.93 -0.39 0.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.40 3.23 7.72 -40.82 -0.31 2.92 16 32 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.17 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.76 7.73 -51.93 -0.40 0.35 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.06 0.91 7.56 -51.93 -0.39 0.51 16 40 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.09 1.55 8.13 -51.93 -0.42 1.12 16 43 H 0.07 1.06 7.49 -51.93 -0.39 0.67 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -34.33 377.47 -10.00 -44.33 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -5.90 Total: 11.62 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -1.44 Total: 2.09 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -1.11 Total: -55.12 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.38 Total: -0.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.33 -10.00 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717542342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.416 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds