Wall clock time and date at job start Tue Mar 31 2020 20:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.87592 * 2 1 4 4 C 1.54325 * 109.87860 * 121.17440 * 2 1 3 5 5 H 1.09004 * 110.72559 * 23.24887 * 4 2 1 6 6 N 1.46902 * 110.72366 * 259.97311 * 4 2 1 7 7 C 1.46897 * 111.00378 * 155.00224 * 6 4 2 8 8 C 1.50700 * 109.47228 * 180.02562 * 7 6 4 9 9 O 1.21288 * 119.99722 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00103 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00031 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99744 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00011 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00190 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99884 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47145 * 90.00142 * 15 13 11 17 17 H 1.48498 * 109.46836 * 209.99981 * 15 13 11 18 18 H 1.48499 * 109.47101 * 329.99657 * 15 13 11 19 19 C 1.55164 * 102.94212 * 141.60806 * 4 2 1 20 20 C 1.54907 * 101.58119 * 324.49812 * 19 4 2 21 21 N 1.47021 * 109.88584 * 238.98065 * 2 1 3 22 22 C 1.34776 * 125.64359 * 61.60519 * 21 2 1 23 23 O 1.21700 * 120.00236 * 356.66075 * 22 21 2 24 24 C 1.46588 * 119.99832 * 176.65847 * 22 21 2 25 25 C 1.36643 * 125.45992 * 186.60353 * 24 22 21 26 26 C 1.37475 * 113.29756 * 179.80236 * 25 24 22 27 27 C 1.33815 * 115.10099 * 0.49512 * 26 25 24 28 28 S 1.70618 * 110.95210 * 359.72905 * 27 26 25 29 29 H 1.09000 * 109.47346 * 179.56298 * 1 2 3 30 30 H 1.08999 * 109.46685 * 59.56435 * 1 2 3 31 31 H 1.09000 * 109.47070 * 299.56665 * 1 2 3 32 32 H 1.00898 * 110.99595 * 31.04492 * 6 4 2 33 33 H 1.08999 * 109.46791 * 299.99932 * 7 6 4 34 34 H 1.09000 * 109.46941 * 59.99777 * 7 6 4 35 35 H 0.97003 * 119.99761 * 359.97438 * 10 8 7 36 36 H 0.96997 * 120.00348 * 179.97438 * 14 13 11 37 37 H 1.09001 * 111.00653 * 206.42007 * 19 4 2 38 38 H 1.09003 * 111.02966 * 82.58560 * 19 4 2 39 39 H 1.09000 * 110.36657 * 278.16840 * 20 19 4 40 40 H 1.09004 * 110.36596 * 155.84618 * 20 19 4 41 41 H 1.07995 * 123.35148 * 0.02562 * 25 24 22 42 42 H 1.08000 * 122.44816 * 180.20439 * 26 25 24 43 43 H 1.07996 * 124.52570 * 179.74628 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7513 1.2417 5 1 1.3050 -1.4482 1.6163 6 7 2.4565 0.1954 2.2908 7 6 2.3871 -0.4293 3.6184 8 6 2.8047 0.5700 4.6663 9 8 3.1288 1.6920 4.3392 10 7 2.8191 0.2165 5.9668 11 6 3.1985 1.1258 6.9201 12 1 3.4863 2.1251 6.6289 13 6 3.2128 0.7615 8.2610 14 7 3.5770 1.6329 9.1747 15 14 2.7144 -0.9669 8.7646 16 1 3.9115 -1.8457 8.7696 17 1 2.1190 -0.9338 10.1246 18 1 1.7165 -1.4952 7.8001 19 6 3.2876 -1.5153 0.6904 20 6 2.8145 -1.8785 -0.7393 21 7 2.0301 -0.7125 -1.1848 22 6 1.8075 -0.3587 -2.4661 23 8 1.0911 0.5921 -2.7192 24 6 2.4282 -1.1190 -3.5549 25 6 2.3844 -0.7863 -4.8795 26 6 3.0559 -1.6747 -5.6857 27 6 3.6215 -2.7054 -5.0467 28 16 3.3419 -2.6094 -3.3664 29 1 -0.3634 -1.0276 -0.0078 30 1 -0.3633 0.5206 -0.8861 31 1 -0.3633 0.5071 0.8938 32 1 1.8956 1.0334 2.2556 33 1 1.3653 -0.7546 3.8139 34 1 3.0548 -1.2903 3.6502 35 1 2.5603 -0.6810 6.2283 36 1 3.5867 1.3787 10.1108 37 1 3.4851 -2.4129 1.2764 38 1 4.1657 -0.8704 0.6593 39 1 2.1886 -2.7706 -0.7166 40 1 3.6716 -2.0321 -1.3949 41 1 1.8761 0.0893 -5.2552 42 1 3.1181 -1.5522 -6.7569 43 1 4.1807 -3.4928 -5.5301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717786964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:47 Heat of formation + Delta-G solvation = -17.982160 kcal Electronic energy + Delta-G solvation = -26139.852794 eV Core-core repulsion = 22312.227593 eV Total energy + Delta-G solvation = -3827.625201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60571 -38.79979 -38.24139 -37.33068 -34.92006 -33.89158 -31.99673 -31.67599 -31.08509 -29.65601 -27.22259 -25.45396 -25.13613 -23.62224 -23.16149 -21.28698 -20.34714 -19.39527 -19.37387 -18.36614 -18.14115 -16.96278 -16.32112 -16.01452 -15.94136 -15.44387 -15.22594 -14.87440 -14.57132 -14.09412 -14.04768 -13.67386 -13.37770 -13.31000 -13.16289 -13.10381 -13.03380 -12.74094 -12.55005 -12.39027 -12.25496 -11.93655 -11.85631 -11.74535 -11.32759 -11.16065 -10.92552 -10.80769 -10.61974 -10.21575 -9.99629 -9.59865 -9.32414 -9.02882 -8.84069 -8.64053 -8.28902 -8.19986 -6.33000 -3.84695 0.16212 1.10800 1.53169 2.05295 2.53933 2.92534 2.99935 3.04612 3.13170 3.70411 3.94486 4.04454 4.08273 4.28157 4.45968 4.63565 4.73389 4.82794 4.89427 4.93420 5.07982 5.11105 5.12024 5.20168 5.23121 5.32638 5.43423 5.56264 5.57113 5.68782 5.73324 5.77266 5.85099 5.87398 5.94953 5.98677 6.05767 6.12890 6.99537 7.14693 7.43724 7.55581 7.83190 8.12175 8.57122 8.92809 9.39924 9.79616 10.80044 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.027702 B = 0.002097 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.519964 B =13349.444963 C =13796.285403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 H 0.091 0.909 4 C 0.078 3.922 5 H 0.066 0.934 6 N -0.655 5.655 7 C 0.048 3.952 8 C 0.449 3.551 9 O -0.563 6.563 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C -0.119 4.119 20 C 0.088 3.912 21 N -0.608 5.608 22 C 0.605 3.395 23 O -0.526 6.526 24 C -0.264 4.264 25 C -0.056 4.056 26 C -0.151 4.151 27 C -0.251 4.251 28 S 0.217 5.783 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.355 0.645 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 -15.455 -25.983 30.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 H 0.109 0.891 4 C -0.033 4.033 5 H 0.083 0.917 6 N -0.289 5.289 7 C -0.084 4.084 8 C 0.235 3.765 9 O -0.445 6.445 10 N -0.229 5.229 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.158 4.158 20 C -0.037 4.037 21 N -0.342 5.342 22 C 0.394 3.606 23 O -0.405 6.405 24 C -0.384 4.384 25 C -0.089 4.089 26 C -0.181 4.181 27 C -0.388 4.388 28 S 0.485 5.515 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.176 0.824 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.171 0.829 42 H 0.160 0.840 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.867 -15.129 -25.043 29.317 hybrid contribution -1.545 -0.710 -0.636 1.815 sum -3.411 -15.839 -25.679 30.363 Atomic orbital electron populations 1.22193 0.94290 1.02366 1.03513 1.21726 0.94534 0.97183 0.83296 0.89061 1.22643 0.95680 0.94122 0.90856 0.91654 1.60147 1.60307 1.07002 1.01441 1.21767 1.00117 0.97590 0.88960 1.19664 0.84820 0.89181 0.82879 1.90579 1.51752 1.21635 1.80557 1.42199 1.61212 1.13444 1.06067 1.19430 1.41890 0.96536 0.85537 0.86262 1.25051 0.97604 0.98037 0.95517 1.69619 1.46747 1.34302 1.01363 0.86664 0.79128 0.84408 0.79119 1.19588 1.20198 1.19541 1.22871 0.99172 1.01147 0.92635 1.22624 0.95243 0.88966 0.96827 1.48274 1.52508 1.28608 1.04774 1.16554 0.80527 0.83259 0.80263 1.90832 1.38065 1.28646 1.82917 1.24578 1.12413 1.03359 0.98045 1.20794 0.97424 1.00051 0.90669 1.20031 1.01176 0.95216 1.01706 1.25765 1.07151 1.04301 1.01575 1.83417 1.46936 1.19086 1.02033 0.92511 0.90710 0.91327 0.82401 0.93502 0.89309 0.79697 0.91590 0.89509 0.88797 0.90430 0.90148 0.82940 0.84006 0.81704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.10 37.16 0.34 -1.45 16 2 C 0.14 1.55 2.98 -66.95 -0.20 1.35 16 3 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 4 C 0.08 0.83 2.81 -65.87 -0.18 0.65 16 5 H 0.07 0.62 7.54 -51.93 -0.39 0.23 16 6 N -0.66 -9.33 5.97 -106.05 -0.63 -9.96 16 7 C 0.05 0.74 6.03 -4.98 -0.03 0.71 16 8 C 0.45 9.82 7.82 -10.99 -0.09 9.73 16 9 O -0.56 -14.81 15.78 5.55 0.09 -14.72 16 10 N -0.59 -13.66 5.09 -10.97 -0.06 -13.71 16 11 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 12 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 13 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 15 Si 0.88 18.98 27.74 -169.99 -4.71 14.27 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 19 C -0.12 -1.08 6.77 -24.58 -0.17 -1.25 16 20 C 0.09 0.71 5.59 -2.53 -0.01 0.70 16 21 N -0.61 -6.65 3.07 -164.58 -0.50 -7.16 16 22 C 0.61 7.63 7.62 -12.89 -0.10 7.53 16 23 O -0.53 -8.26 15.77 5.19 0.08 -8.18 16 24 C -0.26 -2.69 6.37 -36.79 -0.23 -2.92 16 25 C -0.06 -0.51 10.02 -40.44 -0.41 -0.92 16 26 C -0.15 -1.08 10.15 -41.41 -0.42 -1.50 16 27 C -0.25 -1.61 10.92 29.18 0.32 -1.29 16 28 S 0.22 1.52 18.56 -107.50 -2.00 -0.48 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.94 6.77 -51.93 -0.35 0.58 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.35 5.38 8.02 -39.29 -0.32 5.07 16 33 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.58 4.95 -28.47 -0.14 0.44 16 41 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -34.33 366.25 -8.50 -42.83 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.63 Total: 12.64 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.43 Total: 3.68 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.42 Total: -55.55 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.17 Total: -22.90 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.27 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.00 Total: -0.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.33 -8.50 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717786964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.846 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds