Wall clock time and date at job start Tue Mar 31 2020 20:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 O 1.21283 * 120.00262 * 240.00295 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 N 1.46499 * 109.47555 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00199 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99750 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99772 * 180.02562 * 10 9 8 13 13 S 1.81000 * 109.46868 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00170 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99534 * 359.97438 * 14 13 12 16 16 C 1.38799 * 120.00549 * 180.02562 * 14 13 12 17 17 N 1.31632 * 119.99352 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00392 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46996 * 89.99676 * 18 16 14 20 20 H 1.48495 * 109.46895 * 209.99933 * 18 16 14 21 21 H 1.48496 * 109.46857 * 329.99742 * 18 16 14 22 22 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 23 23 C 1.38673 * 120.41546 * 239.72172 * 22 2 1 24 24 C 1.38634 * 118.41497 * 179.77880 * 23 22 2 25 25 C 1.38228 * 119.16263 * 0.51219 * 24 23 22 26 26 N 1.31857 * 120.76093 * 359.73043 * 25 24 23 27 27 C 1.31881 * 121.72866 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 30 30 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 32 32 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 33 33 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 34 34 H 1.08998 * 109.47382 * 300.00439 * 8 7 6 35 35 H 1.09005 * 109.46800 * 60.00640 * 8 7 6 36 36 H 0.97000 * 119.99478 * 0.02562 * 9 8 7 37 37 H 1.09006 * 109.47054 * 300.00143 * 12 10 9 38 38 H 1.08997 * 109.47040 * 60.00297 * 12 10 9 39 39 H 0.97004 * 119.99696 * 180.02562 * 17 16 14 40 40 H 1.07994 * 120.79085 * 0.02562 * 23 22 2 41 41 H 1.07999 * 120.41507 * 180.21766 * 24 23 22 42 42 H 1.07994 * 119.61541 * 179.74454 * 25 24 23 43 43 H 1.08003 * 119.61946 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7022 -0.2532 -2.4546 7 6 2.1855 -0.9472 -3.6507 8 6 1.6715 -0.2289 -4.9000 9 7 2.1543 -0.9233 -6.0962 10 6 1.8241 -0.4662 -7.3202 11 8 1.1274 0.5204 -7.4315 12 6 2.3203 -1.1809 -8.5507 13 16 1.7123 -0.3309 -10.0285 14 6 2.4210 -1.3486 -11.2802 15 1 3.0240 -2.2015 -11.0054 16 6 2.2054 -1.0536 -12.6192 17 7 1.4709 -0.0138 -12.9539 18 14 2.9573 -2.1321 -13.9461 19 1 2.0121 -3.2242 -14.2910 20 1 3.2295 -1.3130 -15.1544 21 1 4.2282 -2.7165 -13.4477 22 6 2.0324 -0.7104 1.2304 23 6 2.8349 -0.0465 2.1460 24 6 3.2699 -0.7386 3.2657 25 6 2.9008 -2.0610 3.4257 26 7 2.1404 -2.6619 2.5317 27 6 1.7035 -2.0332 1.4578 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.1446 0.5355 -2.5436 32 1 3.2755 -0.9477 -3.6550 33 1 1.8218 -1.9748 -3.6465 34 1 0.5815 -0.2280 -4.8960 35 1 2.0357 0.7985 -4.9040 36 1 2.7112 -1.7126 -6.0071 37 1 3.4104 -1.1822 -8.5553 38 1 1.9558 -2.2081 -8.5460 39 1 1.3198 0.1922 -13.8898 40 1 3.1110 0.9861 1.9924 41 1 3.8933 -0.2520 4.0012 42 1 3.2390 -2.6083 4.2931 43 1 1.0820 -2.5583 0.7476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720021876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:53 Heat of formation + Delta-G solvation = -46.098470 kcal Electronic energy + Delta-G solvation = -24617.799132 eV Core-core repulsion = 20788.954717 eV Total energy + Delta-G solvation = -3828.844416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08654 -39.81494 -39.19261 -36.10963 -35.11647 -34.00752 -32.54636 -32.45125 -30.69113 -29.88474 -28.00772 -25.57137 -25.41548 -23.96929 -23.48693 -22.39862 -20.79676 -20.25651 -18.06939 -17.66865 -17.56806 -16.80526 -16.56083 -16.17185 -16.14512 -15.68845 -15.22219 -15.10966 -14.82186 -14.45876 -14.41019 -14.11041 -13.94052 -13.81111 -13.47976 -13.22559 -13.14248 -12.89641 -12.59337 -12.45770 -12.13468 -12.04428 -11.84760 -11.69467 -11.08086 -11.04665 -10.78635 -10.39128 -10.10033 -9.84597 -9.81061 -9.54923 -9.53100 -9.36523 -9.10466 -9.03373 -8.27737 -6.53362 -6.24134 -3.95089 0.69490 0.89696 2.18153 2.47955 2.99707 3.08536 3.21242 3.27380 3.32202 3.46157 3.72559 3.87046 4.13378 4.18187 4.22733 4.34607 4.46198 4.48725 4.59602 4.62549 4.75883 4.79970 5.03336 5.08046 5.11339 5.11950 5.15373 5.25589 5.38663 5.50540 5.54001 5.57368 5.68187 5.70056 5.81709 5.84680 5.92308 6.10007 6.29429 6.44766 6.98963 7.55981 7.58113 7.61943 7.75272 8.32965 8.49540 9.21439 10.83305 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.037131 B = 0.001471 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.911205 B =19035.885694 C =19471.942060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 H 0.109 0.891 4 C 0.518 3.482 5 O -0.528 6.528 6 N -0.724 5.724 7 C 0.109 3.891 8 C 0.111 3.889 9 N -0.737 5.737 10 C 0.535 3.465 11 O -0.516 6.516 12 C -0.154 4.154 13 S -0.060 6.060 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.122 4.122 23 C -0.068 4.068 24 C -0.176 4.176 25 C 0.097 3.903 26 N -0.486 5.486 27 C 0.134 3.866 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.404 0.596 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 0.712 32.680 32.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 H 0.127 0.873 4 C 0.304 3.696 5 O -0.403 6.403 6 N -0.377 5.377 7 C -0.016 4.016 8 C -0.014 4.014 9 N -0.393 5.393 10 C 0.321 3.679 11 O -0.390 6.390 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.685 4.685 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.124 4.124 23 C -0.094 4.094 24 C -0.196 4.196 25 C -0.059 4.059 26 N -0.194 5.194 27 C -0.023 4.023 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.087 0.875 32.545 32.557 hybrid contribution 1.638 -0.864 -0.900 2.059 sum 1.551 0.011 31.645 31.683 Atomic orbital electron populations 1.21839 0.91377 1.03506 1.03436 1.20218 0.98093 1.00314 0.90160 0.87281 1.20440 0.80239 0.84700 0.84248 1.90768 1.37135 1.25880 1.86556 1.45769 1.54216 1.32466 1.05294 1.21474 1.00126 0.96802 0.83158 1.21314 0.99986 0.96694 0.83389 1.45811 1.55684 1.32781 1.04998 1.20330 0.79588 0.84349 0.83658 1.90708 1.36462 1.25562 1.86243 1.23533 1.04585 1.03938 0.98373 1.85384 1.67737 1.38315 0.91907 1.22871 1.37467 1.15543 0.92583 0.90870 1.24991 0.95025 0.95566 0.97952 1.70018 1.36302 1.25762 1.18205 0.86159 0.79347 0.79771 0.80183 1.20248 1.20736 1.19686 1.20297 0.99888 0.96042 0.96162 1.21469 0.94501 1.00177 0.93228 1.22109 1.02115 0.96336 0.99008 1.22814 0.93472 0.92293 0.97368 1.67732 1.10436 1.38507 1.02738 1.22518 0.95652 0.90802 0.93340 0.91525 0.90898 0.91132 0.76082 0.90625 0.90530 0.90905 0.90945 0.76461 0.89057 0.89042 0.92163 0.84825 0.84699 0.82789 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 8.90 37.16 0.33 -0.22 16 2 C -0.07 -0.36 2.92 -92.92 -0.27 -0.63 16 3 H 0.11 0.36 7.93 -51.93 -0.41 -0.05 16 4 C 0.52 4.28 7.03 -10.98 -0.08 4.21 16 5 O -0.53 -6.61 15.13 5.55 0.08 -6.53 16 6 N -0.72 -4.75 5.44 -60.29 -0.33 -5.08 16 7 C 0.11 0.86 5.79 -4.04 -0.02 0.84 16 8 C 0.11 1.07 5.79 -4.04 -0.02 1.05 16 9 N -0.74 -8.92 5.56 -60.30 -0.33 -9.25 16 10 C 0.53 9.45 7.85 -10.99 -0.09 9.36 16 11 O -0.52 -11.16 15.86 5.55 0.09 -11.07 16 12 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 13 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 14 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 15 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 16 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 18 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.12 -0.92 4.40 -104.48 -0.46 -1.38 16 23 C -0.07 -0.43 9.81 -39.27 -0.39 -0.82 16 24 C -0.18 -1.09 10.11 -39.44 -0.40 -1.49 16 25 C 0.10 0.75 11.18 -17.54 -0.20 0.56 16 26 N -0.49 -5.04 10.36 -13.25 -0.14 -5.18 16 27 C 0.13 1.27 9.13 -17.55 -0.16 1.11 16 28 H 0.07 0.31 7.41 -51.93 -0.38 -0.08 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.18 7.55 -51.93 -0.39 -0.22 16 31 H 0.40 1.65 7.88 -40.82 -0.32 1.32 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 3.77 8.47 -40.82 -0.35 3.43 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.13 0.51 8.00 -52.49 -0.42 0.09 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.15 1.37 7.53 -52.48 -0.40 0.97 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -38.18 385.09 -8.68 -46.86 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.02 Total: 0.23 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.33 Total: -3.02 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.07 Total: -44.69 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.17 Total: -17.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.18 -8.68 -46.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720021876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.766 kcal (2) G-P(sol) polarization free energy of solvation -38.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds