Wall clock time and date at job start Tue Mar 31 2020 20:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47319 * 2 1 4 4 C 1.53003 * 109.47375 * 239.99942 * 2 1 3 5 5 C 1.52996 * 109.47190 * 174.99845 * 4 2 1 6 6 N 1.46501 * 109.46867 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99775 * 180.02562 * 6 5 4 8 8 O 1.21506 * 120.00220 * 0.02562 * 7 6 5 9 9 C 1.48175 * 119.99946 * 180.02562 * 7 6 5 10 10 C 1.39302 * 119.72217 * 179.97438 * 9 7 6 11 11 C 1.38596 * 119.05879 * 179.97438 * 10 9 7 12 12 C 1.38630 * 118.48552 * 0.02562 * 11 10 9 13 13 C 1.38558 * 119.35539 * 0.25409 * 12 11 10 14 14 N 1.31532 * 120.90059 * 359.49177 * 13 12 11 15 15 N 1.46504 * 109.47373 * 119.99942 * 2 1 3 16 16 C 1.34774 * 119.99793 * 275.00130 * 15 2 1 17 17 O 1.21276 * 120.00200 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99861 * 179.97438 * 16 15 2 19 19 S 1.81002 * 109.47038 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99994 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99677 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00312 * 180.02562 * 20 19 18 23 23 N 1.31638 * 119.99699 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00428 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46882 * 89.99818 * 24 22 20 26 26 H 1.48493 * 109.47125 * 210.00169 * 24 22 20 27 27 H 1.48504 * 109.46677 * 330.00018 * 24 22 20 28 28 H 1.08998 * 109.47063 * 60.00167 * 1 2 3 29 29 H 1.09001 * 109.46881 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47171 * 299.99826 * 1 2 3 31 31 H 1.08997 * 109.46803 * 54.99978 * 4 2 1 32 32 H 1.09004 * 109.46933 * 294.99957 * 4 2 1 33 33 H 1.08997 * 109.47139 * 60.00339 * 5 4 2 34 34 H 1.08996 * 109.47421 * 300.00183 * 5 4 2 35 35 H 0.97001 * 120.00408 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.47505 * 0.02670 * 10 9 7 37 37 H 1.07991 * 120.75588 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.31909 * 179.97438 * 12 11 10 39 39 H 1.07995 * 119.54967 * 179.74631 * 13 12 11 40 40 H 0.96997 * 119.99902 * 94.99357 * 15 2 1 41 41 H 1.08996 * 109.47652 * 300.00172 * 18 16 15 42 42 H 1.09005 * 109.46954 * 60.00588 * 18 16 15 43 43 H 0.97000 * 119.99750 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0532 -1.3044 -2.5095 7 6 5.3742 -1.3407 -2.7746 8 8 6.1601 -0.8006 -2.0216 9 6 5.8681 -2.0392 -3.9844 10 6 7.2346 -2.0727 -4.2531 11 6 7.6816 -2.7304 -5.3882 12 6 6.7457 -3.3315 -6.2157 13 6 5.4013 -3.2536 -5.8898 14 7 5.0048 -2.6270 -4.8034 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8591 1.1586 2.4115 18 6 2.6489 -0.7287 3.5877 19 16 2.7092 0.4342 4.9734 20 6 3.3126 -0.6309 6.2407 21 1 3.5228 -1.6672 6.0205 22 6 3.5179 -0.1383 7.5220 23 7 3.2612 1.1246 7.7905 24 14 4.1569 -1.2677 8.8658 25 1 5.6413 -1.2283 8.8809 26 1 3.6362 -0.8160 10.1810 27 1 3.7011 -2.6564 8.6033 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2617 -2.1369 32 1 1.7517 -1.7716 -1.2055 33 1 3.9995 -1.0728 -0.4260 34 1 3.8532 0.4370 -1.3573 35 1 3.4259 -1.7359 -3.1105 36 1 7.9359 -1.5937 -3.5859 37 1 8.7347 -2.7729 -5.6232 38 1 7.0612 -3.8515 -7.1081 39 1 4.6692 -3.7172 -6.5343 40 1 2.2490 -1.6318 1.1526 41 1 1.9762 -1.5505 3.8326 42 1 3.6482 -1.1212 3.3986 43 1 3.4043 1.4688 8.6860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721001348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:57 Heat of formation + Delta-G solvation = -75.939709 kcal Electronic energy + Delta-G solvation = -24964.438174 eV Core-core repulsion = 21134.299745 eV Total energy + Delta-G solvation = -3830.138429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62966 -40.82004 -39.99302 -37.70460 -35.73464 -34.59331 -33.66649 -33.00976 -32.42450 -30.43020 -29.66559 -27.66770 -26.05346 -24.53443 -23.99317 -22.56222 -21.85659 -21.52342 -19.86791 -19.22841 -17.95003 -17.85250 -17.29252 -16.99452 -16.88830 -16.68594 -16.46131 -16.33239 -15.95894 -15.90262 -15.20395 -14.95073 -14.79408 -14.63908 -14.39380 -14.27007 -14.11052 -13.94888 -13.32195 -13.17681 -13.03583 -12.92532 -12.89994 -12.61100 -12.47874 -12.43763 -11.94492 -11.73012 -11.47399 -11.15284 -10.96220 -10.91269 -10.59720 -10.38783 -10.28733 -10.14861 -10.03868 -8.67303 -8.35491 -6.13534 -0.38540 0.24366 1.26355 1.41452 1.46205 1.56931 1.63190 1.65795 1.96749 2.25627 2.31524 2.85788 2.98367 3.09469 3.31651 3.70001 3.74971 3.90806 3.97426 4.00751 4.04414 4.07243 4.09600 4.28283 4.41900 4.46271 4.49654 4.50240 4.60397 4.76226 4.82114 4.86994 4.98995 5.07166 5.12400 5.17113 5.29950 5.33989 5.40666 5.55893 5.63046 6.18867 6.32598 6.52098 6.76740 7.05554 7.07575 7.27120 8.73773 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.001968 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.802172 B =14221.568005 C =15666.171064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.066 0.934 4 C -0.118 4.118 5 C 0.115 3.885 6 N -0.695 5.695 7 C 0.560 3.440 8 O -0.576 6.576 9 C 0.051 3.949 10 C -0.128 4.128 11 C -0.081 4.081 12 C -0.135 4.135 13 C 0.091 3.909 14 N -0.473 5.473 15 N -0.710 5.710 16 C 0.535 3.465 17 O -0.564 6.564 18 C -0.131 4.131 19 S -0.151 6.151 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.258 1.258 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.422 0.578 36 H 0.136 0.864 37 H 0.170 0.830 38 H 0.180 0.820 39 H 0.196 0.804 40 H 0.414 0.586 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 -14.781 -34.657 37.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.084 0.916 4 C -0.156 4.156 5 C -0.008 4.008 6 N -0.347 5.347 7 C 0.346 3.654 8 O -0.455 6.455 9 C -0.086 4.086 10 C -0.149 4.149 11 C -0.107 4.107 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.186 5.186 15 N -0.365 5.365 16 C 0.321 3.679 17 O -0.442 6.442 18 C -0.283 4.283 19 S 0.076 5.924 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.182 1.182 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.261 0.739 36 H 0.154 0.846 37 H 0.188 0.812 38 H 0.197 0.803 39 H 0.213 0.787 40 H 0.251 0.749 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.321 -12.246 -33.683 35.864 hybrid contribution 1.510 -1.855 0.848 2.538 sum 2.831 -14.100 -32.835 35.846 Atomic orbital electron populations 1.22115 0.93742 1.03270 1.02356 1.20973 0.95068 0.96817 0.83335 0.91615 1.21996 0.92135 1.03631 0.97797 1.21416 0.95577 0.96772 0.87073 1.45706 1.06899 1.55332 1.26754 1.18379 0.83013 0.79446 0.84568 1.90804 1.56796 1.47690 1.50253 1.20907 0.91789 1.00312 0.95550 1.22270 0.95425 0.98478 0.98748 1.22045 1.02690 0.93786 0.92146 1.22876 0.93716 0.97789 1.01099 1.23490 0.96412 0.94488 0.92527 1.67500 1.38794 1.07652 1.04610 1.45919 1.67532 1.14516 1.08501 1.19999 0.76637 0.86574 0.84692 1.90685 1.50696 1.17676 1.85184 1.23392 1.05305 1.03286 0.96293 1.85549 1.86640 1.17429 1.02752 1.23207 1.50986 0.98460 0.96850 0.90022 1.26147 0.95066 0.97265 1.00764 1.70190 1.46755 1.15501 1.22277 0.84944 0.78451 0.78193 0.76325 1.19408 1.20125 1.18162 0.89326 0.90475 0.94957 0.86912 0.87749 0.92384 0.92904 0.73941 0.84584 0.81222 0.80287 0.78697 0.74890 0.87167 0.87743 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.48 71.98 0.68 -2.24 16 2 C 0.14 2.96 2.57 44.99 0.12 3.08 16 3 H 0.07 1.76 7.58 -2.38 -0.02 1.74 16 4 C -0.12 -1.48 4.87 30.59 0.15 -1.33 16 5 C 0.12 2.25 5.56 86.38 0.48 2.73 16 6 N -0.70 -12.69 5.55 -465.67 -2.58 -15.27 16 7 C 0.56 13.62 7.81 86.88 0.68 14.29 16 8 O -0.58 -18.91 16.32 -3.74 -0.06 -18.97 16 9 C 0.05 0.98 6.75 41.91 0.28 1.26 16 10 C -0.13 -2.08 9.63 22.61 0.22 -1.86 16 11 C -0.08 -0.68 10.17 22.45 0.23 -0.45 16 12 C -0.14 -0.65 10.11 22.44 0.23 -0.42 16 13 C 0.09 0.69 11.18 84.81 0.95 1.64 16 14 N -0.47 -6.91 9.54 -184.91 -1.76 -8.68 16 15 N -0.71 -17.79 4.53 -442.52 -2.00 -19.79 16 16 C 0.54 20.22 7.81 87.66 0.68 20.90 16 17 O -0.56 -26.68 15.52 -3.02 -0.05 -26.73 16 18 C -0.13 -5.41 6.16 71.24 0.44 -4.97 16 19 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 20 C -0.55 -32.10 9.50 67.95 0.65 -31.46 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -57.10 13.22 21.65 0.29 -56.81 16 24 Si 1.00 44.65 29.55 68.60 2.03 46.67 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 27 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 1.34 7.75 -2.39 -0.02 1.33 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.42 5.46 7.80 -92.71 -0.72 4.74 16 36 H 0.14 2.45 7.64 -2.91 -0.02 2.43 16 37 H 0.17 0.40 8.06 -2.92 -0.02 0.38 16 38 H 0.18 -0.50 8.06 -2.91 -0.02 -0.53 16 39 H 0.20 0.10 8.06 -2.91 -0.02 0.07 16 40 H 0.41 7.65 8.60 -92.71 -0.80 6.85 16 41 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 42 H 0.10 3.97 8.14 -2.39 -0.02 3.96 16 43 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -89.14 388.04 0.46 -88.68 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -0.48 Total: 18.33 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.25 Total: 2.37 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -6.07 Total: -100.56 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.11 Total: -45.70 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -89.14 0.46 -88.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721001348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.739 kcal (2) G-P(sol) polarization free energy of solvation -89.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds