Wall clock time and date at job start Tue Mar 31 2020 20:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47368 * 2 1 4 4 N 1.46498 * 109.47279 * 120.00579 * 2 1 3 5 5 C 1.36939 * 120.00068 * 274.99986 * 4 2 1 6 6 H 1.08003 * 119.99644 * 0.27250 * 5 4 2 7 7 C 1.38805 * 119.99993 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00074 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47314 * 89.99943 * 9 7 5 11 11 H 1.48498 * 109.46992 * 210.00107 * 9 7 5 12 12 H 1.48501 * 109.47092 * 329.99838 * 9 7 5 13 13 C 1.53000 * 109.46725 * 240.00256 * 2 1 3 14 14 H 1.09004 * 110.88833 * 303.15739 * 13 2 1 15 15 C 1.55159 * 111.00522 * 179.27802 * 13 2 1 16 16 C 1.54318 * 102.94581 * 206.42775 * 15 13 2 17 17 N 1.47023 * 107.27420 * 22.18839 * 16 15 13 18 18 C 1.34776 * 125.65201 * 181.00524 * 17 16 15 19 19 O 1.21679 * 119.99842 * 180.02562 * 18 17 16 20 20 C 1.46726 * 119.99779 * 0.03087 * 18 17 16 21 21 C 1.34882 * 125.05496 * 180.02562 * 20 18 17 22 22 C 1.38935 * 113.65293 * 179.97438 * 21 20 18 23 23 C 1.47334 * 122.95838 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00158 * 179.97438 * 23 22 21 25 25 O 1.21625 * 120.00292 * 0.02562 * 23 22 21 26 26 C 1.36654 * 114.07845 * 0.02562 * 22 21 20 27 27 S 1.70596 * 110.53061 * 359.72283 * 26 22 21 28 28 C 1.47473 * 108.71780 * 1.02970 * 17 16 15 29 29 H 1.08998 * 109.47237 * 54.72367 * 1 2 3 30 30 H 1.08997 * 109.47373 * 174.72836 * 1 2 3 31 31 H 1.08997 * 109.46935 * 294.72982 * 1 2 3 32 32 H 0.97002 * 119.99975 * 94.99579 * 4 2 1 33 33 H 0.97010 * 119.99781 * 179.97438 * 8 7 5 34 34 H 1.09004 * 110.71790 * 324.78712 * 15 13 2 35 35 H 1.08997 * 110.72422 * 87.87976 * 15 13 2 36 36 H 1.08996 * 109.88660 * 141.60873 * 16 15 13 37 37 H 1.09000 * 109.88142 * 262.77288 * 16 15 13 38 38 H 1.08003 * 123.16926 * 0.02562 * 21 20 18 39 39 H 0.97004 * 119.99366 * 0.02562 * 24 23 22 40 40 H 0.96994 * 120.00512 * 180.02562 * 24 23 22 41 41 H 1.08000 * 124.73408 * 180.02562 * 26 22 21 42 42 H 1.09007 * 110.39973 * 217.08490 * 28 17 16 43 43 H 1.08999 * 110.34928 * 94.75110 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0077 2.3757 6 1 1.8881 1.0391 2.4254 7 6 2.6114 -0.6623 3.5091 8 7 2.9235 -1.9396 3.4501 9 14 2.7905 0.2697 5.1182 10 1 1.5228 0.1795 5.8862 11 1 3.8947 -0.3243 5.9139 12 1 3.0965 1.6946 4.8334 13 6 2.0399 -0.7212 -1.2493 14 1 1.6443 -1.7356 -1.3012 15 6 3.5908 -0.7262 -1.2945 16 6 3.8923 -0.8275 -2.8046 17 7 2.7034 -0.3424 -3.5206 18 6 2.5604 -0.2886 -4.8597 19 8 1.5275 0.1338 -5.3448 20 6 3.6502 -0.7396 -5.7325 21 6 3.6171 -0.7304 -7.0809 22 6 4.7803 -1.2100 -7.6703 23 6 4.9647 -1.2911 -9.1298 24 7 6.1191 -1.7662 -9.6378 25 8 4.0755 -0.9285 -9.8762 26 6 5.7377 -1.6008 -6.7770 27 16 5.1951 -1.3649 -5.1769 28 6 1.6931 0.0763 -2.5313 29 1 -0.3633 0.5935 -0.8389 30 1 -0.3634 -1.0233 -0.0944 31 1 -0.3633 0.4299 0.9334 32 1 2.2490 -1.6319 1.1524 33 1 3.2468 -2.3969 4.2422 34 1 3.9916 0.1999 -0.8825 35 1 3.9895 -1.5886 -0.7602 36 1 4.7535 -0.2072 -3.0531 37 1 4.0899 -1.8649 -3.0744 38 1 2.7669 -0.3823 -7.6488 39 1 6.8284 -2.0551 -9.0425 40 1 6.2407 -1.8193 -10.5987 41 1 6.7050 -1.9985 -7.0464 42 1 0.6922 -0.1802 -2.8785 43 1 1.7675 1.1474 -2.3435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724561723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:05 Heat of formation + Delta-G solvation = -29.251840 kcal Electronic energy + Delta-G solvation = -26077.043613 eV Core-core repulsion = 22248.929722 eV Total energy + Delta-G solvation = -3828.113891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40656 -39.97308 -38.09690 -36.92213 -35.29589 -34.16468 -32.56551 -30.91603 -30.18597 -29.21505 -27.57292 -26.01075 -24.80518 -23.62990 -22.36144 -21.54962 -20.17525 -19.72250 -19.38355 -18.53389 -17.48891 -17.34256 -17.06414 -16.32438 -16.09392 -15.47468 -15.18760 -14.94289 -14.49494 -14.16954 -13.91385 -13.62259 -13.54260 -13.26999 -13.17846 -13.02175 -12.77906 -12.58476 -12.44238 -12.20107 -11.90457 -11.47455 -11.23001 -10.93291 -10.78447 -10.64924 -10.52701 -10.36589 -10.26452 -10.17785 -10.15110 -9.90027 -9.68185 -9.40571 -9.05377 -8.95951 -8.68846 -7.01309 -5.81520 -3.09989 0.00407 1.00943 1.34258 1.39664 2.74118 2.80577 3.12496 3.14604 3.40119 3.46067 3.46914 4.20521 4.41593 4.53800 4.59792 4.64254 4.80137 4.83545 4.97539 5.17881 5.32256 5.35165 5.48566 5.56455 5.62484 5.82089 5.82616 5.83785 5.90153 5.98078 6.13465 6.15348 6.30426 6.32936 6.38308 6.52729 6.59977 6.82562 6.86212 7.06025 7.33699 7.66387 7.83282 7.95762 8.37025 9.48726 10.05164 10.40246 11.40978 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.002233 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.905913 B =12536.868757 C =13348.954895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.103 4.103 14 H 0.083 0.917 15 C -0.109 4.109 16 C 0.082 3.918 17 N -0.612 5.612 18 C 0.601 3.399 19 O -0.528 6.528 20 C -0.264 4.264 21 C -0.015 4.015 22 C -0.165 4.165 23 C 0.583 3.417 24 N -0.851 5.851 25 O -0.536 6.536 26 C -0.224 4.224 27 S 0.275 5.725 28 C 0.116 3.884 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.163 0.837 39 H 0.400 0.600 40 H 0.406 0.594 41 H 0.173 0.827 42 H 0.081 0.919 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.232 -1.412 -21.313 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.101 0.899 15 C -0.147 4.147 16 C -0.042 4.042 17 N -0.345 5.345 18 C 0.389 3.611 19 O -0.406 6.406 20 C -0.384 4.384 21 C -0.047 4.047 22 C -0.183 4.183 23 C 0.367 3.633 24 N -0.415 5.415 25 O -0.413 6.413 26 C -0.364 4.364 27 S 0.544 5.456 28 C -0.006 4.006 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.181 0.819 39 H 0.228 0.772 40 H 0.237 0.763 41 H 0.191 0.809 42 H 0.099 0.901 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.673 -1.029 -20.394 22.595 hybrid contribution 0.216 0.041 -0.632 0.670 sum 9.889 -0.988 -21.027 23.257 Atomic orbital electron populations 1.22494 0.99142 1.00683 1.00540 1.20128 0.91872 0.95181 0.85326 0.93168 1.42362 1.78179 1.10660 1.05106 1.19210 1.36316 0.93922 0.87262 0.91212 1.24714 1.02272 0.95951 0.97970 1.69654 1.51014 1.08600 1.28853 0.86226 0.77291 0.78814 0.84065 1.21803 1.21841 1.20797 1.22711 0.95235 1.00160 0.94175 0.89903 1.22534 0.96378 1.04721 0.91051 1.22331 0.87788 0.99220 0.94890 1.48411 1.18291 1.63311 1.04456 1.16516 0.85797 0.78558 0.80260 1.90850 1.28441 1.47227 1.74125 1.24188 1.00611 1.15736 0.97861 1.20296 0.97894 0.94291 0.92174 1.18990 0.95801 1.09516 0.93975 1.17664 0.82019 0.76432 0.87220 1.43663 1.17827 1.68204 1.11769 1.90866 1.41669 1.48248 1.60491 1.26493 1.04062 1.04844 1.00997 1.83657 1.05635 1.54471 1.01815 1.22384 0.91991 0.99265 0.86974 0.94336 0.93543 0.92496 0.78286 0.93554 0.89752 0.89024 0.90947 0.90930 0.81920 0.77152 0.76274 0.80919 0.90081 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.27 37.16 0.34 -2.52 16 2 C 0.19 3.30 2.41 -67.93 -0.16 3.13 16 3 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 4 N -0.72 -16.42 4.80 -53.43 -0.26 -16.67 16 5 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 6 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 9 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 C -0.10 -1.49 2.62 -88.47 -0.23 -1.72 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.11 -1.43 6.11 -24.90 -0.15 -1.58 16 16 C 0.08 0.88 5.16 -3.07 -0.02 0.87 16 17 N -0.61 -8.01 3.33 -172.01 -0.57 -8.58 16 18 C 0.60 8.66 7.82 -12.83 -0.10 8.56 16 19 O -0.53 -9.41 17.05 5.21 0.09 -9.32 16 20 C -0.26 -3.06 6.31 -37.35 -0.24 -3.30 16 21 C -0.02 -0.18 9.47 -40.51 -0.38 -0.56 16 22 C -0.17 -1.55 5.82 -106.51 -0.62 -2.17 16 23 C 0.58 5.72 8.06 -12.56 -0.10 5.62 16 24 N -0.85 -4.23 8.84 30.41 0.27 -3.96 16 25 O -0.54 -7.61 17.53 5.26 0.09 -7.52 16 26 C -0.22 -1.42 10.41 30.16 0.31 -1.11 16 27 S 0.27 2.06 18.33 -107.50 -1.97 0.09 16 28 C 0.12 1.59 5.67 -2.50 -0.01 1.57 16 29 H 0.04 0.56 7.70 -51.93 -0.40 0.16 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.38 9.29 7.80 -40.82 -0.32 8.97 16 33 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 0.67 6.95 -51.93 -0.36 0.31 16 37 H 0.07 0.69 6.82 -51.93 -0.35 0.33 16 38 H 0.16 2.15 7.95 -52.48 -0.42 1.73 16 39 H 0.40 0.74 7.29 -40.82 -0.30 0.44 16 40 H 0.41 1.54 8.93 -40.82 -0.36 1.17 16 41 H 0.17 0.41 6.99 -52.49 -0.37 0.05 16 42 H 0.08 1.15 8.04 -51.92 -0.42 0.73 16 43 H 0.07 0.99 7.99 -51.93 -0.42 0.58 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -34.20 369.59 -8.47 -42.66 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.78 Total: 7.16 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.61 Total: 0.07 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.16 Total: -55.26 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.84 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.97 Total: 0.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.20 -8.47 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724561723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.410 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds