Wall clock time and date at job start Tue Mar 31 2020 20:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46931 * 2 1 4 4 N 1.46498 * 109.47124 * 240.00725 * 2 1 3 5 5 C 1.36940 * 120.00068 * 84.99835 * 4 2 1 6 6 H 1.07994 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99646 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99715 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00262 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46917 * 89.99876 * 9 7 5 11 11 H 1.48502 * 109.47117 * 209.99945 * 9 7 5 12 12 H 1.48494 * 109.46933 * 330.00279 * 9 7 5 13 13 C 1.52996 * 109.47435 * 120.00383 * 2 1 3 14 14 H 1.08994 * 110.88246 * 56.90986 * 13 2 1 15 15 C 1.55153 * 111.00573 * 180.79740 * 13 2 1 16 16 C 1.54318 * 102.94234 * 153.61365 * 15 13 2 17 17 N 1.47025 * 107.27520 * 337.80646 * 16 15 13 18 18 C 1.34770 * 125.64844 * 178.90789 * 17 16 15 19 19 O 1.21687 * 119.99472 * 180.02562 * 18 17 16 20 20 C 1.46733 * 120.00360 * 0.02562 * 18 17 16 21 21 C 1.34874 * 125.05408 * 180.02562 * 20 18 17 22 22 C 1.38936 * 113.65314 * 180.02562 * 21 20 18 23 23 C 1.47335 * 122.96423 * 179.97438 * 22 21 20 24 24 N 1.34777 * 120.00268 * 180.02562 * 23 22 21 25 25 O 1.21620 * 119.99821 * 0.02562 * 23 22 21 26 26 C 1.36660 * 114.07751 * 0.23167 * 22 21 20 27 27 S 1.70599 * 110.52986 * 359.64464 * 26 22 21 28 28 C 1.47422 * 108.69866 * 359.16680 * 17 16 15 29 29 H 1.08996 * 109.47269 * 305.26426 * 1 2 3 30 30 H 1.09001 * 109.47048 * 65.26722 * 1 2 3 31 31 H 1.09000 * 109.46852 * 185.26437 * 1 2 3 32 32 H 0.96999 * 119.99973 * 264.99951 * 4 2 1 33 33 H 0.97003 * 120.00505 * 179.97438 * 8 7 5 34 34 H 1.08995 * 110.72072 * 35.24741 * 15 13 2 35 35 H 1.09006 * 110.86640 * 272.04670 * 15 13 2 36 36 H 1.09004 * 109.88135 * 218.38260 * 16 15 13 37 37 H 1.09006 * 110.01361 * 97.29813 * 16 15 13 38 38 H 1.07998 * 123.17567 * 0.04257 * 21 20 18 39 39 H 0.96993 * 119.99821 * 180.02562 * 24 23 22 40 40 H 0.97002 * 119.99376 * 359.73006 * 24 23 22 41 41 H 1.07995 * 124.73877 * 179.76075 * 26 22 21 42 42 H 1.08997 * 110.36572 * 142.73999 * 28 17 16 43 43 H 1.09004 * 110.36980 * 265.06653 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1962 5 6 2.1491 -0.0072 -2.3758 6 1 1.8919 1.0406 -2.4243 7 6 2.6123 -0.6614 -3.5091 8 7 2.7375 -0.0048 -4.6429 9 14 3.0580 -2.4735 -3.4250 10 1 1.8613 -3.2928 -3.7443 11 1 4.1336 -2.7648 -4.4066 12 1 3.5332 -2.8034 -2.0574 13 6 2.0401 -0.7213 1.2491 14 1 1.6454 -1.7360 1.3002 15 6 3.5909 -0.7246 1.2952 16 6 3.8917 -0.8274 2.8053 17 7 2.7018 -0.3445 3.5213 18 6 2.5575 -0.2941 4.8603 19 8 1.5235 0.1260 5.3453 20 6 3.6470 -0.7457 5.7332 21 6 3.6121 -0.7407 7.0815 22 6 4.7753 -1.2200 7.6710 23 6 4.9585 -1.3042 9.1305 24 7 6.1131 -1.7788 9.6386 25 8 4.0677 -0.9455 9.8768 26 6 5.7368 -1.6011 6.7778 27 16 5.1913 -1.3727 5.1776 28 6 1.6905 0.0697 2.5318 29 1 -0.3633 0.5933 0.8390 30 1 -0.3633 0.4300 -0.9334 31 1 -0.3633 -1.0233 0.0943 32 1 2.2490 -1.6316 -1.1528 33 1 3.0616 -0.4618 -5.4348 34 1 3.9909 0.2024 0.8845 35 1 3.9933 -1.5861 0.7622 36 1 4.7521 -0.2065 3.0550 37 1 4.0919 -1.8641 3.0760 38 1 2.7602 -0.3969 7.6493 39 1 6.2334 -1.8346 10.5994 40 1 6.8220 -2.0686 9.0432 41 1 6.7060 -1.9940 7.0473 42 1 0.6909 -0.1920 2.8788 43 1 1.7595 1.1413 2.3445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724561755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:08 Heat of formation + Delta-G solvation = -24.937019 kcal Electronic energy + Delta-G solvation = -26162.340001 eV Core-core repulsion = 22334.413215 eV Total energy + Delta-G solvation = -3827.926786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47204 -40.04373 -38.20175 -36.98914 -35.46950 -34.20444 -32.57657 -31.08295 -30.27381 -29.67448 -27.81028 -26.06904 -24.86338 -23.46214 -22.42071 -21.47789 -20.22449 -19.94279 -19.44001 -18.62434 -17.68987 -17.48142 -17.27962 -16.36372 -16.16251 -15.56345 -15.22754 -15.02672 -14.50730 -14.32021 -13.90557 -13.84787 -13.50273 -13.40559 -13.21096 -13.11472 -12.75449 -12.66523 -12.53223 -12.34031 -12.03376 -11.76914 -11.42456 -11.08167 -10.89679 -10.66226 -10.61608 -10.44393 -10.33915 -10.20783 -10.18764 -9.99425 -9.63416 -9.46113 -9.11136 -8.99560 -8.76376 -7.33395 -5.81508 -3.17462 -0.05062 0.95111 1.29356 1.33767 2.66628 2.75232 3.07227 3.10149 3.30287 3.34774 3.40869 4.13267 4.35928 4.51543 4.53659 4.55833 4.68489 4.74937 4.83717 5.04374 5.22790 5.29825 5.39673 5.48460 5.51989 5.60651 5.72372 5.75795 5.77937 5.86213 6.02690 6.04697 6.13691 6.26846 6.29322 6.36737 6.44270 6.73307 6.82357 6.96950 7.25690 7.79439 7.89012 7.94521 8.37192 9.15451 9.87717 10.07312 11.36750 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.002403 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.904533 B =11649.089058 C =12531.745672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.112 4.112 16 C 0.082 3.918 17 N -0.612 5.612 18 C 0.602 3.398 19 O -0.526 6.526 20 C -0.264 4.264 21 C -0.014 4.014 22 C -0.165 4.165 23 C 0.582 3.418 24 N -0.851 5.851 25 O -0.535 6.535 26 C -0.223 4.223 27 S 0.272 5.728 28 C 0.117 3.883 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.164 0.836 39 H 0.406 0.594 40 H 0.400 0.600 41 H 0.174 0.826 42 H 0.082 0.918 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.510 -5.560 24.229 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.581 5.581 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.203 1.203 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.150 4.150 16 C -0.042 4.042 17 N -0.345 5.345 18 C 0.389 3.611 19 O -0.404 6.404 20 C -0.384 4.384 21 C -0.046 4.046 22 C -0.182 4.182 23 C 0.366 3.634 24 N -0.415 5.415 25 O -0.412 6.412 26 C -0.363 4.363 27 S 0.541 5.459 28 C -0.005 4.005 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.181 0.819 39 H 0.238 0.762 40 H 0.228 0.772 41 H 0.191 0.809 42 H 0.101 0.899 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.936 -5.119 23.268 25.813 hybrid contribution 0.418 -1.424 1.463 2.084 sum 10.354 -6.543 24.731 27.598 Atomic orbital electron populations 1.22464 0.98590 1.00709 1.01131 1.20095 0.92084 0.95464 0.84265 0.92268 1.42727 1.79778 1.09415 1.06979 1.19042 1.36935 0.95612 0.85500 0.89185 1.24672 1.01512 0.97406 0.95571 1.69695 1.52587 1.35562 1.00260 0.86563 0.78108 0.86937 0.76912 1.21211 1.21869 1.20350 1.22714 0.95228 1.00255 0.94540 0.89993 1.22568 0.96363 1.04691 0.91385 1.22318 0.87961 0.99287 0.94658 1.48376 1.18079 1.63581 1.04488 1.16512 0.85814 0.78532 0.80207 1.90859 1.28340 1.47164 1.74085 1.24172 1.00626 1.15746 0.97857 1.20301 0.97941 0.94152 0.92169 1.19002 0.95676 1.09546 0.94014 1.17656 0.82039 0.76460 0.87199 1.43662 1.17834 1.68166 1.11790 1.90867 1.41542 1.48320 1.60480 1.26487 1.03998 1.04877 1.00918 1.83625 1.05682 1.54640 1.01938 1.22305 0.92023 0.99455 0.86724 0.93969 0.91984 0.93639 0.80714 0.93062 0.89324 0.89477 0.90770 0.90996 0.81876 0.76246 0.77157 0.80900 0.89946 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.27 37.16 0.34 -2.39 16 2 C 0.19 3.23 2.41 -67.93 -0.16 3.06 16 3 H 0.06 1.05 8.03 -51.93 -0.42 0.63 16 4 N -0.75 -15.87 4.60 -53.43 -0.25 -16.12 16 5 C -0.24 -6.33 10.41 -15.06 -0.16 -6.49 16 6 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 8 N -0.93 -28.27 13.97 55.49 0.78 -27.50 16 9 Si 0.88 20.94 27.74 -169.99 -4.71 16.22 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -5.98 6.52 56.52 0.37 -5.61 16 13 C -0.11 -1.45 2.61 -88.59 -0.23 -1.68 16 14 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.11 -1.36 6.12 -24.90 -0.15 -1.51 16 16 C 0.08 0.82 5.17 -3.07 -0.02 0.81 16 17 N -0.61 -7.59 3.33 -172.17 -0.57 -8.17 16 18 C 0.60 8.32 7.82 -12.83 -0.10 8.22 16 19 O -0.53 -9.09 17.05 5.20 0.09 -9.00 16 20 C -0.26 -2.93 6.31 -37.35 -0.24 -3.16 16 21 C -0.01 -0.16 9.47 -40.52 -0.38 -0.55 16 22 C -0.16 -1.48 5.82 -106.51 -0.62 -2.10 16 23 C 0.58 5.54 8.06 -12.56 -0.10 5.43 16 24 N -0.85 -3.99 8.84 30.41 0.27 -3.72 16 25 O -0.53 -7.44 17.53 5.26 0.09 -7.35 16 26 C -0.22 -1.32 10.41 30.16 0.31 -1.01 16 27 S 0.27 1.90 18.32 -107.50 -1.97 -0.07 16 28 C 0.12 1.51 5.67 -2.64 -0.01 1.49 16 29 H 0.04 0.58 7.70 -51.93 -0.40 0.18 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.36 7.54 5.66 -40.82 -0.23 7.31 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.09 1.15 8.04 -51.93 -0.42 0.73 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.63 6.96 -51.93 -0.36 0.27 16 37 H 0.07 0.62 6.79 -51.93 -0.35 0.27 16 38 H 0.16 2.08 7.95 -52.49 -0.42 1.67 16 39 H 0.41 1.44 8.93 -40.82 -0.36 1.07 16 40 H 0.40 0.62 7.29 -40.82 -0.30 0.33 16 41 H 0.17 0.35 6.99 -52.49 -0.37 -0.02 16 42 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 43 H 0.08 0.97 7.99 -51.93 -0.42 0.56 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -35.34 366.45 -8.11 -43.45 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.74 Total: 6.59 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.61 Total: 0.14 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.23 Total: -55.50 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.22 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.97 Total: -0.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.34 -8.11 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724561755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.517 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds