Wall clock time and date at job start Tue Mar 31 2020 20:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46931 * 2 1 4 4 N 1.46498 * 109.47124 * 240.00725 * 2 1 3 5 5 C 1.36940 * 120.00068 * 84.99835 * 4 2 1 6 6 H 1.07994 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99646 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99715 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00262 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46917 * 89.99876 * 9 7 5 11 11 H 1.48502 * 109.47117 * 209.99945 * 9 7 5 12 12 H 1.48494 * 109.46933 * 330.00279 * 9 7 5 13 13 C 1.52996 * 109.47435 * 120.00383 * 2 1 3 14 14 H 1.08994 * 110.88246 * 56.90986 * 13 2 1 15 15 C 1.55153 * 111.00573 * 180.79740 * 13 2 1 16 16 C 1.54318 * 102.94234 * 153.61365 * 15 13 2 17 17 N 1.47025 * 107.27520 * 337.80646 * 16 15 13 18 18 C 1.34770 * 125.64844 * 178.90789 * 17 16 15 19 19 O 1.21687 * 119.99472 * 180.02562 * 18 17 16 20 20 C 1.46733 * 120.00360 * 0.02562 * 18 17 16 21 21 C 1.34874 * 125.05408 * 180.02562 * 20 18 17 22 22 C 1.38936 * 113.65314 * 180.02562 * 21 20 18 23 23 C 1.47335 * 122.96423 * 179.97438 * 22 21 20 24 24 N 1.34777 * 120.00268 * 180.02562 * 23 22 21 25 25 O 1.21620 * 119.99821 * 0.02562 * 23 22 21 26 26 C 1.36660 * 114.07751 * 0.23167 * 22 21 20 27 27 S 1.70599 * 110.52986 * 359.64464 * 26 22 21 28 28 C 1.47422 * 108.69866 * 359.16680 * 17 16 15 29 29 H 1.08996 * 109.47269 * 305.26426 * 1 2 3 30 30 H 1.09001 * 109.47048 * 65.26722 * 1 2 3 31 31 H 1.09000 * 109.46852 * 185.26437 * 1 2 3 32 32 H 0.96999 * 119.99973 * 264.99951 * 4 2 1 33 33 H 0.97003 * 120.00505 * 179.97438 * 8 7 5 34 34 H 1.08995 * 110.72072 * 35.24741 * 15 13 2 35 35 H 1.09006 * 110.86640 * 272.04670 * 15 13 2 36 36 H 1.09004 * 109.88135 * 218.38260 * 16 15 13 37 37 H 1.09006 * 110.01361 * 97.29813 * 16 15 13 38 38 H 1.07998 * 123.17567 * 0.04257 * 21 20 18 39 39 H 0.96993 * 119.99821 * 180.02562 * 24 23 22 40 40 H 0.97002 * 119.99376 * 359.73006 * 24 23 22 41 41 H 1.07995 * 124.73877 * 179.76075 * 26 22 21 42 42 H 1.08997 * 110.36572 * 142.73999 * 28 17 16 43 43 H 1.09004 * 110.36980 * 265.06653 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1962 5 6 2.1491 -0.0072 -2.3758 6 1 1.8919 1.0406 -2.4243 7 6 2.6123 -0.6614 -3.5091 8 7 2.7375 -0.0048 -4.6429 9 14 3.0580 -2.4735 -3.4250 10 1 1.8613 -3.2928 -3.7443 11 1 4.1336 -2.7648 -4.4066 12 1 3.5332 -2.8034 -2.0574 13 6 2.0401 -0.7213 1.2491 14 1 1.6454 -1.7360 1.3002 15 6 3.5909 -0.7246 1.2952 16 6 3.8917 -0.8274 2.8053 17 7 2.7018 -0.3445 3.5213 18 6 2.5575 -0.2941 4.8603 19 8 1.5235 0.1260 5.3453 20 6 3.6470 -0.7457 5.7332 21 6 3.6121 -0.7407 7.0815 22 6 4.7753 -1.2200 7.6710 23 6 4.9585 -1.3042 9.1305 24 7 6.1131 -1.7788 9.6386 25 8 4.0677 -0.9455 9.8768 26 6 5.7368 -1.6011 6.7778 27 16 5.1913 -1.3727 5.1776 28 6 1.6905 0.0697 2.5318 29 1 -0.3633 0.5933 0.8390 30 1 -0.3633 0.4300 -0.9334 31 1 -0.3633 -1.0233 0.0943 32 1 2.2490 -1.6316 -1.1528 33 1 3.0616 -0.4618 -5.4348 34 1 3.9909 0.2024 0.8845 35 1 3.9933 -1.5861 0.7622 36 1 4.7521 -0.2065 3.0550 37 1 4.0919 -1.8641 3.0760 38 1 2.7602 -0.3969 7.6493 39 1 6.2334 -1.8346 10.5994 40 1 6.8220 -2.0686 9.0432 41 1 6.7060 -1.9940 7.0473 42 1 0.6909 -0.1920 2.8788 43 1 1.7595 1.1413 2.3445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724561755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:07 Heat of formation + Delta-G solvation = -52.754022 kcal Electronic energy + Delta-G solvation = -26163.546237 eV Core-core repulsion = 22334.413215 eV Total energy + Delta-G solvation = -3829.133022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39317 -40.84290 -39.28182 -37.83886 -36.92472 -34.82298 -34.31030 -32.47039 -31.18945 -30.97290 -28.97236 -26.83449 -26.07504 -24.91829 -23.30262 -22.78231 -21.32300 -20.99301 -20.14147 -19.65299 -19.28048 -18.15598 -17.99898 -17.49695 -17.02307 -16.68731 -16.26598 -16.02200 -15.81869 -15.34058 -15.09241 -15.04363 -14.75147 -14.30752 -14.23313 -14.10504 -13.93904 -13.74253 -13.65282 -13.53188 -13.44164 -13.07843 -12.82317 -12.43291 -12.23535 -11.96448 -11.88718 -11.72488 -11.67831 -11.41314 -11.35354 -11.13403 -10.92577 -10.76444 -10.23078 -9.80727 -9.58811 -9.26134 -7.94588 -5.27739 -0.70501 0.30016 0.51752 0.70177 1.42766 1.48032 1.55129 1.72338 1.85132 2.31570 2.55701 2.55961 3.22847 3.37493 3.52521 3.55808 3.80085 3.91123 4.02762 4.08118 4.10650 4.17296 4.32616 4.41762 4.56495 4.57849 4.61397 4.69672 4.83069 4.89268 4.95068 4.97226 5.02783 5.12430 5.15174 5.29371 5.37180 5.59055 5.84282 5.85589 6.28027 6.29294 6.39566 6.88379 7.16015 7.27046 7.91228 8.11793 9.27026 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.002403 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.904533 B =11649.089058 C =12531.745672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.187 3.813 3 H 0.048 0.952 4 N -0.744 5.744 5 C -0.219 4.219 6 H 0.054 0.946 7 C -0.069 4.069 8 N -0.988 5.988 9 Si 0.954 3.046 10 H -0.288 1.288 11 H -0.302 1.302 12 H -0.237 1.237 13 C -0.097 4.097 14 H 0.091 0.909 15 C -0.111 4.111 16 C 0.083 3.917 17 N -0.611 5.611 18 C 0.597 3.403 19 O -0.577 6.577 20 C -0.300 4.300 21 C -0.025 4.025 22 C -0.191 4.191 23 C 0.579 3.421 24 N -0.824 5.824 25 O -0.594 6.594 26 C -0.188 4.188 27 S 0.344 5.656 28 C 0.119 3.881 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.367 0.633 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.414 0.586 40 H 0.419 0.581 41 H 0.223 0.777 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.777 -8.359 25.780 30.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.079 3.921 3 H 0.066 0.934 4 N -0.387 5.387 5 C -0.350 4.350 6 H 0.072 0.928 7 C -0.260 4.260 8 N -0.639 5.639 9 Si 0.781 3.219 10 H -0.215 1.215 11 H -0.229 1.229 12 H -0.161 1.161 13 C -0.117 4.117 14 H 0.110 0.890 15 C -0.149 4.149 16 C -0.040 4.040 17 N -0.343 5.343 18 C 0.387 3.613 19 O -0.459 6.459 20 C -0.420 4.420 21 C -0.058 4.058 22 C -0.207 4.207 23 C 0.364 3.636 24 N -0.388 5.388 25 O -0.476 6.476 26 C -0.328 4.328 27 S 0.614 5.386 28 C -0.003 4.003 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.200 0.800 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.148 0.852 39 H 0.247 0.753 40 H 0.251 0.749 41 H 0.240 0.760 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.264 -7.949 24.869 29.285 hybrid contribution -0.559 -0.469 0.999 1.237 sum 12.705 -8.418 25.868 30.024 Atomic orbital electron populations 1.22363 0.97892 1.01448 1.00593 1.20234 0.92436 0.95100 0.84338 0.93388 1.42649 1.79858 1.09613 1.06627 1.18954 1.34545 0.94290 0.87259 0.92843 1.25506 1.02705 1.02599 0.95153 1.69895 1.54992 1.37797 1.01227 0.85428 0.77271 0.80529 0.78646 1.21465 1.22898 1.16068 1.22497 0.96562 1.00059 0.92566 0.89031 1.22548 0.94841 1.04557 0.92976 1.22466 0.87560 1.01130 0.92848 1.48388 1.18621 1.63153 1.04132 1.16919 0.85957 0.77831 0.80609 1.90819 1.30579 1.49510 1.74971 1.23967 1.02630 1.18012 0.97378 1.20228 0.98252 0.94739 0.92546 1.18837 0.95886 1.11752 0.94228 1.17829 0.82464 0.76103 0.87230 1.43441 1.16664 1.66035 1.12699 1.90842 1.43781 1.51301 1.61668 1.27011 1.04691 1.01192 0.99893 1.83255 1.01615 1.52333 1.01423 1.22186 0.92179 0.99291 0.86692 0.91618 0.94863 0.92791 0.79973 0.93624 0.90347 0.88697 0.88645 0.88587 0.85172 0.75325 0.74895 0.76007 0.90602 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.27 71.98 0.67 -4.52 16 2 C 0.19 6.17 2.41 44.99 0.11 6.27 16 3 H 0.05 1.70 8.03 -2.39 -0.02 1.68 16 4 N -0.74 -30.72 4.60 -322.94 -1.49 -32.20 16 5 C -0.22 -11.66 10.41 84.03 0.87 -10.78 16 6 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 7 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 8 N -0.99 -61.59 13.97 21.65 0.30 -61.29 16 9 Si 0.95 42.51 27.74 68.60 1.90 44.42 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.24 -8.87 6.52 99.48 0.65 -8.22 16 13 C -0.10 -2.40 2.61 -9.48 -0.02 -2.43 16 14 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 15 C -0.11 -2.35 6.12 31.78 0.19 -2.15 16 16 C 0.08 1.36 5.17 86.73 0.45 1.81 16 17 N -0.61 -14.14 3.33 -816.86 -2.72 -16.86 16 18 C 0.60 16.37 7.82 86.46 0.68 17.04 16 19 O -0.58 -20.86 17.05 -4.31 -0.07 -20.93 16 20 C -0.30 -6.29 6.31 23.72 0.15 -6.14 16 21 C -0.03 -0.58 9.47 21.66 0.21 -0.37 16 22 C -0.19 -3.06 5.82 -21.09 -0.12 -3.19 16 23 C 0.58 10.33 8.06 86.64 0.70 11.03 16 24 N -0.82 -5.28 8.84 -175.94 -1.56 -6.84 16 25 O -0.59 -17.12 17.53 -4.10 -0.07 -17.19 16 26 C -0.19 -1.31 10.41 67.45 0.70 -0.61 16 27 S 0.34 3.23 18.32 -56.49 -1.04 2.19 16 28 C 0.12 2.94 5.67 86.78 0.49 3.44 16 29 H 0.06 1.77 7.70 -2.39 -0.02 1.75 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.37 14.26 5.66 -92.71 -0.52 13.74 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.08 1.84 8.04 -2.39 -0.02 1.83 16 35 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.10 1.20 6.96 -2.38 -0.02 1.19 16 37 H 0.10 1.16 6.79 -2.38 -0.02 1.15 16 38 H 0.13 3.75 7.95 -2.91 -0.02 3.72 16 39 H 0.41 1.89 8.93 -92.71 -0.83 1.07 16 40 H 0.42 -0.69 7.29 -92.71 -0.68 -1.37 16 41 H 0.22 -0.76 6.99 -2.91 -0.02 -0.78 16 42 H 0.08 1.99 8.04 -2.39 -0.02 1.97 16 43 H 0.07 1.85 7.99 -2.38 -0.02 1.83 16 Total: -1.00 -83.84 366.45 -0.21 -84.05 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -1.01 Total: 18.64 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.54 Total: 6.01 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -5.46 Total: -117.19 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.15 Total: -38.13 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.90 Total: 44.42 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.04 Total: 2.19 kcal Total: -83.84 -0.21 -84.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724561755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.299 kcal (2) G-P(sol) polarization free energy of solvation -83.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds