Wall clock time and date at job start Tue Mar 31 2020 20:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47201 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47080 * 120.00466 * 9 7 5 12 12 H 1.48506 * 109.47018 * 240.00565 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09005 * 110.88719 * 60.70330 * 13 2 1 15 15 C 1.55161 * 111.00639 * 296.82167 * 13 2 1 16 16 C 1.54320 * 102.94244 * 206.42577 * 15 13 2 17 17 N 1.47019 * 107.27253 * 22.18982 * 16 15 13 18 18 C 1.34784 * 125.64549 * 181.09541 * 17 16 15 19 19 O 1.21682 * 119.99663 * 179.97438 * 18 17 16 20 20 C 1.46731 * 120.00197 * 359.97438 * 18 17 16 21 21 C 1.34872 * 125.05339 * 179.97438 * 20 18 17 22 22 C 1.38935 * 113.65085 * 179.97438 * 21 20 18 23 23 C 1.47345 * 122.96081 * 180.02562 * 22 21 20 24 24 N 1.34770 * 119.99809 * 179.97438 * 23 22 21 25 25 O 1.21616 * 119.99768 * 0.02562 * 23 22 21 26 26 C 1.36658 * 114.08131 * 0.02562 * 22 21 20 27 27 S 1.70607 * 110.52745 * 359.72560 * 26 22 21 28 28 C 1.47460 * 108.72348 * 1.03013 * 17 16 15 29 29 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 30 30 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 32 32 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 33 33 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 34 34 H 1.09000 * 110.71909 * 324.78931 * 15 13 2 35 35 H 1.08995 * 110.71728 * 87.88234 * 15 13 2 36 36 H 1.09003 * 109.88595 * 141.61343 * 16 15 13 37 37 H 1.09008 * 109.88080 * 262.77332 * 16 15 13 38 38 H 1.07996 * 123.17665 * 0.02808 * 21 20 18 39 39 H 0.97006 * 120.00251 * 0.02562 * 24 23 22 40 40 H 0.97001 * 119.99717 * 179.97438 * 24 23 22 41 41 H 1.07997 * 124.74034 * 180.02562 * 26 22 21 42 42 H 1.09006 * 110.40751 * 217.08310 * 28 17 16 43 43 H 1.09000 * 110.35276 * 94.74144 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.9355 -1.9363 -3.4471 9 14 2.8079 0.2744 -5.1136 10 1 2.3922 1.6863 -4.9167 11 1 4.2268 0.2328 -5.5496 12 1 1.9522 -0.3537 -6.1521 13 6 2.0399 -0.7212 1.2493 14 1 1.6996 -1.7566 1.2665 15 6 1.6091 0.0272 2.5384 16 6 2.7008 -0.3744 3.5525 17 7 3.8814 -0.7902 2.7812 18 6 5.0429 -1.2343 3.3012 19 8 5.9570 -1.5529 2.5640 20 6 5.2050 -1.3335 4.7561 21 6 6.3186 -1.7632 5.3839 22 6 6.2135 -1.7609 6.7693 23 6 7.3085 -2.1900 7.6570 24 7 7.1417 -2.1630 8.9941 25 8 8.3629 -2.5677 7.1832 26 6 5.0052 -1.3256 7.2361 27 16 3.9799 -0.9033 5.9396 28 6 3.5842 -0.6426 1.3444 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2491 -1.6318 -1.1525 33 1 3.2623 -2.3926 -4.2382 34 1 1.6104 1.1052 2.3771 35 1 0.6274 -0.3104 2.8704 36 1 2.9518 0.4778 4.1841 37 1 2.3489 -1.2031 4.1672 38 1 7.2084 -2.0786 4.8593 39 1 6.3008 -1.8615 9.3721 40 1 7.8624 -2.4459 9.5785 41 1 4.7383 -1.2539 8.2801 42 1 4.0409 -1.4532 0.7766 43 1 3.9379 0.3224 0.9813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724561758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:09 Heat of formation + Delta-G solvation = -57.529155 kcal Electronic energy + Delta-G solvation = -26175.482065 eV Core-core repulsion = 22346.141977 eV Total energy + Delta-G solvation = -3829.340087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37557 -40.83408 -39.24216 -37.83083 -36.81882 -34.82495 -34.33716 -32.27455 -31.15801 -30.06510 -29.46702 -26.70906 -25.96356 -25.24780 -23.29365 -22.89161 -21.08534 -20.97402 -20.13807 -19.53375 -18.96898 -18.14978 -17.98610 -17.45351 -17.02219 -16.63305 -16.36248 -15.96599 -15.71975 -15.46222 -15.31864 -15.02274 -14.56820 -14.32591 -14.24201 -13.97757 -13.87197 -13.71392 -13.54161 -13.40530 -13.11054 -12.99707 -12.80207 -12.37029 -12.21379 -12.11631 -12.01519 -11.74230 -11.53557 -11.38816 -11.32984 -11.12861 -10.93534 -10.76345 -10.23452 -9.79536 -9.56498 -8.97309 -7.91965 -5.19046 -0.70559 0.29609 0.51362 0.70055 1.45800 1.47343 1.56377 1.74035 1.84993 2.31554 2.55861 2.57343 3.30661 3.43040 3.57594 3.69834 3.86615 3.92959 4.04861 4.10345 4.17893 4.20408 4.36807 4.53239 4.58565 4.61878 4.66353 4.84870 4.87259 4.92878 4.95349 4.96628 5.12910 5.14488 5.21133 5.33165 5.44410 5.55791 5.69703 5.84752 6.30703 6.33230 6.41035 6.90318 7.28243 7.36397 8.15358 8.34970 9.31990 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.002405 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.462009 B =11637.491054 C =12721.114708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.178 3.822 3 H 0.048 0.952 4 N -0.739 5.739 5 C -0.226 4.226 6 H 0.078 0.922 7 C -0.083 4.083 8 N -0.972 5.972 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.301 1.301 12 H -0.295 1.295 13 C -0.093 4.093 14 H 0.078 0.922 15 C -0.105 4.105 16 C 0.076 3.924 17 N -0.612 5.612 18 C 0.588 3.412 19 O -0.588 6.588 20 C -0.302 4.302 21 C -0.029 4.029 22 C -0.192 4.192 23 C 0.578 3.422 24 N -0.822 5.822 25 O -0.596 6.596 26 C -0.186 4.186 27 S 0.367 5.633 28 C 0.124 3.876 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.369 0.631 33 H 0.247 0.753 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.420 0.580 40 H 0.414 0.586 41 H 0.228 0.772 42 H 0.038 0.962 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 5.683 33.932 34.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.379 5.379 5 C -0.359 4.359 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.229 1.229 12 H -0.223 1.223 13 C -0.113 4.113 14 H 0.097 0.903 15 C -0.143 4.143 16 C -0.046 4.046 17 N -0.344 5.344 18 C 0.378 3.622 19 O -0.470 6.470 20 C -0.422 4.422 21 C -0.062 4.062 22 C -0.208 4.208 23 C 0.363 3.637 24 N -0.387 5.387 25 O -0.478 6.478 26 C -0.326 4.326 27 S 0.636 5.364 28 C 0.001 3.999 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.200 0.800 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.252 0.748 40 H 0.247 0.753 41 H 0.245 0.755 42 H 0.056 0.944 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.622 6.042 32.952 34.149 hybrid contribution 2.521 -1.063 -1.382 3.066 sum -4.100 4.979 31.569 32.221 Atomic orbital electron populations 1.22270 0.96586 1.01031 1.01317 1.20450 0.93438 0.94766 0.84382 0.93375 1.42696 1.78438 1.10195 1.06584 1.19640 1.33758 0.94131 0.88324 0.90363 1.25525 1.03534 0.96860 1.01508 1.69833 1.53049 1.10343 1.29174 0.85159 0.76427 0.78460 0.80302 1.18638 1.22899 1.22257 1.22524 0.91660 1.00915 0.96204 0.90345 1.22710 0.98816 1.01878 0.90874 1.22608 0.84875 1.01698 0.95430 1.48487 1.13569 1.63694 1.08633 1.17172 0.81295 0.76860 0.86896 1.90841 1.41848 1.52341 1.62014 1.23930 1.02911 1.18583 0.96766 1.20230 0.97588 0.94700 0.93702 1.18786 0.96835 1.12641 0.92557 1.17842 0.85845 0.76345 0.83658 1.43407 1.21598 1.68539 1.05123 1.90847 1.30082 1.50009 1.76901 1.27055 0.96784 0.99738 1.09023 1.82881 1.10250 1.54720 0.88581 1.22077 0.97252 1.00442 0.80110 0.94879 0.93965 0.89546 0.79951 0.94406 0.88509 0.85895 0.87967 0.88374 0.85973 0.74778 0.75324 0.75518 0.94359 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.31 71.98 0.67 -3.82 16 2 C 0.18 6.20 2.40 44.99 0.11 6.31 16 3 H 0.05 1.70 8.07 -2.39 -0.02 1.68 16 4 N -0.74 -36.15 4.90 -322.94 -1.58 -37.73 16 5 C -0.23 -12.42 9.93 84.03 0.83 -11.59 16 6 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 7 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 8 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 9 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 10 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 13 C -0.09 -2.61 2.64 -9.40 -0.02 -2.63 16 14 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 15 C -0.10 -1.62 5.44 31.78 0.17 -1.45 16 16 C 0.08 1.18 5.16 86.73 0.45 1.63 16 17 N -0.61 -17.39 3.33 -816.32 -2.72 -20.10 16 18 C 0.59 19.84 7.82 86.46 0.68 20.52 16 19 O -0.59 -26.83 17.05 -4.29 -0.07 -26.91 16 20 C -0.30 -7.36 6.31 23.72 0.15 -7.21 16 21 C -0.03 -0.78 9.47 21.66 0.21 -0.58 16 22 C -0.19 -3.44 5.82 -21.08 -0.12 -3.56 16 23 C 0.58 11.36 8.06 86.64 0.70 12.06 16 24 N -0.82 -6.00 8.84 -175.95 -1.56 -7.56 16 25 O -0.60 -18.72 17.52 -4.08 -0.07 -18.79 16 26 C -0.19 -1.35 10.41 67.45 0.70 -0.64 16 27 S 0.37 3.40 18.33 -56.49 -1.04 2.36 16 28 C 0.12 4.33 6.16 86.85 0.54 4.86 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.73 7.38 -2.39 -0.02 1.71 16 32 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 33 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.10 1.31 8.04 -2.39 -0.02 1.29 16 35 H 0.12 1.12 8.11 -2.39 -0.02 1.10 16 36 H 0.10 1.03 6.95 -2.39 -0.02 1.01 16 37 H 0.10 1.05 6.82 -2.38 -0.02 1.04 16 38 H 0.12 4.14 7.95 -2.91 -0.02 4.12 16 39 H 0.42 -0.60 7.29 -92.70 -0.68 -1.27 16 40 H 0.41 2.28 8.93 -92.71 -0.83 1.45 16 41 H 0.23 -0.93 6.99 -2.91 -0.02 -0.95 16 42 H 0.04 1.69 8.04 -2.38 -0.02 1.67 16 43 H 0.06 2.20 8.03 -2.39 -0.02 2.18 16 Total: -1.00 -92.37 369.27 -0.35 -92.72 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -1.15 Total: 18.29 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.52 Total: 9.54 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.57 Total: -126.54 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.14 Total: -45.70 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.04 Total: 2.36 kcal Total: -92.37 -0.35 -92.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724561758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.189 kcal (2) G-P(sol) polarization free energy of solvation -92.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds