Wall clock time and date at job start Tue Mar 31 2020 20:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47594 * 2 1 4 4 N 1.46506 * 109.47166 * 120.00223 * 2 1 3 5 5 C 1.36930 * 119.99810 * 275.00074 * 4 2 1 6 6 H 1.08004 * 120.00268 * 359.97438 * 5 4 2 7 7 C 1.38817 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99442 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00107 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47226 * 90.00074 * 9 7 5 11 11 H 1.48507 * 109.46983 * 209.99691 * 9 7 5 12 12 H 1.48500 * 109.47567 * 329.99766 * 9 7 5 13 13 C 1.53003 * 109.46940 * 239.99756 * 2 1 3 14 14 H 1.08996 * 110.88687 * 300.10514 * 13 2 1 15 15 C 1.55157 * 111.00601 * 176.18558 * 13 2 1 16 16 C 1.54320 * 102.94345 * 206.42528 * 15 13 2 17 17 N 1.47020 * 107.27215 * 22.19283 * 16 15 13 18 18 C 1.34781 * 125.65035 * 181.02701 * 17 16 15 19 19 O 1.21623 * 120.00152 * 180.02562 * 18 17 16 20 20 C 1.47171 * 119.99598 * 0.03613 * 18 17 16 21 21 C 1.36613 * 125.16070 * 180.02562 * 20 18 17 22 22 C 1.36791 * 114.74720 * 179.97438 * 21 20 18 23 23 C 1.36607 * 114.74725 * 359.97438 * 22 21 20 24 24 C 1.47172 * 125.16475 * 180.02562 * 23 22 21 25 25 N 1.34773 * 119.99917 * 180.02562 * 24 23 22 26 26 O 1.21618 * 119.99948 * 359.97438 * 24 23 22 27 27 S 1.75829 * 125.16395 * 359.69634 * 20 18 17 28 28 C 1.47426 * 108.70300 * 1.05608 * 17 16 15 29 29 H 1.09000 * 109.47138 * 294.92003 * 1 2 3 30 30 H 1.08994 * 109.47679 * 174.91711 * 1 2 3 31 31 H 1.09008 * 109.46951 * 54.91523 * 1 2 3 32 32 H 0.97001 * 119.99837 * 94.99455 * 4 2 1 33 33 H 0.97004 * 119.99497 * 179.97438 * 8 7 5 34 34 H 1.09008 * 110.72000 * 324.78883 * 15 13 2 35 35 H 1.09003 * 110.72348 * 88.05917 * 15 13 2 36 36 H 1.09000 * 109.88460 * 262.77206 * 16 15 13 37 37 H 1.09004 * 110.01140 * 141.67824 * 16 15 13 38 38 H 1.08008 * 122.62161 * 359.97438 * 21 20 18 39 39 H 1.07999 * 122.62838 * 179.97438 * 22 21 20 40 40 H 0.97005 * 120.00218 * 359.97438 * 25 24 23 41 41 H 0.97000 * 120.00239 * 179.97438 * 25 24 23 42 42 H 1.08999 * 110.37036 * 217.03550 * 28 17 16 43 43 H 1.09007 * 110.45494 * 94.75835 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6621 3.5093 8 7 2.9234 -1.9393 3.4504 9 14 2.7903 0.2700 5.1182 10 1 1.5225 0.1798 5.8862 11 1 3.8945 -0.3240 5.9141 12 1 3.0963 1.6949 4.8334 13 6 2.0399 -0.7213 -1.2492 14 1 1.6879 -1.7526 -1.2734 15 6 3.5879 -0.6592 -1.3344 16 6 3.8557 -0.7753 -2.8497 17 7 2.6289 -0.3561 -3.5432 18 6 2.4501 -0.3340 -4.8789 19 8 1.3882 0.0335 -5.3442 20 6 3.5396 -0.7550 -5.7742 21 6 3.4738 -0.7740 -7.1386 22 6 4.6135 -1.2038 -7.7610 23 6 5.6325 -1.5437 -6.9170 24 6 6.9551 -2.0325 -7.3387 25 7 7.8865 -2.3389 -6.4141 26 8 7.2072 -2.1607 -8.5216 27 16 5.1265 -1.3019 -5.2504 28 6 1.6270 0.0367 -2.5355 29 1 -0.3633 0.4330 0.9320 30 1 -0.3634 -1.0235 -0.0910 31 1 -0.3633 0.5907 -0.8410 32 1 2.2489 -1.6319 1.1526 33 1 3.2467 -2.3966 4.2424 34 1 3.9575 0.2912 -0.9491 35 1 4.0376 -1.4949 -0.7981 36 1 4.0922 -1.8079 -3.1064 37 1 4.6827 -0.1243 -3.1334 38 1 2.5909 -0.4731 -7.6832 39 1 4.7010 -1.2694 -8.8354 40 1 7.6854 -2.2370 -5.4707 41 1 8.7581 -2.6614 -6.6920 42 1 0.6300 -0.2691 -2.8525 43 1 1.6575 1.1133 -2.3677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733532734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:14 Heat of formation + Delta-G solvation = -27.513467 kcal Electronic energy + Delta-G solvation = -26135.315571 eV Core-core repulsion = 22307.277061 eV Total energy + Delta-G solvation = -3828.038510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30950 -39.92151 -38.26094 -37.10311 -35.35097 -34.20911 -32.61220 -30.96700 -30.27317 -29.28577 -27.66002 -26.22189 -24.45581 -23.23234 -22.18205 -21.70603 -20.87544 -19.75974 -19.46991 -18.38610 -17.41025 -17.32182 -17.03681 -16.40156 -15.94323 -15.67609 -15.31409 -15.06009 -14.61692 -14.26783 -13.99916 -13.66705 -13.57851 -13.35179 -13.01455 -12.89655 -12.83591 -12.57834 -12.47226 -12.25366 -11.95464 -11.45043 -11.21691 -10.95465 -10.82802 -10.75137 -10.68394 -10.44808 -10.28941 -10.26518 -10.25306 -9.94436 -9.70827 -9.32654 -9.11437 -8.98213 -8.74638 -7.03880 -5.83715 -3.12322 -0.29729 0.90120 1.28050 1.69629 2.67660 2.68303 2.92579 2.95367 3.38506 3.44433 3.45414 4.12792 4.40657 4.50755 4.57747 4.76408 4.79029 4.91519 4.95851 5.12579 5.26403 5.45131 5.50456 5.52860 5.61474 5.76660 5.78540 5.84219 5.85584 5.92689 6.06072 6.11024 6.23492 6.24679 6.34437 6.47010 6.56230 6.73888 6.79183 7.02708 7.23761 7.64124 7.68503 7.83832 8.34755 9.46505 10.02613 10.37643 11.38817 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.002478 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.301843 B =11295.731296 C =12647.026816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.103 4.103 14 H 0.083 0.917 15 C -0.109 4.109 16 C 0.081 3.919 17 N -0.609 5.609 18 C 0.597 3.403 19 O -0.526 6.526 20 C -0.217 4.217 21 C -0.075 4.075 22 C -0.064 4.064 23 C -0.263 4.263 24 C 0.596 3.404 25 N -0.848 5.848 26 O -0.529 6.529 27 S 0.210 5.790 28 C 0.115 3.885 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.401 0.599 41 H 0.410 0.590 42 H 0.081 0.919 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 0.241 -19.018 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.102 0.898 15 C -0.147 4.147 16 C -0.043 4.043 17 N -0.342 5.342 18 C 0.385 3.615 19 O -0.404 6.404 20 C -0.338 4.338 21 C -0.108 4.108 22 C -0.097 4.097 23 C -0.384 4.384 24 C 0.381 3.619 25 N -0.412 5.412 26 O -0.407 6.407 27 S 0.479 5.521 28 C -0.007 4.007 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.230 0.770 41 H 0.242 0.758 42 H 0.100 0.900 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.186 0.336 -18.555 19.901 hybrid contribution -0.179 0.164 0.009 0.243 sum 7.008 0.501 -18.546 19.833 Atomic orbital electron populations 1.22502 0.99140 1.00708 1.00548 1.20127 0.91883 0.95164 0.85301 0.93163 1.42361 1.78186 1.10658 1.05100 1.19205 1.36493 0.93855 0.87260 0.91211 1.24714 1.02186 0.95950 0.97984 1.69652 1.50944 1.08629 1.28880 0.86228 0.77315 0.78811 0.84046 1.21772 1.21825 1.20791 1.22711 0.94978 1.00458 0.94113 0.89830 1.22551 0.96618 1.04645 0.90906 1.22364 0.86832 0.99910 0.95218 1.48418 1.16464 1.64754 1.04560 1.16642 0.86079 0.78474 0.80334 1.90835 1.26262 1.48269 1.75030 1.24904 0.98561 1.12178 0.98185 1.20571 0.99712 0.98700 0.91851 1.20555 0.90598 0.96747 1.01799 1.25152 0.99664 1.13897 0.99655 1.17065 0.82785 0.76522 0.85560 1.43687 1.17532 1.70198 1.09814 1.90865 1.79848 1.53254 1.16704 1.84370 1.05427 1.59522 1.02736 1.22395 0.92069 0.99688 0.86506 0.92466 0.93523 0.94343 0.78287 0.93526 0.89755 0.88977 0.90876 0.90896 0.82178 0.82526 0.77033 0.75763 0.90010 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.23 37.16 0.34 -2.46 16 2 C 0.19 3.23 2.40 -67.93 -0.16 3.07 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -16.22 4.88 -53.42 -0.26 -16.48 16 5 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 6 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -26.61 13.06 55.49 0.72 -25.88 16 9 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C -0.10 -1.44 2.63 -88.47 -0.23 -1.68 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.11 -1.38 6.19 -24.90 -0.15 -1.54 16 16 C 0.08 0.84 5.17 -3.07 -0.02 0.83 16 17 N -0.61 -7.59 3.33 -171.88 -0.57 -8.17 16 18 C 0.60 8.05 7.84 -12.63 -0.10 7.95 16 19 O -0.53 -8.67 17.07 5.26 0.09 -8.58 16 20 C -0.22 -2.35 6.39 -36.54 -0.23 -2.59 16 21 C -0.08 -0.74 9.88 -40.69 -0.40 -1.14 16 22 C -0.06 -0.59 9.88 -40.69 -0.40 -0.99 16 23 C -0.26 -2.40 6.46 -36.54 -0.24 -2.64 16 24 C 0.60 5.70 8.07 -12.63 -0.10 5.60 16 25 N -0.85 -4.87 8.87 30.37 0.27 -4.60 16 26 O -0.53 -6.94 17.65 5.26 0.09 -6.85 16 27 S 0.21 1.68 17.65 -107.50 -1.90 -0.22 16 28 C 0.12 1.51 5.52 -2.53 -0.01 1.49 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.54 7.60 -51.92 -0.39 0.14 16 32 H 0.38 9.21 7.80 -40.82 -0.32 8.89 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.12 8.04 -51.92 -0.42 0.71 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.67 6.83 -51.93 -0.35 0.32 16 37 H 0.07 0.65 6.95 -51.93 -0.36 0.29 16 38 H 0.16 1.44 8.04 -52.48 -0.42 1.02 16 39 H 0.16 1.28 8.04 -52.49 -0.42 0.86 16 40 H 0.40 1.51 7.93 -40.82 -0.32 1.19 16 41 H 0.41 1.72 8.93 -40.82 -0.36 1.36 16 42 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 43 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -32.80 371.49 -8.80 -41.60 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.87 Total: 7.95 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.96 Total: -0.76 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.16 Total: -55.13 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.18 Total: -15.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.90 Total: -0.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.80 -8.80 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733532734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.090 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds