Wall clock time and date at job start Tue Mar 31 2020 20:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.36939 * 120.00073 * 84.72333 * 4 2 1 6 6 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00056 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00155 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46896 * 90.00225 * 9 7 5 11 11 H 1.48501 * 109.47275 * 210.00265 * 9 7 5 12 12 H 1.48499 * 109.47039 * 330.00065 * 9 7 5 13 13 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 14 14 H 1.09001 * 110.88778 * 60.70258 * 13 2 1 15 15 C 1.55160 * 111.00302 * 296.81933 * 13 2 1 16 16 C 1.54325 * 102.94132 * 206.42591 * 15 13 2 17 17 N 1.47021 * 107.27144 * 22.18984 * 16 15 13 18 18 C 1.34777 * 125.64722 * 181.09744 * 17 16 15 19 19 O 1.21624 * 120.00188 * 179.97438 * 18 17 16 20 20 C 1.47171 * 120.00143 * 359.97438 * 18 17 16 21 21 C 1.36611 * 125.16165 * 179.97438 * 20 18 17 22 22 C 1.36805 * 114.74376 * 179.97438 * 21 20 18 23 23 C 1.36609 * 114.74374 * 0.02562 * 22 21 20 24 24 C 1.47168 * 125.16132 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00414 * 179.97438 * 24 23 22 26 26 O 1.21627 * 120.00087 * 359.97438 * 24 23 22 27 27 S 1.75837 * 109.68024 * 359.76552 * 23 22 21 28 28 C 1.47463 * 108.72631 * 1.02757 * 17 16 15 29 29 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 30 30 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 32 32 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 33 33 H 0.97000 * 119.99835 * 179.97438 * 8 7 5 34 34 H 1.09003 * 110.71766 * 324.78442 * 15 13 2 35 35 H 1.08998 * 110.72162 * 87.88500 * 15 13 2 36 36 H 1.08995 * 109.88537 * 141.60868 * 16 15 13 37 37 H 1.09000 * 109.87865 * 262.61903 * 16 15 13 38 38 H 1.07998 * 122.63227 * 359.97438 * 21 20 18 39 39 H 1.08000 * 122.62256 * 179.97438 * 22 21 20 40 40 H 0.97006 * 119.99631 * 359.97438 * 25 24 23 41 41 H 0.96997 * 120.00156 * 179.97438 * 25 24 23 42 42 H 1.08996 * 110.41202 * 217.08432 * 28 17 16 43 43 H 1.09002 * 110.35134 * 94.73909 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1437 -0.0087 -2.3772 6 1 1.8830 1.0382 -2.4266 7 6 2.6059 -0.6632 -3.5107 8 7 2.7260 -0.0080 -4.6460 9 14 3.0575 -2.4737 -3.4250 10 1 1.8626 -3.2973 -3.7399 11 1 4.1315 -2.7632 -4.4089 12 1 3.5375 -2.8000 -2.0581 13 6 2.0400 -0.7213 1.2492 14 1 1.6997 -1.7567 1.2662 15 6 1.6092 0.0270 2.5383 16 6 2.7009 -0.3748 3.5524 17 7 3.8815 -0.7905 2.7810 18 6 5.0429 -1.2346 3.3008 19 8 5.9567 -1.5530 2.5639 20 6 5.2056 -1.3343 4.7600 21 6 6.3325 -1.7694 5.3981 22 6 6.2511 -1.7754 6.7637 23 6 5.0560 -1.3460 7.2672 24 6 4.7207 -1.2602 8.6976 25 7 3.5057 -0.8196 9.0797 26 8 5.5400 -1.5871 9.5350 27 16 3.9813 -0.9055 5.9471 28 6 3.5842 -0.6428 1.3442 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.0494 -0.4652 -5.4379 34 1 1.6106 1.1051 2.3771 35 1 0.6275 -0.3106 2.8704 36 1 2.9520 0.4774 4.1839 37 1 2.3480 -1.2016 4.1688 38 1 7.2183 -2.0839 4.8662 39 1 7.0675 -2.0955 7.3942 40 1 2.8523 -0.5586 8.4119 41 1 3.2846 -0.7635 10.0225 42 1 4.0408 -1.4533 0.7762 43 1 3.9379 0.3222 0.9811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733532740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:20 Heat of formation + Delta-G solvation = -22.281960 kcal Electronic energy + Delta-G solvation = -26284.897127 eV Core-core repulsion = 22457.085472 eV Total energy + Delta-G solvation = -3827.811654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32608 -39.97608 -38.33929 -37.14335 -35.49280 -34.27493 -32.64584 -31.10394 -30.41021 -29.09965 -28.53238 -26.19966 -23.94096 -23.58384 -22.22317 -21.63850 -20.82402 -19.97356 -19.52430 -18.46969 -17.60199 -17.46235 -17.17786 -16.36985 -15.96922 -15.66758 -15.36458 -15.09917 -14.72882 -14.38459 -14.19098 -13.88752 -13.55138 -13.29058 -13.13889 -12.83924 -12.78435 -12.64718 -12.48392 -12.30981 -12.08200 -11.81970 -11.35457 -11.09072 -10.96305 -10.80863 -10.69026 -10.64173 -10.34107 -10.32081 -10.20110 -10.01122 -9.60984 -9.34867 -9.14877 -8.97647 -8.74899 -7.31961 -5.79382 -3.15759 -0.33170 0.85099 1.22442 1.67362 2.64408 2.67328 2.88935 2.93013 3.37238 3.40247 3.46011 4.08647 4.34940 4.37445 4.57403 4.60416 4.71808 4.75998 4.93190 5.01095 5.14242 5.34015 5.47646 5.49203 5.53301 5.60525 5.65590 5.69983 5.81166 5.82523 5.97127 6.02760 6.11142 6.16815 6.20040 6.29125 6.37966 6.67112 6.69404 6.91147 7.24865 7.62543 7.86987 7.95126 8.39258 9.17002 9.89738 10.08189 11.38756 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.002582 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.714911 B =10840.996482 C =11776.842975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.749 5.749 5 C -0.244 4.244 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.276 1.276 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.117 4.117 16 C 0.084 3.916 17 N -0.612 5.612 18 C 0.595 3.405 19 O -0.517 6.517 20 C -0.212 4.212 21 C -0.076 4.076 22 C -0.061 4.061 23 C -0.263 4.263 24 C 0.597 3.403 25 N -0.849 5.849 26 O -0.528 6.528 27 S 0.200 5.800 28 C 0.119 3.881 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.361 0.639 33 H 0.260 0.740 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.400 0.600 41 H 0.410 0.590 42 H 0.084 0.916 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -0.521 27.851 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.392 5.392 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.580 5.580 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C -0.127 4.127 14 H 0.101 0.899 15 C -0.155 4.155 16 C -0.041 4.041 17 N -0.345 5.345 18 C 0.382 3.618 19 O -0.395 6.395 20 C -0.333 4.333 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.384 4.384 24 C 0.381 3.619 25 N -0.413 5.413 26 O -0.405 6.405 27 S 0.469 5.531 28 C -0.002 4.002 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.229 0.771 41 H 0.242 0.758 42 H 0.103 0.897 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.723 -0.208 27.618 27.753 hybrid contribution 1.263 -1.717 0.072 2.133 sum -1.460 -1.925 27.690 27.795 Atomic orbital electron populations 1.22417 0.98456 1.00981 1.00630 1.20123 0.92171 0.95459 0.84209 0.92313 1.42793 1.79784 1.09555 1.07030 1.19016 1.37242 0.95663 0.85401 0.89177 1.24659 1.01269 0.97443 0.95570 1.69697 1.52500 1.35641 1.00191 0.86590 0.78116 0.86843 0.77208 1.21180 1.21745 1.20232 1.22754 0.93734 1.00729 0.95455 0.89913 1.22637 0.97230 1.01780 0.93883 1.22231 0.86750 0.99774 0.95297 1.48446 1.12678 1.64085 1.09326 1.16655 0.81851 0.78057 0.85279 1.90876 1.39495 1.49353 1.59743 1.24935 0.99479 1.11791 0.97130 1.20610 0.98577 0.98441 0.93226 1.20579 0.96962 0.97413 0.94483 1.25097 1.01339 1.14274 0.97649 1.17067 0.82033 0.76447 0.86369 1.43674 1.15573 1.69549 1.12500 1.90874 1.48529 1.48772 1.52372 1.84164 1.14851 1.60575 0.93478 1.22388 0.95669 1.03505 0.78681 0.92176 0.93565 0.94018 0.80653 0.93036 0.89685 0.89463 0.90812 0.90902 0.82077 0.82467 0.77134 0.75785 0.89726 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.30 37.16 0.35 -2.12 16 2 C 0.19 3.15 2.40 -67.93 -0.16 2.99 16 3 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 4 N -0.75 -16.37 4.70 -53.42 -0.25 -16.62 16 5 C -0.24 -6.54 10.41 -15.06 -0.16 -6.69 16 6 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -28.86 13.97 55.49 0.78 -28.08 16 9 Si 0.88 21.93 27.73 -169.99 -4.71 17.22 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 13 C -0.11 -1.39 2.64 -88.47 -0.23 -1.63 16 14 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.04 5.44 -24.89 -0.14 -1.18 16 16 C 0.08 0.73 5.17 -3.06 -0.02 0.72 16 17 N -0.61 -7.81 3.33 -171.85 -0.57 -8.38 16 18 C 0.59 8.46 7.83 -12.63 -0.10 8.36 16 19 O -0.52 -9.40 17.07 5.26 0.09 -9.31 16 20 C -0.21 -2.31 6.39 -36.54 -0.23 -2.54 16 21 C -0.08 -0.76 9.88 -40.69 -0.40 -1.16 16 22 C -0.06 -0.56 9.88 -40.69 -0.40 -0.96 16 23 C -0.26 -2.27 6.46 -36.55 -0.24 -2.51 16 24 C 0.60 5.32 8.07 -12.64 -0.10 5.22 16 25 N -0.85 -4.05 8.87 30.37 0.27 -3.78 16 26 O -0.53 -6.67 17.65 5.25 0.09 -6.58 16 27 S 0.20 1.44 17.66 -107.50 -1.90 -0.46 16 28 C 0.12 1.77 6.16 -2.50 -0.02 1.76 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.48 7.38 -51.93 -0.38 0.10 16 32 H 0.36 7.92 5.66 -40.82 -0.23 7.69 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 35 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 36 H 0.07 0.52 6.97 -51.93 -0.36 0.16 16 37 H 0.07 0.53 6.82 -51.93 -0.35 0.17 16 38 H 0.16 1.54 8.04 -52.49 -0.42 1.12 16 39 H 0.16 1.28 8.04 -52.49 -0.42 0.86 16 40 H 0.40 1.02 7.93 -40.82 -0.32 0.69 16 41 H 0.41 1.33 8.93 -40.82 -0.36 0.96 16 42 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 43 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -35.65 368.12 -8.42 -44.07 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.81 Total: 6.05 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.94 Total: 0.34 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.22 Total: -56.87 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.18 Total: -15.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.90 Total: -0.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.65 -8.42 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733532740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.787 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds