Wall clock time and date at job start Tue Mar 31 2020 20:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.87243 * 2 1 4 4 C 1.54324 * 109.87944 * 238.82769 * 2 1 3 5 5 H 1.09008 * 110.71888 * 144.40944 * 4 2 1 6 6 N 1.46904 * 110.72240 * 21.31876 * 4 2 1 7 7 C 1.46895 * 111.00218 * 169.76239 * 6 4 2 8 8 C 1.50701 * 109.47053 * 179.97438 * 7 6 4 9 9 O 1.21294 * 120.00064 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00082 * 180.02562 * 8 7 6 11 11 C 1.37092 * 120.00311 * 180.02562 * 10 8 7 12 12 H 1.08008 * 120.00047 * 359.97438 * 11 10 8 13 13 C 1.38952 * 120.00247 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99835 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47333 * 59.99680 * 15 13 11 17 17 H 1.48496 * 109.46966 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47049 * 299.99810 * 15 13 11 19 19 C 1.55156 * 102.94657 * 262.77510 * 4 2 1 20 20 C 1.55133 * 101.48124 * 324.33342 * 19 4 2 21 21 N 1.47025 * 109.88611 * 121.02345 * 2 1 3 22 22 C 1.34773 * 125.64378 * 300.43790 * 21 2 1 23 23 O 1.21635 * 120.00466 * 7.47874 * 22 21 2 24 24 C 1.47188 * 119.99810 * 187.47812 * 22 21 2 25 25 C 1.44425 * 123.46344 * 7.93372 * 24 22 21 26 26 C 1.32766 * 113.08740 * 180.30477 * 25 24 22 27 27 S 1.75503 * 110.57495 * 359.74240 * 26 25 24 28 28 C 1.36011 * 123.46531 * 187.74674 * 24 22 21 29 29 H 1.09009 * 109.46861 * 292.72632 * 1 2 3 30 30 H 1.08996 * 109.47316 * 52.72754 * 1 2 3 31 31 H 1.09001 * 109.46915 * 172.73136 * 1 2 3 32 32 H 1.00900 * 110.99792 * 45.80434 * 6 4 2 33 33 H 1.08997 * 109.47525 * 299.99642 * 7 6 4 34 34 H 1.09004 * 109.46812 * 59.99726 * 7 6 4 35 35 H 0.97003 * 119.99581 * 359.97438 * 10 8 7 36 36 H 0.97002 * 120.00308 * 179.97438 * 14 13 11 37 37 H 1.08999 * 111.00664 * 82.57050 * 19 4 2 38 38 H 1.08998 * 111.00535 * 206.42749 * 19 4 2 39 39 H 1.09002 * 110.49387 * 278.45147 * 20 19 4 40 40 H 1.08999 * 110.33986 * 156.06075 * 20 19 4 41 41 H 1.08001 * 123.45885 * 0.06109 * 25 24 22 42 42 H 1.08000 * 124.71628 * 179.74009 * 26 25 24 43 43 H 1.07998 * 124.58626 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7512 -1.2417 5 1 2.9656 -0.2853 -1.6180 6 7 1.0278 -0.8021 -2.2910 7 6 1.5906 -1.2951 -3.5551 8 6 0.5100 -1.3340 -4.6048 9 8 -0.6181 -0.9857 -4.3270 10 7 0.7969 -1.7568 -5.8520 11 6 -0.1860 -1.7916 -6.8070 12 1 -1.1904 -1.4807 -6.5599 13 6 0.1100 -2.2270 -8.0930 14 7 1.3321 -2.6048 -8.3938 15 14 -1.2292 -2.2737 -9.3945 16 1 -1.7729 -0.9065 -9.5948 17 1 -0.6605 -2.7730 -10.6721 18 1 -2.3191 -3.1797 -8.9509 19 6 2.3518 -2.1705 -0.6896 20 6 2.8613 -1.8456 0.7392 21 7 2.0301 -0.7126 1.1848 22 6 1.7755 -0.3813 2.4661 23 8 0.9708 0.4950 2.7194 24 6 2.4712 -1.0798 3.5590 25 6 3.5552 -2.0102 3.3468 26 6 4.0278 -2.5252 4.4756 27 16 3.1608 -1.8800 5.8584 28 6 2.1617 -0.9127 4.8729 29 1 -0.3633 0.3971 0.9480 30 1 -0.3634 0.6223 -0.8177 31 1 -0.3633 -1.0194 -0.1300 32 1 0.5935 0.1000 -2.4159 33 1 2.3902 -0.6299 -3.8808 34 1 1.9901 -2.2986 -3.4080 35 1 1.6991 -2.0356 -6.0740 36 1 1.5386 -2.9090 -9.2914 37 1 1.4451 -2.7746 -0.6568 38 1 3.1269 -2.6635 -1.2762 39 1 3.9124 -1.5579 0.7133 40 1 2.7179 -2.7030 1.3966 41 1 3.9393 -2.2641 2.3698 42 1 4.8337 -3.2417 4.5347 43 1 1.3850 -0.2591 5.2415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734388126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:06 Heat of formation + Delta-G solvation = -37.816833 kcal Electronic energy + Delta-G solvation = -26251.284689 eV Core-core repulsion = 22422.799392 eV Total energy + Delta-G solvation = -3828.485297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60036 -40.16274 -39.10714 -37.77658 -36.19547 -35.54695 -33.26222 -32.36262 -31.70709 -30.67145 -28.28434 -26.76931 -26.23087 -25.08579 -24.12562 -21.64452 -21.02454 -20.82827 -20.06932 -19.88950 -18.87038 -17.83548 -17.41074 -17.11935 -16.88703 -16.73016 -16.33985 -16.05723 -15.63549 -15.50282 -15.09923 -14.59715 -14.45408 -14.32489 -13.97077 -13.84424 -13.76796 -13.61703 -13.41456 -13.29219 -13.25316 -13.10832 -12.88411 -12.71051 -12.42011 -12.32914 -12.12366 -11.87697 -11.66709 -11.60591 -11.48711 -10.95588 -10.32311 -10.04667 -9.99621 -9.72376 -9.37585 -9.31756 -8.45360 -5.93512 -0.19819 0.61077 0.96385 1.01898 1.40332 1.42383 1.52816 1.92459 2.08270 2.26989 2.30716 2.93209 3.22222 3.33134 3.53180 3.62393 3.76249 3.92950 4.05763 4.24106 4.26593 4.32737 4.38618 4.45960 4.50783 4.53872 4.61505 4.63186 4.68836 4.70915 4.87740 5.03904 5.05172 5.11945 5.24058 5.28360 5.35140 5.42282 5.44253 5.90247 6.11913 6.33719 6.46345 6.62440 7.06769 7.14696 7.58921 8.14844 8.71635 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033770 B = 0.001916 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.949504 B =14613.145815 C =15139.888770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.141 3.859 3 H 0.072 0.928 4 C 0.081 3.919 5 H 0.079 0.921 6 N -0.669 5.669 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.918 5.918 15 Si 0.990 3.010 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.122 4.122 20 C 0.091 3.909 21 N -0.604 5.604 22 C 0.585 3.415 23 O -0.585 6.585 24 C -0.181 4.181 25 C -0.136 4.136 26 C -0.226 4.226 27 S 0.228 5.772 28 C -0.203 4.203 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.345 0.655 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.184 0.816 42 H 0.201 0.799 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.930 -2.337 25.563 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.029 4.029 5 H 0.096 0.904 6 N -0.302 5.302 7 C -0.065 4.065 8 C 0.224 3.776 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.199 1.199 17 H -0.194 1.194 18 H -0.199 1.199 19 C -0.161 4.161 20 C -0.030 4.030 21 N -0.337 5.337 22 C 0.375 3.625 23 O -0.467 6.467 24 C -0.200 4.200 25 C -0.163 4.163 26 C -0.361 4.361 27 S 0.494 5.506 28 C -0.342 4.342 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.201 0.799 42 H 0.218 0.782 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.730 -2.559 27.507 30.418 hybrid contribution -0.392 1.192 -2.839 3.104 sum 12.338 -1.368 24.667 27.615 Atomic orbital electron populations 1.21828 0.95119 1.02151 1.01032 1.21519 0.94750 0.95527 0.84462 0.90989 1.22599 0.93301 0.97242 0.89741 0.90355 1.60223 1.30421 1.34060 1.05542 1.21545 0.93726 1.03113 0.88069 1.20946 0.90432 0.82325 0.83853 1.90507 1.24968 1.54422 1.81251 1.41906 1.12183 1.58130 1.08793 1.19599 0.92678 1.43155 0.90898 0.90529 1.25993 0.99483 0.96111 0.99623 1.69651 1.19826 1.44004 1.22454 0.85025 0.77760 0.78693 0.77085 1.19851 1.19436 1.19873 1.22983 1.02654 0.95599 0.94839 1.23097 0.95545 0.88883 0.95511 1.48315 1.50298 1.31060 1.04015 1.17742 0.80972 0.82084 0.81682 1.90746 1.36898 1.35043 1.84003 1.20267 1.02371 1.04700 0.92622 1.22088 0.95674 0.96583 1.01984 1.25997 1.07129 1.07854 0.95131 1.82969 1.25155 1.34052 1.08462 1.25765 1.05637 1.05171 0.97585 0.93375 0.91997 0.92886 0.83455 0.91186 0.87160 0.76859 0.91308 0.91127 0.87150 0.87780 0.87949 0.79908 0.78160 0.81780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 8.32 71.98 0.60 -3.65 16 2 C 0.14 3.43 3.46 45.34 0.16 3.59 16 3 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.08 1.72 3.07 46.10 0.14 1.86 16 5 H 0.08 1.37 8.06 -2.38 -0.02 1.35 16 6 N -0.67 -19.70 4.93 -489.44 -2.41 -22.11 16 7 C 0.07 2.12 6.02 85.56 0.52 2.63 16 8 C 0.44 20.18 7.82 87.66 0.69 20.87 16 9 O -0.62 -34.35 15.78 -3.07 -0.05 -34.40 16 10 N -0.57 -28.71 5.29 -306.98 -1.62 -30.33 16 11 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 12 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 13 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 14 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 15 Si 0.99 42.80 29.55 68.60 2.03 44.82 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 C -0.12 -2.05 6.24 32.06 0.20 -1.85 16 20 C 0.09 1.24 4.97 86.93 0.43 1.67 16 21 N -0.60 -13.34 3.08 -791.73 -2.44 -15.77 16 22 C 0.59 15.50 7.63 86.59 0.66 16.17 16 23 O -0.58 -20.22 15.31 -4.14 -0.06 -20.28 16 24 C -0.18 -3.63 5.92 -19.87 -0.12 -3.74 16 25 C -0.14 -1.68 8.66 22.67 0.20 -1.48 16 26 C -0.23 -1.97 11.12 66.64 0.74 -1.23 16 27 S 0.23 2.37 23.02 -56.49 -1.30 1.07 16 28 C -0.20 -3.65 10.53 67.30 0.71 -2.94 16 29 H 0.05 1.59 6.30 -2.38 -0.02 1.58 16 30 H 0.06 1.86 6.93 -2.39 -0.02 1.84 16 31 H 0.05 1.70 8.05 -2.39 -0.02 1.68 16 32 H 0.35 11.16 6.93 -89.69 -0.62 10.54 16 33 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 34 H 0.11 2.98 7.76 -2.38 -0.02 2.96 16 35 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 36 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 0.84 7.43 -2.39 -0.02 0.82 16 40 H 0.10 1.13 6.05 -2.39 -0.01 1.11 16 41 H 0.18 1.41 4.26 -2.91 -0.01 1.40 16 42 H 0.20 0.44 8.06 -2.91 -0.02 0.42 16 43 H 0.16 3.15 8.03 -2.91 -0.02 3.13 16 Total: -1.00 -75.56 364.04 0.34 -75.22 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -0.28 Total: 36.60 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.20 Total: 13.71 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -6.19 Total: -116.74 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -0.11 Total: -54.68 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.30 Total: 1.07 kcal Total: -75.56 0.34 -75.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.399 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds