Wall clock time and date at job start Tue Mar 31 2020 20:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.87032 * 2 1 4 4 C 1.54326 * 109.88412 * 238.82823 * 2 1 3 5 5 H 1.09000 * 110.72348 * 144.40514 * 4 2 1 6 6 N 1.46508 * 110.71770 * 21.13640 * 4 2 1 7 7 C 1.34776 * 119.99829 * 160.02842 * 6 4 2 8 8 O 1.21691 * 119.99834 * 359.97438 * 7 6 4 9 9 C 1.46676 * 119.99808 * 180.02562 * 7 6 4 10 10 C 1.37874 * 126.23322 * 179.97438 * 9 7 6 11 11 C 1.39835 * 107.08332 * 179.97438 * 10 9 7 12 12 C 1.35452 * 107.86799 * 0.02562 * 11 10 9 13 13 N 1.35534 * 108.86843 * 359.72842 * 12 11 10 14 14 H 0.97004 * 125.67737 * 180.30280 * 13 12 11 15 15 C 1.55151 * 102.94313 * 262.77524 * 4 2 1 16 16 C 1.54917 * 101.58025 * 324.49587 * 15 4 2 17 17 N 1.47021 * 109.88339 * 121.01977 * 2 1 3 18 18 C 1.34779 * 125.64696 * 300.43824 * 17 2 1 19 19 O 1.21279 * 119.99872 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99740 * 180.02562 * 18 17 2 21 21 S 1.81001 * 109.47051 * 180.02562 * 20 18 17 22 22 C 1.76197 * 100.00121 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00221 * 0.02562 * 22 21 20 24 24 C 1.38795 * 120.00079 * 180.02562 * 22 21 20 25 25 N 1.31638 * 119.99848 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00356 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46802 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47252 * 119.99517 * 26 24 22 29 29 H 1.48499 * 109.47399 * 239.99921 * 26 24 22 30 30 H 1.09000 * 109.46431 * 300.43206 * 1 2 3 31 31 H 1.08994 * 109.47054 * 60.43326 * 1 2 3 32 32 H 1.09002 * 109.46744 * 180.43728 * 1 2 3 33 33 H 0.96996 * 120.00047 * 340.02465 * 6 4 2 34 34 H 1.08001 * 126.45764 * 359.96321 * 10 9 7 35 35 H 1.07999 * 126.06361 * 180.02562 * 11 10 9 36 36 H 1.08004 * 125.56303 * 179.97438 * 12 11 10 37 37 H 1.08998 * 111.00631 * 206.42424 * 15 4 2 38 38 H 1.09004 * 111.00792 * 82.56822 * 15 4 2 39 39 H 1.09002 * 110.36419 * 155.85111 * 16 15 4 40 40 H 1.08994 * 110.36559 * 278.05860 * 16 15 4 41 41 H 1.09001 * 109.46965 * 299.99561 * 20 18 17 42 42 H 1.09002 * 109.47503 * 59.99893 * 20 18 17 43 43 H 0.97003 * 119.99393 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 2.9657 -0.2853 -1.6180 6 7 1.0293 -0.8057 -2.2865 7 6 1.3821 -1.0427 -3.5654 8 8 2.5526 -1.2110 -3.8525 9 6 0.3553 -1.0967 -4.6115 10 6 0.5705 -1.3285 -5.9534 11 6 -0.6784 -1.2945 -6.5816 12 6 -1.6138 -1.0475 -5.6336 13 7 -0.9992 -0.9309 -4.4313 14 1 -1.4403 -0.7577 -3.5849 15 6 2.3520 -2.1704 -0.6895 16 6 2.8569 -1.8487 0.7393 17 7 2.0301 -0.7125 1.1848 18 6 1.7754 -0.3811 2.4662 19 8 1.0786 0.5792 2.7172 20 6 2.3566 -1.2040 3.5870 21 16 1.8365 -0.5115 5.1764 22 6 2.6340 -1.6346 6.2751 23 1 3.2264 -2.4470 5.8808 24 6 2.5010 -1.4751 7.6475 25 7 1.7794 -0.4846 8.1281 26 14 3.3471 -2.6652 8.8124 27 1 4.0918 -3.6817 8.0267 28 1 4.2931 -1.9196 9.6809 29 1 2.3285 -3.3410 9.6557 30 1 -0.3632 0.5206 0.8861 31 1 -0.3633 0.5071 -0.8938 32 1 -0.3633 -1.0277 0.0078 33 1 0.0963 -0.6712 -2.0577 34 1 1.5239 -1.5031 -6.4297 35 1 -0.8641 -1.4395 -7.6356 36 1 -2.6764 -0.9618 -5.8070 37 1 3.1271 -2.6635 -1.2761 38 1 1.4453 -2.7745 -0.6567 39 1 2.7090 -2.7061 1.3958 40 1 3.9097 -1.5676 0.7151 41 1 2.0018 -2.2314 3.5052 42 1 3.4446 -1.1891 3.5224 43 1 1.6868 -0.3730 9.0873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735296183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:47 Heat of formation + Delta-G solvation = -13.938110 kcal Electronic energy + Delta-G solvation = -26018.429042 eV Core-core repulsion = 22190.979205 eV Total energy + Delta-G solvation = -3827.449838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.71156 -40.54260 -39.13388 -37.40411 -34.65159 -32.46167 -31.82130 -31.47912 -31.07754 -29.62531 -28.42155 -26.14795 -25.52226 -23.51493 -23.02892 -21.30125 -20.53408 -20.37690 -19.60849 -19.07715 -17.77887 -16.75433 -16.73569 -16.16746 -15.63498 -15.47706 -15.21536 -14.83392 -14.49075 -14.30468 -14.17050 -14.05524 -13.99723 -13.50800 -13.14133 -13.02998 -12.85587 -12.70825 -12.67687 -12.55474 -12.27504 -12.02332 -11.80614 -11.29906 -11.09479 -11.07823 -11.04173 -10.78373 -10.47435 -9.84140 -9.54341 -9.44743 -9.43728 -9.10536 -8.67531 -8.63664 -8.27520 -6.54236 -6.25188 -3.96014 1.05886 2.33752 2.49607 2.65146 2.92652 2.99423 3.02822 3.19347 3.23997 3.29007 3.55627 4.04521 4.17225 4.30163 4.45285 4.61901 4.69324 4.82727 4.93015 4.96046 5.00241 5.04027 5.09104 5.10291 5.19679 5.37653 5.47908 5.56172 5.62156 5.64252 5.73874 5.74679 5.77835 5.87956 5.98341 6.06841 6.10103 6.26217 6.38147 6.47792 6.86346 7.06786 7.55787 7.57611 7.76977 8.32213 8.47171 9.20474 10.82283 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032204 B = 0.001993 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.251192 B =14046.972004 C =14430.320638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 H 0.084 0.916 4 C 0.140 3.860 5 H 0.108 0.892 6 N -0.724 5.724 7 C 0.591 3.409 8 O -0.526 6.526 9 C -0.059 4.059 10 C -0.104 4.104 11 C -0.213 4.213 12 C 0.025 3.975 13 N -0.541 5.541 14 H 0.416 0.584 15 C -0.142 4.142 16 C 0.101 3.899 17 N -0.621 5.621 18 C 0.552 3.448 19 O -0.512 6.512 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.280 1.280 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 -2.985 -27.649 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.028 3.972 3 H 0.102 0.898 4 C 0.034 3.966 5 H 0.126 0.874 6 N -0.378 5.378 7 C 0.378 3.622 8 O -0.401 6.401 9 C -0.172 4.172 10 C -0.131 4.131 11 C -0.237 4.237 12 C -0.111 4.111 13 N -0.137 5.137 14 H 0.253 0.747 15 C -0.181 4.181 16 C -0.023 4.023 17 N -0.360 5.360 18 C 0.340 3.660 19 O -0.386 6.386 20 C -0.298 4.298 21 S 0.166 5.834 22 C -0.683 4.683 23 H 0.092 0.908 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.746 3.254 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.236 0.764 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.189 0.811 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.606 -1.524 -27.040 27.657 hybrid contribution 0.591 -1.776 0.936 2.093 sum -5.015 -3.300 -26.103 26.785 Atomic orbital electron populations 1.22186 0.95114 1.02489 1.03328 1.21527 0.94891 0.96512 0.84256 0.89799 1.21973 0.91754 0.96507 0.86317 0.87380 1.46115 1.10917 1.73821 1.06947 1.17078 0.87518 0.76413 0.81150 1.90855 1.17758 1.49680 1.81842 1.20426 0.82669 1.18091 0.96005 1.21366 0.98973 1.01765 0.90972 1.20943 0.92220 1.10872 0.99674 1.22091 0.98989 1.05930 0.84133 1.42059 1.06418 1.55467 1.09797 0.74724 1.23211 1.02772 0.96706 0.95438 1.22304 0.95314 0.89780 0.94878 1.48533 1.52117 1.30766 1.04536 1.20038 0.79984 0.84715 0.81214 1.90692 1.37372 1.28019 1.82542 1.23520 1.03887 1.02520 0.99856 1.85384 1.67108 1.40311 0.90568 1.22898 1.36469 1.15856 0.93071 0.90847 1.24998 0.95239 0.95993 0.97379 1.70032 1.37409 1.29204 1.13625 0.86108 0.79070 0.80179 0.80088 1.19592 1.20532 1.20568 0.89455 0.92192 0.92131 0.76436 0.83399 0.83796 0.81084 0.89054 0.90246 0.89812 0.90776 0.89274 0.89172 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 7.94 37.16 0.30 -1.44 16 2 C 0.13 1.47 3.48 -66.95 -0.23 1.24 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.14 1.30 3.10 -66.09 -0.21 1.10 16 5 H 0.11 1.09 7.70 -51.93 -0.40 0.69 16 6 N -0.72 -5.84 4.97 -53.33 -0.27 -6.11 16 7 C 0.59 6.01 7.78 -12.85 -0.10 5.91 16 8 O -0.53 -7.14 16.61 5.20 0.09 -7.05 16 9 C -0.06 -0.51 7.06 -81.98 -0.58 -1.09 16 10 C -0.10 -0.91 10.65 -39.12 -0.42 -1.32 16 11 C -0.21 -1.40 10.81 -39.98 -0.43 -1.84 16 12 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 13 N -0.54 -2.99 5.99 -9.39 -0.06 -3.05 16 14 H 0.42 1.19 8.19 -40.82 -0.33 0.85 16 15 C -0.14 -1.26 6.77 -24.58 -0.17 -1.43 16 16 C 0.10 1.05 6.69 -2.53 -0.02 1.03 16 17 N -0.62 -8.39 3.08 -163.01 -0.50 -8.90 16 18 C 0.55 10.12 7.65 -10.98 -0.08 10.04 16 19 O -0.51 -11.18 14.76 5.56 0.08 -11.10 16 20 C -0.15 -2.94 5.16 36.01 0.19 -2.75 16 21 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 22 C -0.53 -15.07 9.50 30.94 0.29 -14.78 16 23 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 24 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 25 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 26 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.09 1.17 6.74 -51.93 -0.35 0.82 16 31 H 0.06 0.42 6.72 -51.93 -0.35 0.07 16 32 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.40 2.38 4.86 -40.82 -0.20 2.18 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.17 0.31 8.06 -52.48 -0.42 -0.12 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.65 7.85 -51.91 -0.41 1.24 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -36.52 372.67 -9.07 -45.59 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.77 Total: 1.22 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.75 Total: -3.44 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.09 Total: -43.24 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.17 Total: -18.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.52 -9.07 -45.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735296183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.654 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds