Wall clock time and date at job start Tue Mar 31 2020 20:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.87525 * 2 1 4 4 C 1.54320 * 109.88653 * 121.02685 * 2 1 3 5 5 H 1.08999 * 110.72000 * 215.76304 * 4 2 1 6 6 N 1.46506 * 110.71726 * 338.85865 * 4 2 1 7 7 C 1.34777 * 119.99873 * 205.00338 * 6 4 2 8 8 O 1.21695 * 119.99811 * 359.97438 * 7 6 4 9 9 C 1.46676 * 119.99963 * 179.97438 * 7 6 4 10 10 C 1.37874 * 126.23351 * 180.02562 * 9 7 6 11 11 C 1.39834 * 107.08700 * 179.97438 * 10 9 7 12 12 C 1.35453 * 107.86210 * 359.97438 * 11 10 9 13 13 N 1.35535 * 108.87219 * 359.76481 * 12 11 10 14 14 H 0.97000 * 125.67275 * 180.25825 * 13 12 11 15 15 C 1.55159 * 102.94491 * 97.22002 * 4 2 1 16 16 C 1.54905 * 101.58152 * 35.49992 * 15 4 2 17 17 N 1.47025 * 109.87815 * 238.83099 * 2 1 3 18 18 C 1.34785 * 125.64657 * 59.56061 * 17 2 1 19 19 O 1.21276 * 119.99979 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99708 * 179.97438 * 18 17 2 21 21 S 1.80999 * 109.46744 * 179.97438 * 20 18 17 22 22 C 1.76205 * 100.00014 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99706 * 0.02562 * 22 21 20 24 24 C 1.38796 * 120.00004 * 180.02562 * 22 21 20 25 25 N 1.31628 * 120.00332 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99671 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47318 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46963 * 120.00300 * 26 24 22 29 29 H 1.48502 * 109.46969 * 239.99690 * 26 24 22 30 30 H 1.09009 * 109.46761 * 298.97653 * 1 2 3 31 31 H 1.09002 * 109.47372 * 58.97061 * 1 2 3 32 32 H 1.08994 * 109.47520 * 178.98002 * 1 2 3 33 33 H 0.96995 * 120.00050 * 24.72452 * 6 4 2 34 34 H 1.08001 * 126.45480 * 359.97438 * 10 9 7 35 35 H 1.07999 * 126.06939 * 179.97438 * 11 10 9 36 36 H 1.08004 * 125.56088 * 180.02562 * 12 11 10 37 37 H 1.08994 * 111.00677 * 153.58247 * 15 4 2 38 38 H 1.09004 * 111.00000 * 277.43101 * 15 4 2 39 39 H 1.08997 * 110.37009 * 204.15141 * 16 15 4 40 40 H 1.09003 * 110.36484 * 81.83150 * 16 15 4 41 41 H 1.08998 * 109.47134 * 299.99944 * 20 18 17 42 42 H 1.09000 * 109.46980 * 60.00277 * 20 18 17 43 43 H 0.97000 * 120.00050 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7480 1.2435 5 1 2.9640 -0.2793 1.6203 6 7 1.0293 -0.7998 2.2885 7 6 1.3897 -0.9321 3.5804 8 8 2.5670 -1.0091 3.8789 9 6 0.3630 -0.9834 4.6266 10 6 0.5854 -1.1150 5.9809 11 6 -0.6663 -1.1181 6.6044 12 6 -1.6104 -0.9905 5.6416 13 7 -0.9978 -0.9021 4.4358 14 1 -1.4441 -0.8008 3.5806 15 6 2.3519 -2.1687 0.6950 16 6 2.8566 -1.8508 -0.7346 17 7 2.0299 -0.7156 -1.1831 18 6 1.7751 -0.3876 -2.4653 19 8 1.0783 0.5721 -2.7188 20 6 2.3562 -1.2134 -3.5840 21 16 1.8359 -0.5250 -5.1751 22 6 2.6346 -1.6500 -6.2711 23 1 3.2268 -2.4615 -5.8747 24 6 2.5026 -1.4933 -7.6439 25 7 1.7813 -0.5039 -8.1270 26 14 3.3488 -2.6864 -8.8057 27 1 4.0923 -3.7018 -8.0174 28 1 2.3303 -3.3631 -9.6483 29 1 4.2959 -1.9431 -9.6751 30 1 -0.3633 0.4979 0.8991 31 1 -0.3634 0.5297 -0.8806 32 1 -0.3634 -1.0274 -0.0183 33 1 0.0912 -0.7347 2.0509 34 1 1.5454 -1.1998 6.4684 35 1 -0.8479 -1.2065 7.6654 36 1 -2.6771 -0.9596 5.8080 37 1 3.1269 -2.6604 1.2828 38 1 1.4451 -2.7728 0.6638 39 1 2.7086 -2.7098 -1.3890 40 1 3.9090 -1.5678 -0.7111 41 1 3.4442 -1.1983 -3.5195 42 1 2.0014 -2.2406 -3.4995 43 1 1.6888 -0.3946 -9.0864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735296184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:50 Heat of formation + Delta-G solvation = -14.329443 kcal Electronic energy + Delta-G solvation = -26011.170148 eV Core-core repulsion = 22183.703341 eV Total energy + Delta-G solvation = -3827.466807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71322 -40.53919 -39.13707 -37.40728 -34.65027 -32.46323 -31.81886 -31.47721 -31.07886 -29.62823 -28.42223 -26.14161 -25.52260 -23.52104 -23.02174 -21.29612 -20.53209 -20.41198 -19.60289 -19.07962 -17.77464 -16.75105 -16.73567 -16.15698 -15.65141 -15.46713 -15.21612 -14.83446 -14.47794 -14.29137 -14.19298 -14.05372 -13.99020 -13.50690 -13.13808 -13.03039 -12.86480 -12.71103 -12.67640 -12.55108 -12.30409 -12.02045 -11.80107 -11.29807 -11.09504 -11.08265 -11.04262 -10.78379 -10.47676 -9.84121 -9.54741 -9.44891 -9.43095 -9.10592 -8.67647 -8.63501 -8.27479 -6.54243 -6.25172 -3.96033 1.05582 2.33561 2.49520 2.65016 2.92755 2.99602 3.02399 3.19295 3.23974 3.28976 3.55688 4.06113 4.17210 4.29298 4.44919 4.61805 4.69873 4.82205 4.92904 4.96258 5.00084 5.03812 5.09834 5.10319 5.20752 5.37840 5.47532 5.55916 5.61018 5.64111 5.73398 5.74793 5.77781 5.87981 5.98028 6.07065 6.10138 6.26096 6.38427 6.47662 6.86212 7.06526 7.55899 7.57682 7.76518 8.32184 8.47452 9.20466 10.82302 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.001988 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.214286 B =14080.479363 C =14453.059851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.132 3.868 3 H 0.084 0.916 4 C 0.139 3.861 5 H 0.111 0.889 6 N -0.723 5.723 7 C 0.591 3.409 8 O -0.526 6.526 9 C -0.059 4.059 10 C -0.104 4.104 11 C -0.213 4.213 12 C 0.025 3.975 13 N -0.541 5.541 14 H 0.416 0.584 15 C -0.142 4.142 16 C 0.101 3.899 17 N -0.621 5.621 18 C 0.552 3.448 19 O -0.512 6.512 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.279 1.279 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -3.176 27.650 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.028 3.972 3 H 0.102 0.898 4 C 0.033 3.967 5 H 0.129 0.871 6 N -0.377 5.377 7 C 0.379 3.621 8 O -0.402 6.402 9 C -0.172 4.172 10 C -0.131 4.131 11 C -0.237 4.237 12 C -0.111 4.111 13 N -0.137 5.137 14 H 0.253 0.747 15 C -0.181 4.181 16 C -0.023 4.023 17 N -0.360 5.360 18 C 0.340 3.660 19 O -0.386 6.386 20 C -0.298 4.298 21 S 0.166 5.834 22 C -0.683 4.683 23 H 0.092 0.908 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.189 0.811 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.623 -1.662 27.046 27.674 hybrid contribution 0.585 -1.848 -0.944 2.157 sum -5.037 -3.510 26.101 26.814 Atomic orbital electron populations 1.22183 0.95105 1.02481 1.03310 1.21537 0.94902 0.96515 0.84292 0.89831 1.21996 0.91882 0.96472 0.86322 0.87138 1.46087 1.10326 1.75410 1.05885 1.17084 0.87614 0.76194 0.81250 1.90856 1.17307 1.49978 1.82032 1.20421 0.82369 1.18771 0.95636 1.21367 0.98975 1.01917 0.90809 1.20943 0.92012 1.11307 0.99442 1.22092 0.98952 1.06184 0.83909 1.42056 1.06007 1.56454 1.09217 0.74720 1.23208 1.02736 0.96702 0.95495 1.22303 0.95318 0.89828 0.94810 1.48534 1.52147 1.30738 1.04547 1.20039 0.79987 0.84738 0.81200 1.90692 1.37361 1.28086 1.82468 1.23519 1.03885 1.02481 0.99893 1.85387 1.67033 1.40401 0.90556 1.22898 1.36475 1.15849 0.93079 0.90848 1.24994 0.95239 0.95989 0.97364 1.70024 1.37412 1.29276 1.13555 0.86113 0.79077 0.80200 0.80089 1.19590 1.20565 1.20528 0.92169 0.89515 0.92182 0.76463 0.83398 0.83793 0.81083 0.89114 0.90229 0.89797 0.90780 0.89177 0.89282 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 7.93 37.16 0.29 -1.44 16 2 C 0.13 1.48 3.48 -66.95 -0.23 1.24 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.14 1.29 3.19 -66.09 -0.21 1.08 16 5 H 0.11 1.13 7.55 -51.93 -0.39 0.74 16 6 N -0.72 -5.82 4.89 -53.33 -0.26 -6.08 16 7 C 0.59 6.01 7.79 -12.85 -0.10 5.91 16 8 O -0.53 -7.16 16.53 5.19 0.09 -7.07 16 9 C -0.06 -0.51 7.06 -81.98 -0.58 -1.09 16 10 C -0.10 -0.91 10.65 -39.12 -0.42 -1.32 16 11 C -0.21 -1.40 10.81 -39.98 -0.43 -1.83 16 12 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 13 N -0.54 -2.98 5.99 -9.39 -0.06 -3.03 16 14 H 0.42 1.18 8.19 -40.82 -0.33 0.84 16 15 C -0.14 -1.24 6.77 -24.58 -0.17 -1.41 16 16 C 0.10 1.04 6.69 -2.53 -0.02 1.02 16 17 N -0.62 -8.39 3.08 -163.02 -0.50 -8.89 16 18 C 0.55 10.13 7.65 -10.98 -0.08 10.04 16 19 O -0.51 -11.20 14.77 5.56 0.08 -11.11 16 20 C -0.15 -2.94 5.16 36.01 0.19 -2.75 16 21 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 22 C -0.53 -15.07 9.50 30.94 0.29 -14.78 16 23 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 26 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H 0.06 0.43 6.76 -51.92 -0.35 0.08 16 31 H 0.09 1.17 6.77 -51.93 -0.35 0.82 16 32 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 33 H 0.40 2.37 4.98 -40.82 -0.20 2.16 16 34 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.17 0.30 8.06 -52.48 -0.42 -0.12 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.64 7.85 -51.91 -0.41 1.23 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -36.56 372.60 -9.07 -45.63 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.77 Total: 1.18 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.76 Total: -3.43 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.09 Total: -43.20 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.56 -9.07 -45.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735296184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.303 kcal (2) G-P(sol) polarization free energy of solvation -36.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds