Wall clock time and date at job start Tue Mar 31 2020 20:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.87525 * 2 1 4 4 C 1.54320 * 109.88653 * 121.02685 * 2 1 3 5 5 H 1.08999 * 110.72000 * 215.76304 * 4 2 1 6 6 N 1.46506 * 110.71726 * 338.85865 * 4 2 1 7 7 C 1.34777 * 119.99873 * 205.00338 * 6 4 2 8 8 O 1.21695 * 119.99811 * 359.97438 * 7 6 4 9 9 C 1.46676 * 119.99963 * 179.97438 * 7 6 4 10 10 C 1.37874 * 126.23351 * 180.02562 * 9 7 6 11 11 C 1.39834 * 107.08700 * 179.97438 * 10 9 7 12 12 C 1.35453 * 107.86210 * 359.97438 * 11 10 9 13 13 N 1.35535 * 108.87219 * 359.76481 * 12 11 10 14 14 H 0.97000 * 125.67275 * 180.25825 * 13 12 11 15 15 C 1.55159 * 102.94491 * 97.22002 * 4 2 1 16 16 C 1.54905 * 101.58152 * 35.49992 * 15 4 2 17 17 N 1.47025 * 109.87815 * 238.83099 * 2 1 3 18 18 C 1.34785 * 125.64657 * 59.56061 * 17 2 1 19 19 O 1.21276 * 119.99979 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99708 * 179.97438 * 18 17 2 21 21 S 1.80999 * 109.46744 * 179.97438 * 20 18 17 22 22 C 1.76205 * 100.00014 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99706 * 0.02562 * 22 21 20 24 24 C 1.38796 * 120.00004 * 180.02562 * 22 21 20 25 25 N 1.31628 * 120.00332 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99671 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47318 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46963 * 120.00300 * 26 24 22 29 29 H 1.48502 * 109.46969 * 239.99690 * 26 24 22 30 30 H 1.09009 * 109.46761 * 298.97653 * 1 2 3 31 31 H 1.09002 * 109.47372 * 58.97061 * 1 2 3 32 32 H 1.08994 * 109.47520 * 178.98002 * 1 2 3 33 33 H 0.96995 * 120.00050 * 24.72452 * 6 4 2 34 34 H 1.08001 * 126.45480 * 359.97438 * 10 9 7 35 35 H 1.07999 * 126.06939 * 179.97438 * 11 10 9 36 36 H 1.08004 * 125.56088 * 180.02562 * 12 11 10 37 37 H 1.08994 * 111.00677 * 153.58247 * 15 4 2 38 38 H 1.09004 * 111.00000 * 277.43101 * 15 4 2 39 39 H 1.08997 * 110.37009 * 204.15141 * 16 15 4 40 40 H 1.09003 * 110.36484 * 81.83150 * 16 15 4 41 41 H 1.08998 * 109.47134 * 299.99944 * 20 18 17 42 42 H 1.09000 * 109.46980 * 60.00277 * 20 18 17 43 43 H 0.97000 * 120.00050 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7480 1.2435 5 1 2.9640 -0.2793 1.6203 6 7 1.0293 -0.7998 2.2885 7 6 1.3897 -0.9321 3.5804 8 8 2.5670 -1.0091 3.8789 9 6 0.3630 -0.9834 4.6266 10 6 0.5854 -1.1150 5.9809 11 6 -0.6663 -1.1181 6.6044 12 6 -1.6104 -0.9905 5.6416 13 7 -0.9978 -0.9021 4.4358 14 1 -1.4441 -0.8008 3.5806 15 6 2.3519 -2.1687 0.6950 16 6 2.8566 -1.8508 -0.7346 17 7 2.0299 -0.7156 -1.1831 18 6 1.7751 -0.3876 -2.4653 19 8 1.0783 0.5721 -2.7188 20 6 2.3562 -1.2134 -3.5840 21 16 1.8359 -0.5250 -5.1751 22 6 2.6346 -1.6500 -6.2711 23 1 3.2268 -2.4615 -5.8747 24 6 2.5026 -1.4933 -7.6439 25 7 1.7813 -0.5039 -8.1270 26 14 3.3488 -2.6864 -8.8057 27 1 4.0923 -3.7018 -8.0174 28 1 2.3303 -3.3631 -9.6483 29 1 4.2959 -1.9431 -9.6751 30 1 -0.3633 0.4979 0.8991 31 1 -0.3634 0.5297 -0.8806 32 1 -0.3634 -1.0274 -0.0183 33 1 0.0912 -0.7347 2.0509 34 1 1.5454 -1.1998 6.4684 35 1 -0.8479 -1.2065 7.6654 36 1 -2.6771 -0.9596 5.8080 37 1 3.1269 -2.6604 1.2828 38 1 1.4451 -2.7728 0.6638 39 1 2.7086 -2.7098 -1.3890 40 1 3.9090 -1.5678 -0.7111 41 1 3.4442 -1.1983 -3.5195 42 1 2.0014 -2.2406 -3.4995 43 1 1.6888 -0.3946 -9.0864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735296184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:49 Heat of formation + Delta-G solvation = -40.201923 kcal Electronic energy + Delta-G solvation = -26012.292063 eV Core-core repulsion = 22183.703341 eV Total energy + Delta-G solvation = -3828.588722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.29033 -41.50375 -40.12141 -38.57403 -35.58995 -34.59874 -32.75538 -32.26643 -31.85242 -30.50159 -29.55906 -27.67114 -26.96535 -24.37997 -23.90646 -21.93476 -21.23579 -21.08668 -20.47560 -20.09347 -19.58088 -18.10811 -17.57904 -16.94927 -16.89442 -16.76394 -16.42232 -16.21185 -15.81625 -15.49550 -15.10903 -14.79182 -14.62528 -14.60780 -14.48888 -14.07447 -13.87375 -13.69835 -13.54403 -13.25346 -13.18454 -13.17016 -13.11367 -12.93046 -12.82513 -12.60303 -12.15697 -11.90232 -11.71783 -11.30824 -11.17014 -10.92400 -10.33250 -10.28003 -9.95067 -9.79426 -9.18936 -8.68403 -8.36209 -6.14222 0.43906 1.19941 1.40525 1.41989 1.53587 1.55157 1.81474 1.84453 2.14694 2.25033 2.26498 2.33223 2.98223 3.13072 3.31524 3.47355 3.79387 3.82250 3.91658 4.03957 4.18183 4.22062 4.24899 4.34077 4.40705 4.43065 4.45807 4.51719 4.61057 4.68254 4.84073 4.92035 5.00198 5.11372 5.14148 5.25102 5.30513 5.37751 5.41136 5.73938 5.93399 6.18782 6.30139 6.36409 6.58131 7.03477 7.05457 7.08666 8.73193 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.001988 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.214286 B =14080.479363 C =14453.059851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.128 3.872 3 H 0.073 0.927 4 C 0.149 3.851 5 H 0.103 0.897 6 N -0.709 5.709 7 C 0.592 3.408 8 O -0.568 6.568 9 C -0.084 4.084 10 C -0.124 4.124 11 C -0.231 4.231 12 C 0.046 3.954 13 N -0.530 5.530 14 H 0.429 0.571 15 C -0.131 4.131 16 C 0.093 3.907 17 N -0.611 5.611 18 C 0.551 3.449 19 O -0.557 6.557 20 C -0.122 4.122 21 S -0.147 6.147 22 C -0.545 4.545 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.257 1.257 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.410 0.590 34 H 0.137 0.863 35 H 0.160 0.840 36 H 0.211 0.789 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 -5.131 29.193 30.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 H 0.091 0.909 4 C 0.043 3.957 5 H 0.121 0.879 6 N -0.364 5.364 7 C 0.382 3.618 8 O -0.447 6.447 9 C -0.197 4.197 10 C -0.151 4.151 11 C -0.254 4.254 12 C -0.092 4.092 13 N -0.127 5.127 14 H 0.269 0.731 15 C -0.170 4.170 16 C -0.029 4.029 17 N -0.347 5.347 18 C 0.340 3.660 19 O -0.435 6.435 20 C -0.273 4.273 21 S 0.080 5.920 22 C -0.693 4.693 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.820 3.180 27 H -0.180 1.180 28 H -0.199 1.199 29 H -0.200 1.200 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.228 0.772 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.139 -3.638 28.615 29.491 hybrid contribution 0.700 -1.223 -1.225 1.867 sum -5.439 -4.861 27.390 28.345 Atomic orbital electron populations 1.22125 0.94028 1.03164 1.03241 1.21675 0.95814 0.96053 0.84025 0.90904 1.21802 0.91777 0.96611 0.85542 0.87890 1.45904 1.10677 1.74717 1.05055 1.17278 0.87371 0.75387 0.81779 1.90830 1.19063 1.52153 1.82667 1.20170 0.83455 1.21006 0.95069 1.21539 0.99678 1.02481 0.91452 1.21228 0.91432 1.11986 1.00753 1.22736 1.00427 1.03009 0.82989 1.42051 1.04845 1.55512 1.10274 0.73099 1.23159 1.03440 0.96188 0.94172 1.22604 0.95555 0.88887 0.95880 1.48404 1.51392 1.31325 1.03582 1.19697 0.79804 0.84112 0.82417 1.90680 1.39493 1.29881 1.83414 1.23326 1.04661 1.03001 0.96325 1.85545 1.68288 1.42494 0.95666 1.23229 1.36479 1.15937 0.93683 0.89936 1.26115 0.95805 0.97873 0.99309 1.70182 1.39054 1.31399 1.14092 0.84915 0.77928 0.77728 0.77439 1.18019 1.19889 1.19980 0.88993 0.92985 0.90943 0.75059 0.84529 0.82287 0.77199 0.88097 0.89293 0.88928 0.89508 0.87673 0.87419 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 7.93 71.98 0.57 -2.59 16 2 C 0.13 2.74 3.48 45.34 0.16 2.89 16 3 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 4 C 0.15 2.52 3.19 46.18 0.15 2.67 16 5 H 0.10 2.00 7.55 -2.39 -0.02 1.98 16 6 N -0.71 -10.08 4.89 -440.86 -2.16 -12.24 16 7 C 0.59 11.47 7.79 86.45 0.67 12.14 16 8 O -0.57 -15.44 16.53 -4.33 -0.07 -15.51 16 9 C -0.08 -1.35 7.06 40.35 0.28 -1.06 16 10 C -0.12 -2.10 10.65 22.57 0.24 -1.86 16 11 C -0.23 -2.57 10.81 22.01 0.24 -2.33 16 12 C 0.05 0.30 11.89 83.48 0.99 1.29 16 13 N -0.53 -4.34 5.99 -183.62 -1.10 -5.44 16 14 H 0.43 0.97 8.19 -92.71 -0.76 0.21 16 15 C -0.13 -1.95 6.77 31.99 0.22 -1.74 16 16 C 0.09 1.71 6.69 86.85 0.58 2.29 16 17 N -0.61 -15.86 3.08 -788.07 -2.43 -18.29 16 18 C 0.55 20.27 7.65 87.66 0.67 20.95 16 19 O -0.56 -25.15 14.77 -3.02 -0.04 -25.19 16 20 C -0.12 -4.82 5.16 71.24 0.37 -4.45 16 21 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 22 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 23 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 24 C 0.01 0.78 5.49 84.86 0.47 1.24 16 25 N -0.91 -55.57 13.22 21.65 0.29 -55.29 16 26 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 27 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 30 H 0.09 1.10 6.76 -2.38 -0.02 1.08 16 31 H 0.05 1.41 6.77 -2.39 -0.02 1.39 16 32 H 0.07 1.18 8.04 -2.39 -0.02 1.16 16 33 H 0.41 3.78 4.98 -92.71 -0.46 3.32 16 34 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.21 -0.31 8.06 -2.91 -0.02 -0.34 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.59 7.48 -2.39 -0.02 1.58 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.11 3.83 7.85 -2.40 -0.02 3.81 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -83.32 372.60 1.44 -81.88 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.17 Total: 14.82 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.25 Total: -0.82 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -5.40 Total: -91.25 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.12 Total: -40.70 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -83.32 1.44 -81.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735296184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.678 kcal (2) G-P(sol) polarization free energy of solvation -83.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds