Wall clock time and date at job start Tue Mar 31 2020 20:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00297 * 2 1 4 4 C 1.54330 * 109.87887 * 121.09629 * 2 1 3 5 5 H 1.08995 * 110.72298 * 23.24582 * 4 2 1 6 6 N 1.46495 * 110.71650 * 259.96932 * 4 2 1 7 7 C 1.34778 * 120.00194 * 155.00173 * 6 4 2 8 8 O 1.21700 * 119.99565 * 0.02562 * 7 6 4 9 9 C 1.46669 * 120.00620 * 179.97438 * 7 6 4 10 10 C 1.37874 * 126.23646 * 180.02562 * 9 7 6 11 11 C 1.39840 * 107.08684 * 180.02562 * 10 9 7 12 12 C 1.35447 * 107.86174 * 359.97438 * 11 10 9 13 13 N 1.35530 * 108.87826 * 359.73407 * 12 11 10 14 14 H 0.96997 * 125.68563 * 180.30248 * 13 12 11 15 15 C 1.55164 * 102.94081 * 141.60993 * 4 2 1 16 16 C 1.54910 * 101.57954 * 324.49447 * 15 4 2 17 17 N 1.47026 * 109.88306 * 238.89944 * 2 1 3 18 18 C 1.34775 * 125.64611 * 61.60954 * 17 2 1 19 19 O 1.21286 * 120.00071 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00166 * 180.02562 * 18 17 2 21 21 S 1.81000 * 109.47182 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99897 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99968 * 0.02562 * 22 21 20 24 24 C 1.38800 * 120.00311 * 179.97438 * 22 21 20 25 25 N 1.31632 * 119.99699 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00368 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47359 * 60.00068 * 26 24 22 28 28 H 1.48500 * 109.47233 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47189 * 300.00042 * 26 24 22 30 30 H 1.08992 * 109.47824 * 179.64232 * 1 2 3 31 31 H 1.09003 * 109.47081 * 299.64934 * 1 2 3 32 32 H 1.09003 * 109.46640 * 59.63966 * 1 2 3 33 33 H 0.96998 * 120.00764 * 334.99786 * 6 4 2 34 34 H 1.07998 * 126.45739 * 359.95602 * 10 9 7 35 35 H 1.07998 * 126.06489 * 180.02562 * 11 10 9 36 36 H 1.08005 * 125.56033 * 180.02562 * 12 11 10 37 37 H 1.08999 * 110.99996 * 206.42134 * 15 4 2 38 38 H 1.08992 * 111.03715 * 82.58261 * 15 4 2 39 39 H 1.08996 * 110.36628 * 278.17334 * 16 15 4 40 40 H 1.08996 * 110.36403 * 155.85355 * 16 15 4 41 41 H 1.09007 * 109.47083 * 300.00206 * 20 18 17 42 42 H 1.08997 * 109.47275 * 60.00176 * 20 18 17 43 43 H 0.97003 * 120.00222 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7496 1.2428 5 1 1.3050 -1.4459 1.6183 6 7 2.4554 0.1960 2.2875 7 6 2.4581 -0.1883 3.5793 8 8 2.1281 -1.3210 3.8778 9 6 2.8597 0.7582 4.6253 10 6 2.9101 0.5034 5.9793 11 6 3.3426 1.6781 6.6027 12 6 3.5449 2.6091 5.6399 13 7 3.2611 2.0609 4.4333 14 1 3.3274 2.5121 3.5772 15 6 3.2876 -1.5144 0.6924 16 6 2.8144 -1.8795 -0.7367 17 7 2.0300 -0.7142 -1.1839 18 6 1.8074 -0.3622 -2.4657 19 8 1.1437 0.6211 -2.7180 20 6 2.3833 -1.1902 -3.5854 21 16 1.9125 -0.4653 -5.1756 22 6 2.6964 -1.5994 -6.2729 23 1 3.2567 -2.4337 -5.8774 24 6 2.5930 -1.4211 -7.6455 25 7 1.9097 -0.4045 -8.1275 26 14 3.4235 -2.6238 -8.8087 27 1 2.8801 -3.9870 -8.5822 28 1 3.1642 -2.2141 -10.2124 29 1 4.8869 -2.6261 -8.5565 30 1 -0.3634 -1.0275 -0.0064 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5194 -0.8868 33 1 2.7188 1.0987 2.0496 34 1 2.6613 -0.4276 6.4668 35 1 3.4900 1.8179 7.6634 36 1 3.8823 3.6215 5.8061 37 1 3.4851 -2.4111 1.2797 38 1 4.1657 -0.8696 0.6604 39 1 2.1885 -2.7715 -0.7127 40 1 3.6715 -2.0341 -1.3921 41 1 3.4700 -1.2083 -3.5021 42 1 1.9970 -2.2074 -3.5208 43 1 1.8371 -0.2801 -9.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735296185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:52 Heat of formation + Delta-G solvation = -21.244206 kcal Electronic energy + Delta-G solvation = -25887.097822 eV Core-core repulsion = 22059.331168 eV Total energy + Delta-G solvation = -3827.766654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69732 -40.44496 -39.15302 -37.35645 -34.58811 -32.45695 -31.93390 -31.52994 -31.06228 -29.63410 -28.47697 -25.85650 -25.51312 -23.21958 -22.95050 -21.48135 -20.89167 -20.50533 -19.63459 -18.78582 -17.72830 -17.13469 -16.46351 -16.00415 -15.79416 -15.49767 -14.96576 -14.82663 -14.46694 -14.24441 -14.06472 -14.05048 -13.97523 -13.77437 -13.05501 -12.97268 -12.91961 -12.71527 -12.61814 -12.55641 -12.22621 -11.86291 -11.75060 -11.48122 -11.07212 -11.06401 -11.02289 -10.79331 -10.49945 -9.85615 -9.58519 -9.45057 -9.40146 -9.08546 -8.67885 -8.62581 -8.27902 -6.53850 -6.24321 -3.95422 1.04978 2.33226 2.45977 2.64715 2.95531 2.99205 3.01688 3.21646 3.24197 3.27383 3.56329 4.06001 4.17867 4.28325 4.44129 4.61947 4.71925 4.89024 4.92254 4.93004 5.00062 5.03554 5.10844 5.16311 5.39539 5.46529 5.49531 5.58894 5.63422 5.66601 5.72910 5.74048 5.79750 5.87317 6.04934 6.09241 6.16912 6.25951 6.40956 6.47388 6.86039 7.05279 7.55999 7.57913 7.75026 8.32255 8.48008 9.20891 10.83016 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.001973 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.165030 B =14190.107742 C =14388.024947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.076 0.924 4 C 0.138 3.862 5 H 0.112 0.888 6 N -0.722 5.722 7 C 0.593 3.407 8 O -0.525 6.525 9 C -0.059 4.059 10 C -0.104 4.104 11 C -0.213 4.213 12 C 0.025 3.975 13 N -0.541 5.541 14 H 0.416 0.584 15 C -0.144 4.144 16 C 0.101 3.899 17 N -0.622 5.622 18 C 0.551 3.449 19 O -0.512 6.512 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.395 0.605 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 3.438 27.732 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.094 0.906 4 C 0.033 3.967 5 H 0.130 0.870 6 N -0.373 5.373 7 C 0.381 3.619 8 O -0.401 6.401 9 C -0.172 4.172 10 C -0.131 4.131 11 C -0.237 4.237 12 C -0.111 4.111 13 N -0.137 5.137 14 H 0.254 0.746 15 C -0.183 4.183 16 C -0.022 4.022 17 N -0.360 5.360 18 C 0.340 3.660 19 O -0.386 6.386 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.229 0.771 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.189 0.811 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.919 4.226 27.123 27.605 hybrid contribution 1.573 -1.174 -0.941 2.177 sum 4.492 3.053 26.181 26.739 Atomic orbital electron populations 1.22149 0.93934 1.02833 1.03208 1.21554 0.95270 0.96064 0.84160 0.90645 1.22101 0.97340 0.91017 0.86248 0.86974 1.45811 1.69526 1.15864 1.06054 1.17043 0.77213 0.86553 0.81100 1.90862 1.48100 1.19183 1.81927 1.20408 1.15534 0.85666 0.95603 1.21368 1.01454 0.99399 0.90849 1.20943 1.09715 0.93615 0.99464 1.22088 1.05268 0.99855 0.83890 1.42058 1.51814 1.10673 1.09144 0.74638 1.23221 0.97915 1.01632 0.95546 1.22303 0.95932 0.89199 0.94789 1.48529 1.54095 1.28806 1.04568 1.20039 0.79708 0.85030 0.81219 1.90698 1.38485 1.26936 1.82486 1.23519 1.03668 1.02708 0.99888 1.85382 1.69705 1.37683 0.90527 1.22816 1.38388 1.14142 0.93090 0.90958 1.24991 0.95220 0.95990 0.97343 1.70006 1.38417 1.28094 1.13754 0.86220 0.79628 0.80553 0.79086 1.19905 1.20792 1.19937 0.92106 0.91978 0.90327 0.77051 0.83410 0.83803 0.81095 0.89113 0.90190 0.90859 0.89768 0.89285 0.89183 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.10 37.16 0.34 -1.58 16 2 C 0.13 1.51 3.21 -66.95 -0.21 1.29 16 3 H 0.08 0.83 7.72 -51.93 -0.40 0.43 16 4 C 0.14 1.28 2.84 -66.09 -0.19 1.09 16 5 H 0.11 1.16 7.26 -51.93 -0.38 0.78 16 6 N -0.72 -5.65 5.17 -53.33 -0.28 -5.93 16 7 C 0.59 5.93 7.79 -12.86 -0.10 5.83 16 8 O -0.53 -7.09 16.53 5.19 0.09 -7.00 16 9 C -0.06 -0.51 7.06 -81.98 -0.58 -1.08 16 10 C -0.10 -0.90 10.65 -39.12 -0.42 -1.32 16 11 C -0.21 -1.40 10.81 -39.98 -0.43 -1.83 16 12 C 0.03 0.13 11.89 -16.91 -0.20 -0.08 16 13 N -0.54 -2.90 5.99 -9.39 -0.06 -2.96 16 14 H 0.42 1.09 8.19 -40.82 -0.33 0.76 16 15 C -0.14 -1.25 6.77 -24.58 -0.17 -1.42 16 16 C 0.10 1.05 6.69 -2.53 -0.02 1.03 16 17 N -0.62 -8.46 3.06 -163.02 -0.50 -8.96 16 18 C 0.55 10.19 7.66 -10.99 -0.08 10.10 16 19 O -0.51 -11.28 14.90 5.55 0.08 -11.20 16 20 C -0.15 -2.95 5.16 36.00 0.19 -2.76 16 21 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 22 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 23 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 26 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.16 6.88 -51.93 -0.36 0.80 16 33 H 0.40 2.14 7.50 -40.82 -0.31 1.84 16 34 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.17 0.30 8.06 -52.48 -0.42 -0.12 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.84 7.48 -51.93 -0.39 0.46 16 41 H 0.09 1.65 7.85 -51.91 -0.41 1.24 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -36.69 376.96 -9.08 -45.77 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.92 Total: 0.97 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.68 Total: -3.55 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.10 Total: -43.06 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.17 Total: -18.20 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.69 -9.08 -45.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735296185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.523 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds