Wall clock time and date at job start Tue Mar 31 2020 20:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00297 * 2 1 4 4 C 1.54330 * 109.87887 * 121.09629 * 2 1 3 5 5 H 1.08995 * 110.72298 * 23.24582 * 4 2 1 6 6 N 1.46495 * 110.71650 * 259.96932 * 4 2 1 7 7 C 1.34778 * 120.00194 * 155.00173 * 6 4 2 8 8 O 1.21700 * 119.99565 * 0.02562 * 7 6 4 9 9 C 1.46669 * 120.00620 * 179.97438 * 7 6 4 10 10 C 1.37874 * 126.23646 * 180.02562 * 9 7 6 11 11 C 1.39840 * 107.08684 * 180.02562 * 10 9 7 12 12 C 1.35447 * 107.86174 * 359.97438 * 11 10 9 13 13 N 1.35530 * 108.87826 * 359.73407 * 12 11 10 14 14 H 0.96997 * 125.68563 * 180.30248 * 13 12 11 15 15 C 1.55164 * 102.94081 * 141.60993 * 4 2 1 16 16 C 1.54910 * 101.57954 * 324.49447 * 15 4 2 17 17 N 1.47026 * 109.88306 * 238.89944 * 2 1 3 18 18 C 1.34775 * 125.64611 * 61.60954 * 17 2 1 19 19 O 1.21286 * 120.00071 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00166 * 180.02562 * 18 17 2 21 21 S 1.81000 * 109.47182 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99897 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99968 * 0.02562 * 22 21 20 24 24 C 1.38800 * 120.00311 * 179.97438 * 22 21 20 25 25 N 1.31632 * 119.99699 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00368 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47359 * 60.00068 * 26 24 22 28 28 H 1.48500 * 109.47233 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47189 * 300.00042 * 26 24 22 30 30 H 1.08992 * 109.47824 * 179.64232 * 1 2 3 31 31 H 1.09003 * 109.47081 * 299.64934 * 1 2 3 32 32 H 1.09003 * 109.46640 * 59.63966 * 1 2 3 33 33 H 0.96998 * 120.00764 * 334.99786 * 6 4 2 34 34 H 1.07998 * 126.45739 * 359.95602 * 10 9 7 35 35 H 1.07998 * 126.06489 * 180.02562 * 11 10 9 36 36 H 1.08005 * 125.56033 * 180.02562 * 12 11 10 37 37 H 1.08999 * 110.99996 * 206.42134 * 15 4 2 38 38 H 1.08992 * 111.03715 * 82.58261 * 15 4 2 39 39 H 1.08996 * 110.36628 * 278.17334 * 16 15 4 40 40 H 1.08996 * 110.36403 * 155.85355 * 16 15 4 41 41 H 1.09007 * 109.47083 * 300.00206 * 20 18 17 42 42 H 1.08997 * 109.47275 * 60.00176 * 20 18 17 43 43 H 0.97003 * 120.00222 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7496 1.2428 5 1 1.3050 -1.4459 1.6183 6 7 2.4554 0.1960 2.2875 7 6 2.4581 -0.1883 3.5793 8 8 2.1281 -1.3210 3.8778 9 6 2.8597 0.7582 4.6253 10 6 2.9101 0.5034 5.9793 11 6 3.3426 1.6781 6.6027 12 6 3.5449 2.6091 5.6399 13 7 3.2611 2.0609 4.4333 14 1 3.3274 2.5121 3.5772 15 6 3.2876 -1.5144 0.6924 16 6 2.8144 -1.8795 -0.7367 17 7 2.0300 -0.7142 -1.1839 18 6 1.8074 -0.3622 -2.4657 19 8 1.1437 0.6211 -2.7180 20 6 2.3833 -1.1902 -3.5854 21 16 1.9125 -0.4653 -5.1756 22 6 2.6964 -1.5994 -6.2729 23 1 3.2567 -2.4337 -5.8774 24 6 2.5930 -1.4211 -7.6455 25 7 1.9097 -0.4045 -8.1275 26 14 3.4235 -2.6238 -8.8087 27 1 2.8801 -3.9870 -8.5822 28 1 3.1642 -2.2141 -10.2124 29 1 4.8869 -2.6261 -8.5565 30 1 -0.3634 -1.0275 -0.0064 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5194 -0.8868 33 1 2.7188 1.0987 2.0496 34 1 2.6613 -0.4276 6.4668 35 1 3.4900 1.8179 7.6634 36 1 3.8823 3.6215 5.8061 37 1 3.4851 -2.4111 1.2797 38 1 4.1657 -0.8696 0.6604 39 1 2.1885 -2.7715 -0.7127 40 1 3.6715 -2.0341 -1.3921 41 1 3.4700 -1.2083 -3.5021 42 1 1.9970 -2.2074 -3.5208 43 1 1.8371 -0.2801 -9.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735296185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:51 Heat of formation + Delta-G solvation = -47.433150 kcal Electronic energy + Delta-G solvation = -25888.233459 eV Core-core repulsion = 22059.331168 eV Total energy + Delta-G solvation = -3828.902292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.25562 -41.44677 -40.11347 -38.53515 -35.49908 -34.59245 -32.96431 -32.26942 -31.83829 -30.48936 -29.65935 -27.66290 -26.71368 -24.05019 -23.90129 -22.23142 -21.48253 -21.09318 -20.62657 -19.83164 -19.44345 -18.27324 -17.55044 -16.89554 -16.86884 -16.76741 -16.38878 -16.18451 -15.77679 -15.32262 -15.06545 -14.89292 -14.63708 -14.58081 -14.48284 -14.11415 -13.96662 -13.69020 -13.53852 -13.28520 -13.18992 -13.17269 -13.03015 -12.87288 -12.72705 -12.61602 -12.34786 -11.90271 -11.75040 -11.32553 -11.13563 -10.94239 -10.32484 -10.28313 -9.94768 -9.79199 -9.18838 -8.68176 -8.35365 -6.13682 0.43994 1.19517 1.41731 1.43383 1.52370 1.54497 1.79528 1.84401 2.15685 2.26110 2.27940 2.33331 2.98776 3.13070 3.30918 3.46813 3.81702 3.84730 3.87233 4.08775 4.14189 4.23502 4.24928 4.34445 4.43153 4.44276 4.50655 4.53738 4.64258 4.69585 4.83265 4.92759 5.00206 5.12397 5.14887 5.24971 5.29510 5.37813 5.40925 5.74080 5.93556 6.18745 6.29909 6.36784 6.58947 7.03641 7.05857 7.08491 8.73492 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.001973 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.165030 B =14190.107742 C =14388.024947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 H 0.082 0.918 4 C 0.149 3.851 5 H 0.105 0.895 6 N -0.708 5.708 7 C 0.595 3.405 8 O -0.567 6.567 9 C -0.083 4.083 10 C -0.125 4.125 11 C -0.231 4.231 12 C 0.045 3.955 13 N -0.529 5.529 14 H 0.430 0.570 15 C -0.133 4.133 16 C 0.093 3.907 17 N -0.612 5.612 18 C 0.551 3.449 19 O -0.557 6.557 20 C -0.122 4.122 21 S -0.147 6.147 22 C -0.547 4.547 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.263 1.263 28 H -0.279 1.279 29 H -0.261 1.261 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.409 0.591 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.211 0.789 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 3.119 29.194 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 H 0.100 0.900 4 C 0.043 3.957 5 H 0.123 0.877 6 N -0.359 5.359 7 C 0.385 3.615 8 O -0.446 6.446 9 C -0.196 4.196 10 C -0.152 4.152 11 C -0.254 4.254 12 C -0.092 4.092 13 N -0.126 5.126 14 H 0.270 0.730 15 C -0.171 4.171 16 C -0.029 4.029 17 N -0.347 5.347 18 C 0.340 3.660 19 O -0.435 6.435 20 C -0.273 4.273 21 S 0.080 5.920 22 C -0.695 4.695 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.187 1.187 28 H -0.204 1.204 29 H -0.186 1.186 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.246 0.754 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.227 0.773 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.887 3.914 28.611 29.288 hybrid contribution 0.970 -1.025 -1.197 1.850 sum 5.857 2.889 27.414 28.181 Atomic orbital electron populations 1.22086 0.94361 1.02625 1.02597 1.21685 0.94946 0.96497 0.83925 0.90041 1.21882 0.97544 0.90809 0.85471 0.87722 1.45624 1.68827 1.16310 1.05177 1.17220 0.76480 0.86218 0.81625 1.90835 1.50228 1.20990 1.82579 1.20165 1.17525 0.86889 0.95042 1.21539 1.02124 1.00035 0.91508 1.21225 1.10238 0.93218 1.00758 1.22723 1.02609 1.00881 0.83005 1.42057 1.50815 1.09558 1.10191 0.73008 1.23174 0.97665 1.02114 0.94195 1.22608 0.96100 0.88295 0.95892 1.48396 1.53208 1.29537 1.03595 1.19702 0.79519 0.84378 0.82442 1.90686 1.40618 1.28768 1.83438 1.23325 1.04800 1.02884 0.96308 1.85544 1.70882 1.39891 0.95657 1.23163 1.38365 1.14284 0.93689 0.89925 1.26116 0.95736 0.97915 0.99304 1.70173 1.40058 1.30262 1.14194 0.85017 0.78815 0.77960 0.76305 1.18721 1.20402 1.18601 0.92100 0.89939 0.93531 0.75426 0.84531 0.82325 0.77275 0.88096 0.89241 0.89593 0.88876 0.87393 0.87659 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.10 71.98 0.66 -3.02 16 2 C 0.13 2.82 3.21 45.34 0.15 2.97 16 3 H 0.08 1.67 7.72 -2.39 -0.02 1.65 16 4 C 0.15 2.48 2.84 46.19 0.13 2.61 16 5 H 0.10 2.02 7.26 -2.39 -0.02 2.00 16 6 N -0.71 -9.80 5.17 -440.86 -2.28 -12.08 16 7 C 0.60 11.33 7.79 86.44 0.67 12.00 16 8 O -0.57 -15.25 16.53 -4.35 -0.07 -15.32 16 9 C -0.08 -1.32 7.06 40.35 0.28 -1.03 16 10 C -0.12 -2.10 10.65 22.57 0.24 -1.86 16 11 C -0.23 -2.59 10.81 22.01 0.24 -2.35 16 12 C 0.05 0.30 11.89 83.48 0.99 1.30 16 13 N -0.53 -4.31 5.99 -183.62 -1.10 -5.41 16 14 H 0.43 0.95 8.19 -92.71 -0.76 0.19 16 15 C -0.13 -1.96 6.77 31.99 0.22 -1.75 16 16 C 0.09 1.71 6.69 86.86 0.58 2.29 16 17 N -0.61 -15.85 3.06 -788.06 -2.42 -18.26 16 18 C 0.55 20.29 7.66 87.66 0.67 20.96 16 19 O -0.56 -25.24 14.90 -3.05 -0.05 -25.28 16 20 C -0.12 -4.82 5.16 71.24 0.37 -4.45 16 21 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 22 C -0.55 -30.99 9.50 67.95 0.65 -30.34 16 23 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 24 C 0.01 0.80 5.49 84.86 0.47 1.27 16 25 N -0.91 -55.58 13.22 21.65 0.29 -55.29 16 26 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 28 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 29 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.40 6.88 -2.39 -0.02 1.39 16 33 H 0.41 3.45 7.50 -92.71 -0.69 2.76 16 34 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.21 -0.27 8.06 -2.91 -0.02 -0.29 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.59 7.48 -2.39 -0.02 1.58 16 41 H 0.11 3.83 7.85 -2.39 -0.02 3.82 16 42 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -83.15 376.96 1.14 -82.01 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.40 Total: 15.06 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 6.31 Total: -1.42 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -5.51 Total: -91.04 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.12 Total: -40.61 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -83.15 1.14 -82.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735296185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.572 kcal (2) G-P(sol) polarization free energy of solvation -83.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds